Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02682 and BL01247
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02682___cheD.1.5803.seq
# -bsequence dna-align/BL01247___cheD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02682___cheD-BL01247___cheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02682___cheD-BL01247___cheD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02682___cheD
# 2: BL01247___cheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 526
# Identity: 368/526 (70.0%)
# Similarity: 368/526 (70.0%)
# Gaps: 44/526 ( 8.4%)
# Score: 1238.5
#
#
#=======================================
BSNT_02682___ 1 ATGAGTACAACTGAGGCTGTTGTTATAAAG-----------------GTT 33
|||| |.|.||.|| |.|||| ||.
BL01247___che 1 ATGA--AAATCTTAG---------AAAAAGAAACATCGATTATCAGAGTG 39
BSNT_02682___ 34 GGGATTGCTGACGTGAAGATCGCCCGC-TTCCCGGATACCATCCGGACCT 82
||.|||||.||.||.||.||||.|||| .|||| ||.|..|||.|.||.|
BL01247___che 40 GGAATTGCCGATGTAAAAATCGTCCGCACTCCC-GACAAGATCAGAACAT 88
BSNT_02682___ 83 CTGGTTTGGGCTCATGTGTGGGGCTGGTGCTTTATGAT---AAAGAAAAG 129
|.|||.|.||.||.||.||.|||||.|||||.|||||| .|||.||||
BL01247___che 89 CGGGTCTCGGTTCGTGCGTCGGGCTCGTGCTGTATGATTTGGAAGCAAAG 138
BSNT_02682___ 130 CAAACGGCGGGTCTTGTTCATGTCATGCTTCCGGATTCGACGTTATCGAA 179
|||||.|||||.||.||.||||||||||||||.||..|.|||||.||
BL01247___che 139 ---ACGGCCGGTCTCGTCCACGTCATGCTTCCGGACTCTTCCTTATCCAA 185
BSNT_02682___ 180 AACTGCC-GAGCTCAACCGGGCTAAGTACGCTGACACCGCCGTACAGACC 228
.|| ||| ||..|||||..|||.||.|||||.|||||.|||||..|..|.
BL01247___che 186 GAC-GCCGGACATCAACGTGGCAAAATACGCGGACACAGCCGTCGAAGCG 234
BSNT_02682___ 229 ACGATTGATATGCTGATAGAAGCGGGATGCCGGAAATTTGCATTAAAAGC 278
|||.|..|.||||||.|.|||||.||||||||.||||..||.||.|||||
BL01247___che 235 ACGGTCAAGATGCTGCTTGAAGCCGGATGCCGAAAATACGCTTTGAAAGC 284
BSNT_02682___ 279 AAAGCTGGCCGGCGGATCAGAGATGTTTAAATTTAA-ATCGACAAATGAT 327
.||..|||||||.|||.|.||.|||||||||||||| || ||||||||||
BL01247___che 285 GAAAATGGCCGGAGGAGCCGAAATGTTTAAATTTAAGAT-GACAAATGAT 333
BSNT_02682___ 328 TTGATGAAGATCGGACCGAGAAATGTATTAGCGATAAAAGAACAGCTGTC 377
||||||||..||||.||.||||||||..|.|||||.|||.||||.||.||
BL01247___che 334 TTGATGAAAGTCGGGCCAAGAAATGTGCTTGCGATTAAAAAACATCTATC 383
BSNT_02682___ 378 TTTATTTAATATTCCTATTATTAGTGAAGATACGGGCGGCTCAAGCGGCC 427
|.|.||.||.|||||.|||.|.||.||.|||||.|||||....|||||..
BL01247___che 384 TCTCTTAAACATTCCGATTGTAAGCGAGGATACAGGCGGAAACAGCGGAA 433
BSNT_02682___ 428 GGACGATAGAATTTGAACCGAAGTC--CTGCATGCTGCATATTCGAACTG 475
|||||||.||.||.||.|||.|.|| |||.| ||....||.||.||.|
BL01247___che 434 GGACGATCGAGTTCGATCCGCAATCAGCTGAA--CTTGTCATCCGGACAG 481
BSNT_02682___ 476 TTAAACAAGGTGAAAAAACGATTTAA 501
||||||||||||.||.||||||||||
BL01247___che 482 TTAAACAAGGTGTAACAACGATTTAA 507
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