Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02630 and BL01283
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:19
# Commandline: needle
# -asequence dna-align/BSNT_02630___smf.1.5803.seq
# -bsequence dna-align/BL01283___smf.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02630___smf-BL01283___smf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02630___smf-BL01283___smf.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02630___smf
# 2: BL01283___smf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 589/1002 (58.8%)
# Similarity: 589/1002 (58.8%)
# Gaps: 207/1002 (20.7%)
# Score: 1553.0
#
#
#=======================================
BSNT_02630___ 1 --------------------TTGGATCAGGCCGCTGC-CTGCCTAACGAT 29
||.||| ..||| |.||| |
BL01283___smf 1 ATGAACGACAGCAGCGAGCTTTTGAT------ATTGCTCCGCC------T 38
BSNT_02630___ 30 TTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGA 79
|.||.|.| ||.|| |||||.||.||.||....||.|||||||
BL01283___smf 39 TCGCGGCA-CACTC--------TCCCCTTCTCTGCTGACCAAGTGGTGGA 79
BSNT_02630___ 80 A--AGCCGATCCGTCTATGTCGCTGAC-----------ATCACCTGTGTT 116
| || ||.||.||..||||.||.|| |.||.|| |.|.
BL01283___smf 80 AGCAG--GACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCT-TTTA 126
BSNT_02630___ 117 ACAAACGGTTACTCGTGATCAAATAAAAGCA-------GCTGCATTAAAA 159
||.|| |.|| |.||.||| ||.|.|| |||.|||...||
BL01283___smf 127 ACGAA-GCTT-----TCATTAAA-AAGATCAGACTTGTGCTCCATACGAA 169
BSNT_02630___ 160 AAC-----GAAATAGAAC-----AATTTTATCCAAA--GCTC--CCGCGT 195
||| |||..||||| |||.|| ||| |||| ||
BL01283___smf 170 AACTGGCGGAACAAGAACTGTCTAATGTT----AAACGGCTCATCC---- 211
BSNT_02630___ 196 GTACTT-----GCTGCTTATCGTGAGCAAG---GCATTAACACCATCCCT 237
||.||| ||.|| || || | ||||.|.|.||
BL01283___smf 212 GTTCTTACGAGGCGGC----CG---GC--GTCCGCATGACCGCC------ 246
BSNT_02630___ 238 ATTTCTTCAAAGC----AATATCCTTTCTGGCTTAAAAGCATTTATGATC 283
||.||||| | |.|||||...|.|.||.||||.||||.||||.|
BL01283___smf 247 ATATCTTC----CCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACC 292
BSNT_02630___ 284 CCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCTTCTTTCGA--AAG 331
|.|||.||||.||.|||..||||||..|.|..|..|||| ||.| ||.
BL01283___smf 293 CGCCTCCCGTCCTTTTTTTAAAAGGAAACAAAAAACTTC--TCCATGAAC 340
BSNT_02630___ 332 GGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTAT-GGGAA 380
..|||...||.|||||.||.||.||..|....||..|| |||| .||||
BL01283___smf 341 AAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCA--TTATACGGAA 388
BSNT_02630___ 381 ACAAG--------------TTGTCAATCATC-TTACAAAAGAGATCTGTC 415
| ||| ||||||...|.| ||.||||
BL01283___smf 389 A-AAGAGCTGCGGTCCAGCTTGTCAGGGAGCTTTGCAAA----------- 426
BSNT_02630___ 416 GTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATG 465
||..|.|||..|||.||||||||.||.||....||.||.|||||..|.
BL01283___smf 427 --AACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTC 474
BSNT_02630___ 466 TCCCATGCTGCA-AGTA----TTAAGGCGAAGGGGCGGACAATTGGCGTC 510
.||||| |.|.| ||.| || |.|||||..|||||||.|||||.
BL01283___smf 475 GCCCAT-CAGGAGAGCATCCGTT----CAAAGGGAAGGACAATCGGCGTT 519
BSNT_02630___ 511 ATTGCAGGCGGATTTCAACA-CATTTATCCCCGAGAAAACCTTCAGTTAG 559
||.||.|||||| ||||||| |||.||||||||.|||.|.|..|||.|.|
BL01283___smf 520 ATCGCGGGCGGA-TTCAACAGCATATATCCCCGTGAACATCGCCAGCTCG 568
BSNT_02630___ 560 CAGATCACATGGCTAAACACCATATCCTGCTG---TCAGAGCACCCACCT 606
|.|..||.|||||..||..||| ||||||| |||||||||||.|||
BL01283___smf 569 CCGGACAAATGGCCGAAAGCCA---CCTGCTGGTATCAGAGCACCCTCCT 615
BSNT_02630___ 607 GAAACGAAACCCCAAAAATGGCATTTCCCTATGAGAAACCGTATTATCAG 656
.|.|..|||||.||||||||||||||.||.|||.||||.||..|.|||||
BL01283___smf 616 CACATTAAACCGCAAAAATGGCATTTTCCCATGCGAAATCGGCTGATCAG 665
BSNT_02630___ 657 CGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTT 706
||||.|||..|||||..|..|||||||.||.|||||.|||||.|||||.|
BL01283___smf 666 CGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGAT 715
BSNT_02630___ 707 CGCTGATTACTGCCTATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCC 756
||||.|||||.||.||.|||||..|.||.||.|||.|.|||||.||.|||
BL01283___smf 716 CGCTCATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCC 765
BSNT_02630___ 757 GTACCCGGTTCATTGTTTG------ACCCTTACGCCGGAGGTCCTATAAA 800
||.||.|||.|..|.|||| ||.|||.| ||||||..||.
BL01283___smf 766 GTGCCGGGTCCGATCTTTGATGCCAACTCTTTC------GGTCCTTCAAG 809
BSNT_02630___ 801 ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCA--GAGGATATTTT 848
.|||||||||.|.|||||.|||..|.||| |.|..| ||.||.|||||
BL01283___smf 810 GCTGATCCAGGAAGGGGCGAAACTCGTAT--TAACTATTGAAGACATTTT 857
BSNT_02630___ 849 CGAGGAACTTCCTGAGAG-----AAACGTTCAATATACGGAACCCTTTTG 893
..|.|||||||| | |||||.|||||||||.| |.|||.||.
BL01283___smf 858 GAACGAACTTCC-----GCCTTCAAACGCTCAATATACAG-AGCCTGTTT 901
BSNT_02630___ 894 A- 894
|
BL01283___smf 902 AG 903
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