Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02691 and BL01238

See Amino acid alignment / Visit BSNT_02691 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_02691___cdsA.1.5803.seq
#    -bsequence dna-align/BL01238___cdsA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02691___cdsA-BL01238___cdsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02691___cdsA-BL01238___cdsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02691___cdsA
# 2: BL01238___cdsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity:     563/853 (66.0%)
# Similarity:   563/853 (66.0%)
# Gaps:         101/853 (11.8%)
# Score: 1714.0
# 
#
#=======================================

BSNT_02691___      1 ATGAAACAAAGAATTTTGACAGGTGTTCT---GGCAGCAATTGTATTTTT     47
                     ||||||||.|||||.|||||.|||||..|   ||||||..||        
BL01238___cds      1 ATGAAACAGAGAATATTGACGGGTGTGATCGCGGCAGCGGTT--------     42

BSNT_02691___     48 ATTTTTG------GTTATTGTCGGGAAATTGCCGTTCACCATATTAATTT     91
                      |||.||      ||.|||.||||..|..|||||||||||.|..||.|||
BL01238___cds     43 -TTTCTGCCGCTCGTGATTTTCGGCGAGCTGCCGTTCACCCTGCTAGTTT     91

BSNT_02691___     92 ATGCTATGGGCAGTGTGGCGCTTTTTGAACTTTTACGGATGAAAAAGCTG    141
                     ||||.||.||.|...|.||.||.||||||||||||.|.||||||...|||
BL01238___cds     92 ATGCAATAGGTATACTTGCTCTATTTGAACTTTTAAGAATGAAAGGCCTG    141

BSNT_02691___    142 AAGCTGGTTTCA---CTGCCGGGTTTGATCGGTCTTTTATTATTGTGGAT    188
                     ||||||  .|||   || ||||||.|.|||.|..|..|..|.|||..|.|
BL01238___cds    142 AAGCTG--ATCAGCGCT-CCGGGTATCATCAGCATGCTGCTGTTGGCGGT    188

BSNT_02691___    189 GTTCTTATTGCCAAGCCAGTATTCGTTTTTTGAAG----CGGAC--GGAA    232
                     .||..|.|..||||||||.||..||      ||||    .||.|  ||.|
BL01238___cds    189 TTTGCTGTGTCCAAGCCAATACGCG------GAAGACGCTGGGCTGGGTA    232

BSNT_02691___    233 TTTCCAAAATGGAAATCG-CTTTATTTGCGGTACTGCTATTGC---TGAC    278
                     |..|||||..|||..||| |||| ||.||||   |.||.||||   ||.|
BL01238___cds    233 TAACCAAAGGGGAGGTCGTCTTT-TTGGCGG---TCCTTTTGCTTTTGGC    278

BSNT_02691___    279 TTACACAGTGTTGGTCAAGAACACCTTTACTTTTGATGAAGTCGG-GTTT    327
                     .||.||.|||.|...|||.|||.|.|||||||||||.|||| ||| .||.
BL01238___cds    279 ATATACGGTGCTCAGCAAAAACTCGTTTACTTTTGACGAAG-CGGCATTC    327

BSNT_02691___    328 ATTACGCTTGCAGCAATTTACATCGGAAT-GTGTTTTCATTATTTTATCG    376
                     .|..||||.||||||.||||.||||||.| |.||||| ||||.|||||.|
BL01238___cds    328 GTGGCGCTGGCAGCAGTTTATATCGGATTCGGGTTTT-ATTACTTTATTG    376

BSNT_02691___    377 AAATCAGAAATCTTGACCAATACGGATTAACATACATTTTTTATGCGTGT    426
                     ||||||||||..|         ||||.|.|..||..|.||||.||||...
BL01238___cds    377 AAATCAGAAACAT---------CGGACTCAGCTATGTCTTTTTTGCGATC    417

BSNT_02691___    427 GTTGTCATTTGGTCCACCGATTCCGGTGCCTATTTTGTCGGTAAATCGCT    476
                     |..|||.|.|||||.||.||||||||.||.||||||.||||.||..||.|
BL01238___cds    418 GGCGTCGTCTGGTCAACAGATTCCGGCGCTTATTTTATCGGAAAGGCGTT    467

BSNT_02691___    477 TGGGAAGCGGAAACTGTGGCCTGAAATCAGTCCGAATAAAACAGTGGAAG    526
                     |||.||||||||.||.||||||||||||||.||.||.|||||.||.||||
BL01238___cds    468 TGGAAAGCGGAAGCTCTGGCCTGAAATCAGCCCTAACAAAACGGTAGAAG    517

BSNT_02691___    527 GGTTTGCAGGCGGAATTGTCATCGCACTTGTATTGGCGACGATTTTTCAG    576
                     |.|||...|||||||||.|.|..||..|.||.||..|..||||||.||||
BL01238___cds    518 GCTTTTGGGGCGGAATTTTGACAGCGGTCGTTTTTTCCGCGATTTATCAG    567

BSNT_02691___    577 -------CTTGTTGCACAACTTCCGATCCCGTATATCTATCTGCTGTTGA    619
                            |..|||       |||||  |.||..|||||.|.|| ||.|||
BL01238___cds    568 GCCGCCACAGGTT-------TTCCG--CACGCTTATCTGTTTG-TGCTGA    607

BSNT_02691___    620 TCA----CGCTGTTTTTGTCTGTTTTCGGACAACTTGGAGATTTAGTGGA    665
                     |||    || ||.|||||||..|..||||.||..|.||.|||||.|..||
BL01238___cds    608 TCATTACCG-TGCTTTTGTCAATCGTCGGTCAGATCGGCGATTTGGCCGA    656

BSNT_02691___    666 ATCCGCCTTGAAAAGACATTACGATGTAAAGGATTCTG---GGAAAATTC    712
                     .||.||.||.|||||.||||||.|.||.||.||.||.|   |||    ||
BL01238___cds    657 GTCTGCGTTCAAAAGGCATTACCAGGTGAAAGACTCGGGCCGGA----TC    702

BSNT_02691___    713 TTCCCGGG-CATGGCGGTATATTAGACCGTTTTGACAGTTTCTTGTTTGT    761
                     .||||||| ||.|||||.||..|.|||||.||||||||.||.||.|||||
BL01238___cds    703 CTCCCGGGACACGGCGGAATGCTGGACCGCTTTGACAGCTTTTTATTTGT    752

BSNT_02691___    762 CATGCC-TTTCTTGTACTTTCTGCTTGCCCTTTT-------TTC-----A    798
                     |||||| .||| |||||||.|||||||..|||||       |||     |
BL01238___cds    753 CATGCCGGTTC-TGTACTTCCTGCTTGTTCTTTTTCAGCCGTTCGGGCTA    801

BSNT_02691___    799 TAA    801
                     |.|
BL01238___cds    802 TGA    804


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02691 and BL01238

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
