Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01832 and BL01316
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01832___yisJ.1.5803.seq
# -bsequence dna-align/BL01316___cotH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01832___yisJ-BL01316___cotH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01832___yisJ-BL01316___cotH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01832___yisJ
# 2: BL01316___cotH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1235
# Identity: 575/1235 (46.6%)
# Similarity: 575/1235 (46.6%)
# Gaps: 472/1235 (38.2%)
# Score: 1226.0
#
#
#=======================================
BSNT_01832___ 1 ATG-GAGC---------GCGTGCATTTATTTT-----TTCATCGGGAGCA 35
||| |.|| ||..||.||||...| ||||||.|.||||
BL01316___cot 1 ATGAGTGCCACTGCCTTGCCGGCCTTTAGGCTGCACATTCATCCGAAGCA 50
BSNT_01832___ 36 GCTG-----------AAAAG------------------------------ 44
.||| |||||
BL01316___cot 51 TCTGCTTGAGTTGAAAAAAGACGTCTGGAGTGATGAAGCCGTTCCCGGCA 100
BSNT_01832___ 45 -------GAAAGGTACAGCCAAGGGGCTTTTCGTAACAGATCGATCTGTT 87
||..|||.||||.|||..||.|.||| |||
BL01316___cot 101 TGCTCTTGACCGGTTCAGCAAAGACGCCTGTCG---CAG----------- 136
BSNT_01832___ 88 TCTCCCATTCTTCTCACACAGCGTG--------------ACAGAGCGGAA 123
|.|||.||||.|.| ||.|| ||.||
BL01316___cot 137 -----------TGTCATACAGAGGGGCCCACACCCGCAAACTGA-CGAAA 174
BSNT_01832___ 124 AAGGCATCCTAT---------------GA-AATCAGCTGGGAAAAGTCTC 157
|| ||||||| || |||.| .||||||
BL01316___cot 175 AA---ATCCTATTTCATTCAATATCCGGACAATAA----AGAAAAG---- 213
BSNT_01832___ 158 TGCTTGGTGAAAGGACACTTTTTTTGAATGCAGAACAGGATGATCCGTCC 207
|||..|| ||..||||||.||.|||.|..||||||||||.
BL01316___cot 214 -GCTGCGT----------TTCATTTGAACGCGGAATATCATGATCCGTCT 252
BSNT_01832___ 208 CTGATGCGGCGCAGACTCGCCTATTGTTTTTTTGACCAGATCGGCGTACC 257
.|.||..|...|||.||..|||.|..|||||||||.||.||||||||.|.
BL01316___cot 253 TTCATCAGAAACAGGCTTTCCTTTCATTTTTTTGAACAAATCGGCGTCCT 302
BSNT_01832___ 258 TGCTCCCGCTGCCTCGTACA------GCTTTCTGACCATCAATGGCCAGC 301
|||.||.||.||.|| ||| .||||.| |||||||...|..
BL01316___cot 303 TGCGCCAGCAGCATC--ACACGTTTTCCTTTAT----ATCAATGAAAAAA 346
BSNT_01832___ 302 CTGAAGGCATTTATTTGAACATCAAGA--------ACCATCAGCCAGCCG 343
..||||||||.|||||.||.||| || ||.||||
BL01316___cot 347 AAGAAGGCATCTATTTAAAAATC--GAATCTGTTGACGATCA-------- 386
BSNT_01832___ 344 GT------AAAAGGAG----TTACGGAGTGAAGACGGCCGATCCAAGGGT 383
| ||.||||| ||| || |||..||.|.|| |
BL01316___cot 387 -TTTCTTAAAGAGGAGAAATTTA--GA---AAGGGGGGCCAT-------T 423
BSNT_01832___ 384 TCCATTGT-CCCTTTTTAACAATG-----ATTTCTCGGC----------- 416
| |||.| ||.||..|.||.||| .||||||.||
BL01316___cot 424 T--ATTATGCCGTTGATGACGATGCTAATTTTTCTCTGCTGAGTTCCTTC 471
BSNT_01832___ 417 ------------------ATTCT--------------------------- 421
|.|||
BL01316___cot 472 AATAAAAAGGCTAAGCAAAATCTCATGCAGGGATACGAAAGAAAAACGGG 521
BSNT_01832___ 422 -----------------------TACATGAATTTTTCATAC-TGATCCGC 447
|.|||||.|||.|| ||| |.|||...
