Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02619 and BL01291
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:18
# Commandline: needle
# -asequence dna-align/BSNT_02619___trmD.1.5803.seq
# -bsequence dna-align/BL01291___trmD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02619___trmD-BL01291___trmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02619___trmD-BL01291___trmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02619___trmD
# 2: BL01291___trmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 747
# Identity: 547/747 (73.2%)
# Similarity: 547/747 (73.2%)
# Gaps: 30/747 ( 4.0%)
# Score: 1954.5
#
#
#=======================================
BSNT_02619___ 1 ATGAAAATCGACTTTTTGACGCTGTTTCCCGAAATGTTTGAAGGCGTGCT 50
|||||||||||.|||||.|||||.|||||.||||||||||||||||||||
BL01291___trm 1 ATGAAAATCGATTTTTTAACGCTTTTTCCGGAAATGTTTGAAGGCGTGCT 50
BSNT_02619___ 51 CGGCTCATCAATTCTTCAAAAAGCCCAGGAAAAAGATGCGGTGCAGTTTC 100
||||||.||.||.||.||||||||.|||||.||.||.||.||.|..||||
BL01291___trm 51 CGGCTCGTCGATCCTGCAAAAAGCTCAGGACAAGGACGCTGTCCGTTTTC 100
BSNT_02619___ 101 AAGTCGTAAATTTCCGGGAGTACTCTGATAACAAGCA-CAATACTGTTGA 149
..||.||.||.||.||||..||.||.||.|||||||| ||| ||.|||||
BL01291___trm 101 GCGTGGTGAACTTTCGGGCCTATTCCGACAACAAGCATCAA-ACCGTTGA 149
BSNT_02619___ 150 TGATTATCCTTATGGCGGCGGGGCAGGCATGGTTCTCAAGCCTCAGCCTG 199
.||||||||.||.||||||||.||.||.|||||.||.||.||.|||||.|
BL01291___trm 150 CGATTATCCATACGGCGGCGGAGCCGGAATGGTGCTGAAACCGCAGCCCG 199
BSNT_02619___ 200 TTTTTGACGCGGTCGAGGACCTGACATCAAAGGC---AGCCGCTG---CT 243
|.||||||||||||||..|.||||| ||| |||||..| ||
BL01291___trm 200 TCTTTGACGCGGTCGAAAAGCTGAC------GGCTGAAGCCGGAGGGTCT 243
BSNT_02619___ 244 CCGCGTATTATCCTCGTATGCCCGCAAGGTGAGCGTTTTACCCAAAAAAA 293
|||.|.||.||||||||.|||||.||.|||||.||.|.||||||..|.||
BL01291___trm 244 CCGAGAATCATCCTCGTCTGCCCCCAGGGTGAACGCTATACCCAGCAGAA 293
BSNT_02619___ 294 AGCCGAGCAATTAGCAAAGGAAGAGCATTTGCTGTTCATTTGCGGCCACT 343
.||.||..||.|.||...||||||||||||..||||||||||||||||.|
BL01291___trm 294 GGCGGAAGAACTGGCGCGGGAAGAGCATTTAATGTTCATTTGCGGCCATT 343
BSNT_02619___ 344 ATGAAGGCTATGATGAACGCATTCGCGAGCACTTGGTAACGGATGAAATA 393
|||||||.|||||||||||.||..|.||||||.||...||.||.||.||.
BL01291___trm 344 ATGAAGGGTATGATGAACGGATCAGGGAGCACCTGTCTACAGACGAGATT 393
BSNT_02619___ 394 TCAATTGGCGATTTTGTTCTGACGGGCGGTGAGCTCCCTGCAATGATGAT 443
||.||.||.|||||.|||.||||.||.||.|||||.||.||.||||||||
BL01291___trm 394 TCGATCGGAGATTTCGTTTTGACAGGGGGAGAGCTGCCGGCGATGATGAT 443
BSNT_02619___ 444 CGCAGACAGTGTGGTCAGACTGCTTCCGGGTGTACTGGGTAAAGAGGCTT 493
|||||||||.||.||..|.||..|.|||||.||.||.||.||.||.|..|
BL01291___trm 444 CGCAGACAGCGTTGTGCGGCTTTTGCCGGGCGTGCTCGGCAAGGAAGAAT 493
BSNT_02619___ 494 CCCATATTGAGGATTCCTTCAGCACCGGACTTTTAGAGCACCCGCATTAT 543
|.||..||||.||.||.||||||||.||.|||.|.||.|||||.|||||.
BL01291___trm 494 CGCACCTTGAAGACTCTTTCAGCACAGGGCTTCTTGAACACCCTCATTAC 543
BSNT_02619___ 544 ACAAGACCGGCAGATTACAAAGGTTTAAAAGTGCCTGA------AACACT 587
||..|.|||||||||||.|||||.||.||.|||||.|| .|||
BL01291___trm 544 ACGCGGCCGGCAGATTATAAAGGCTTGAAGGTGCCGGACGTTCTGACA-- 591
BSNT_02619___ 588 CTTGTCAGGAAACCATGCAAAAATTGAAGAATGGCGGAATAAAGAATCGA 637
||.||.||||||||.||.||..|||||||||||...||.||.||..
BL01291___trm 592 ----TCCGGGAACCATGCGAAGATCAAAGAATGGCGGCGGAAGGAGTCTC 637
BSNT_02619___ 638 TCAGAAGGACCTACCTAAGACGTCCGGATCTGTTGAAAGACTACCCGCTT 687
||||..|.||.|...||||.|||||.||.||..||.||.||||.||..|.
BL01291___trm 638 TCAGGCGCACATTTTTAAGGCGTCCCGACCTTCTGGAAAACTATCCTTTG 687
BSNT_02619___ 688 ACAGAGCAGCAAA--GAAAGTGGATTTCTGAATGGGAAAAAGAATAG 732
.|||| ||.|.| ||||||||||||||||||||.||||....|||
BL01291___trm 688 TCAGA--AGAAGAGCGAAAGTGGATTTCTGAATGGAAAAACCGGTAG 732
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