Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02670 and BL01256
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_02670.1.5803.seq
# -bsequence dna-align/BL01256___fliR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02670-BL01256___fliR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02670-BL01256___fliR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02670
# 2: BL01256___fliR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity: 424/788 (53.8%)
# Similarity: 424/788 (53.8%)
# Gaps: 214/788 (27.2%)
# Score: 1404.5
#
#
#=======================================
BSNT_02670 0 -------------------------------------------------- 0
BL01256___fli 1 ATGTCAATAATCGAATCATTTCCAGCCTTTTTACTTGTGTTTGTCAGAAT 50
BSNT_02670 0 -------------------------------------------------- 0
BL01256___fli 51 CACAGCATTCTATGTAACGGTGCCTCTATTTTCTTATCGGACAATTCCGG 100
BSNT_02670 0 -------------------------------------------------- 0
BL01256___fli 101 CCGTTCATAAAATAGGTTTTGCATTTTTTCTTGCGCTCGTCAGTTTTCAA 150
BSNT_02670 1 ------------------------------------------ATGCTTTT 8
|||.|.||
BL01256___fli 151 GCGATTGAAAAGCCTCCTCACCTTGACGTTGACGGAATTTACATGATGTT 200
BSNT_02670 9 GGCGTTTAAAGAAGCTTTGGTCGGCCTATGTCTG---GGTTTAATTGCTT 55
|||..|.||.|||||..|..||||.|| |||| ||..|.||.||||
BL01256___fli 201 GGCCATGAAGGAAGCGCTCATCGGACT---TCTGCTTGGGCTGATCGCTT 247
BSNT_02670 56 ATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCAA 105
|.||||||||..|.||.||.||.||.|||||.|||||.||||||||||||
BL01256___fli 248 ACATGATGATCTCAGCCGTTCAAATCGCCGGATCGTTCATTGATTTTCAA 297
BSNT_02670 106 ATGGGATTTTCAATAGCAAACGTTATTGATCCGCAAACCGGTGCACAAAG 155
|||||||||.|..|.||.||.||.||.|||||.||.||.||.||.|||||
BL01256___fli 298 ATGGGATTTGCGGTGGCGAATGTGATCGATCCACAGACAGGGGCGCAAAG 347
BSNT_02670 156 TCCG-TTGATTGGCCAGTTTATCTATACGATGGCACTTTTGTTTATGCTG 204
.||| ||| |.|||||||||.|.|||||||||||.||..|..|.||||||
BL01256___fli 348 CCCGCTTG-TCGGCCAGTTTTTATATACGATGGCGCTGCTTCTCATGCTG 396
BSNT_02670 205 AGTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGCTTTCA 254
||..|.|||||.||.|||.|..||||.||.||.||.||.|||||||.|||
BL01256___fli 397 AGCCTGAATGCGCATCATCTCCTGCTTGACGGGATCTATTACAGCTATCA 446
BSNT_02670 255 GTATATTTCAGTTGATCA----GGCATTTCCGAATTTCG--GCGATGAAA 298
.||.|||.|.||.|| || |||..|..|| |||.| ||||.|||
BL01256___fli 447 ATACATTCCGGTCGA-CAAGATGGCGCTGTCG--TTTGGAAGCGAAGAA- 492
BSNT_02670 299 AGTTTGCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCGCT 348
||||||.|.|||||.||.||||||||.|||.|.||||||||||..||.
BL01256___fli 493 --TTTGCCGAGTTTATCGCAAAAAGCTTCAATACGATGTTTATTACAGCA 540
BSNT_02670 349 TTTCAAATGTCAGCGCCGGTTGTGGCCAGCTTGTTTCTAGTTGATTTAGC 398
||||||.||||.|||||.||||||||..|.||||||.||||.|||.|.||
BL01256___fli 541 TTTCAATTGTCTGCGCCTGTTGTGGCTTGTTTGTTTTTAGTCGATCTGGC 590
BSNT_02670 399 ATTAGGCATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCG 448
|||.||.||.|||||..||||.||.||||||.|.||.||.|||||.||||
BL01256___fli 591 ATTGGGGATTGTGGCGAGAACGGTGCCGCAGCTCAACGTGTTTGTCGTCG 640
BSNT_02670 449 GTCTCCCTTTAAAGATCGCTGTCAGTTTCATCATGCTCATTGTATGTATG 498
|.||.|||||.||.|||||..|||..||.|||||||||||..|.||.|||
BL01256___fli 641 GGCTTCCTTTGAAAATCGCGATCACCTTTATCATGCTCATCATCTGCATG 690
BSNT_02670 499 TCCGTTATCTTCGTCGTTGTCCGGAATGTTTTC-AGTTTAACGATTGAAA 547
.|||||||.|||..|.|..|.|.|.|.||.||| |.||| .|.|||...|
BL01256___fli 691 GCCGTTATGTTCAGCATGATGCAGCACGTCTTCGAATTT-GCCATTCGGA 739
BSNT_02670 548 CGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA 585
|.|||.|..||||.|||.|.|||.|.||.||..|.|.|
BL01256___fli 740 CAATGAGAGATCTATTAACTTTGCTTGGGGTGGCATGA 777
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