Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01865 and BL01305

See Amino acid alignment / Visit BSNT_01865 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01865___yitS.1.5803.seq
#    -bsequence dna-align/BL01305___yitS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01865___yitS-BL01305___yitS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01865___yitS-BL01305___yitS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01865___yitS
# 2: BL01305___yitS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity:     615/898 (68.5%)
# Similarity:   615/898 (68.5%)
# Gaps:          83/898 ( 9.2%)
# Score: 2016.5
# 
#
#=======================================

BSNT_01865___      1 ATGACAGTTCATCTCATCGCTGACAGCGCCACTGATTTGCCTCGTTCTTA     50
                     ||||..|||||.||..|.||.||||||||..|.||||||||....||||.
BL01305___yit      1 ATGAACGTTCACCTTTTAGCAGACAGCGCGGCAGATTTGCCGAAATCTTT     50

BSNT_01865___     51 TTTTGAAGAAAAAGGCATTGGCTTTATTCCGCTCAGGGTTTCT-CTCGGC     99
                     ||.|||.|||.|..||||....|||||||||.|.|||| |.|| ||.|..
BL01305___yit     51 TTATGATGAACATCGCATCTCATTTATTCCGTTAAGGG-TGCTGCTTGAT     99

BSNT_01865___    100 GATAAAGAATTCGAAGATGCAGTCACAATTCATGC----GGATCAAATAT    145
                     ||.|||||||.|||.|||....|.||.||||| ||    ||   |..|.|
BL01305___yit    100 GAAAAAGAATACGATGATCTTCTGACGATTCA-GCCTCTGG---ACGTTT    145

BSNT_01865___    146 TTGAAGCGATGCAAAATGGAGAAACGCCTAAGACGTCGCAAGCC-TCACC    194
                     .|||||||||||...|.||..||.||||.||.||||| |.|||| ||.|.
BL01305___yit    146 ATGAAGCGATGCGCGAAGGCAAAGCGCCGAAAACGTC-CCAGCCGTCTCT    194

BSNT_01865___    195 GCACACGATTAAAAATG-TGTT----------TT--------TG--CAAT    223
                     |             ||| ||||          ||        ||  ||| 
BL01305___yit    195 G-------------ATGCTGTTCAAGAACGCATTCAGCGAGCTGGCCAA-    230

BSNT_01865___    224 ATGCCGAAACAGGTGATCCCGCTCTTTACATTGCCTTTTCCTCAGGTCTC    273
                         |||||   .|.|.||||||||.||.||.|||||||||||||..||.
BL01305___yit    231 ----CGAAA---ATAAACCCGCTCTCTATATCGCCTTTTCCTCAGAGCTG    273

BSNT_01865___    274 TCCGGCACGTATCAGACAGCTGTCATGATCGCCAATGAAGTGAAGGAGGA    323
                     |||||.||.||.|||||.|||||.|||...||.||.|||||.||||||||
BL01305___yit    274 TCCGGAACATACCAGACGGCTGTGATGGCGGCAAACGAAGTCAAGGAGGA    323

BSNT_01865___    324 ATTCCCCGATTTCGATTTGCGGGTCATTGATTCCAAATGCGCTTCATTAG    373
                     .|||||.||||||||..|||||.||||.||.||.||||||||||||||||
BL01305___yit    324 GTTCCCTGATTTCGACCTGCGGATCATCGACTCAAAATGCGCTTCATTAG    373

BSNT_01865___    374 GATACGGTCTGGCTGTCCAGCATGTTGCCGATCTCTGTATC-AACGGGAA    422
                     |.||.||.||.||||||.||||.|....|.|.||| |.|.| |||||.||
BL01305___yit    374 GCTATGGGCTTGCTGTCAAGCACGCCCTCAAACTC-GCAACTAACGGCAA    422

BSNT_01865___    423 TACAATACAAGAAATTGAAACGTCTGTAAAGAACTTTTGCAGCCAGCTTG    472
                     |||||||||||||||.||..|||||||||||.||||||||...||.||||
BL01305___yit    423 TACAATACAAGAAATCGAGTCGTCTGTAAAGGACTTTTGCGAACATCTTG    472

BSNT_01865___    473 AACACATTTTTACCGTTGATGATTTAACATATCTCGCGAGGGGCGGCCGG    522
                     ||||.|||||||||||||||||.||.||.|||.|.||.||.|||||..|.
BL01305___yit    473 AACATATTTTTACCGTTGATGACTTGACTTATTTGGCAAGAGGCGGAAGA    522

BSNT_01865___    523 ATCTCCAAAACGTCCGCTTTTGTCGGCGGCCTGTTGAATATTAAACCGCT    572
                     |||..||||.|.||.||.|||||||||||.||||||||||||||||||||
BL01305___yit    523 ATCAGCAAAGCATCGGCATTTGTCGGCGGGCTGTTGAATATTAAACCGCT    572

BSNT_01865___    573 GCTTCAGATGGAGGACGGCAAGCTTGTGCCTCTGGAAAAAATCCGCGGAC    622
                     ..|.||..|.||.||||||||||||||.||.||.|||||||||||.||..
BL01305___yit    573 TTTGCATGTTGATGACGGCAAGCTTGTCCCCCTTGAAAAAATCCGGGGCA    622

BSNT_01865___    623 AGAAGAAACTTTTCAAACGGATCATCGAGCTTATGAAAGAGCGCGGGGAT    672
                     |.|||||.||..|||.||||||.|||||..|.|||||.||..|..|.|..
BL01305___yit    623 AAAAGAAGCTGCTCAGACGGATGATCGAATTAATGAAGGAAAGAAGCGTC    672

BSNT_01865___    673 GATTTGAGCAATCAAACCGTCGGGATCAGCTACGCCGCGA--ACAAAGAA    720
                     |||||||||...||.||.|||||.||||||.|||  |.||  ||.||||.
BL01305___yit    673 GATTTGAGCGGACAGACGGTCGGCATCAGCCACG--GAGATGACGAAGAG    720

BSNT_01865___    721 AAAGCCACGGATATGAAACACCTGATTGAGGAAGCGTTCAAGCCGAAAGA    770
                     |..|||...||..|.||||...||||.||.|..|..|||.|||||.|.||
BL01305___yit    721 ACGGCCGAAGAAGTCAAACGGATGATCGAAGCCGAATTCCAGCCGGAGGA    770

BSNT_01865___    771 AATCATTATGCATCCA----ATCAGTTCAGCAATCGGCTCGCATGCCGGT    816
                     .|||.|    |.||.|    |||.|||||||..|||||.|.||.|||||.
BL01305___yit    771 GATCGT----CGTCAACATGATCGGTTCAGCGGTCGGCGCCCACGCCGGA    816

BSNT_01865___    817 CCAGGTACATTGGCAATATTCTTTTT--------AAGA-AAATGA---    852
                     ||.||.||||||||   ..|||||||        |||| |||.||   
BL01305___yit    817 CCCGGAACATTGGC---GGTCTTTTTTCCGGGGAAAGACAAAAGATAA    861


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01865 and BL01305

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