BL01316___cot 522 TTCAAGCCGCCACGATGACTACCTCCATGAGTTTATC-TACTTTATCAAT 570
BSNT_01832___ 448 ACAGCCGGAGATGACGAATTGGCTGAAA---GGATTAAATTGTATCTGGA 494
||.|||..|||.|||..||| ||||| ..||.|||...|||||.||
BL01316___cot 571 ACCGCCAAAGACGACATATT---TGAAAAAGAAATCAAACGCTATCTCGA 617
BSNT_01832___ 495 TGTCAAGCTGTTTTTTTTGTGGCTGATCGGCAACGCCTGCACC---AAT- 540
||||||.|..|.|||..|||||||.||||||..||.||||||| |||
BL01316___cot 618 TGTCAAACAATATTTGCTGTGGCTCATCGGCGCCGTCTGCACCCAAAATT 667
BSNT_01832___ 541 --CAAGGCTT------TTACTACACATTTTGTTTAAACGAATCCGGTCGG 582
.|.||||| |.|.|||.|..|||.|||||| ||||||
BL01316___cot 668 TCGACGGCTTTGTCCATAATTACGCGCTTTATTTAAA------CGGTCG- 710
BSNT_01832___ 583 CTTT-------ACGTTTC----------------------CCCG--ATGG 601
||||||| |.|| ||||
BL01316___cot 711 ----CACAAAAACGTTTCAAATCATTCCATGGGATTATGACGCGACATGG 756
BSNT_01832___ 602 AGAC--AAGATCGCTTGCCGTACAAGAATGGTATGAAG-AAGACCCGCTT 648
.||| ||.| ||..||...||||| |||.|| |..|||.|.||
BL01316___cot 757 GGACGGAATA----TTCACGGGGAAGAA----ATGGAGCACAACCGGATT 798
BSNT_01832___ 649 CTGACAAAAGG---AAAGACGCTTTCGTCAAGGCTTCTATCCATTCCCGC 695
|.|.|.||||| .||.|||||.||..|||||||.||...|| |||||.
BL01316___cot 799 CCGGCGAAAGGCTATAATACGCTGTCTGCAAGGCTGCTCGACA-TCCCGG 847
BSNT_01832___ 696 C--TTCAGGTCGCAATATCACACCTTAATGAAAAACGTGCTGAAGCGGTC 743
| |||| .||.|||||....|..|||||||||||.||..||.|.||...
BL01316___cot 848 CTTTTCA-ATCCCAATACTTTAATTTAATGAAAAATGTCTTGCACCGCCA 896
BSNT_01832___ 744 GTTTACTAT------------------TGAACGATTATCT--CCTCTCAT 773
.|||||.|| || ||.|.|.|| |
BL01316___cot 897 ATTTACAATCAGCCGGCTTTCGCGGTATG--CGGTAAACTGGC------- 937
BSNT_01832___ 774 CAACG----AATGGCACCTTGACATTTGTCAAAGTGCTGCTGATGATCCT 819
||| |||.||.||| |||.| ||...||||||||
BL01316___cot 938 --ACGAGACAATCGCGCCT-----TTTCT--------TGAACATGATCCT 972
BSNT_01832___ 820 TTTA------TCAAAAAAAGCC--CCTTTCAAATCGAAAAGGAGCAGACC 861
|.|| |||.|.|.|||| | |||||.|.|||||.|
BL01316___cot 973 TATACAACCGTCACATACAGCCGGC--------TCGAAGATGAGCAAA-- 1012
BSNT_01832___ 862 AACATACTTAGAGAAATT--------------GAGGAA-CGG---CAGGA 893
||||.|.|| || |||||| ||| |.|
BL01316___cot 1013 AACAAATTT-------TTCATTTCATCGATCAGAGGAAGCGGTTCCTG-- 1053
BSNT_01832___ 894 CTTTTTGCAAGCACACTTAGC----AAGACTTTAG 924
||||| |.|| |||..| ||
BL01316___cot 1054 CTTTT--CGAG----CTTTCCCGATAA-------- 1074
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