Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02708 and BL01220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_02708___ribC.1.5803.seq
# -bsequence dna-align/BL01220___ribC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02708___ribC-BL01220___ribC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02708___ribC-BL01220___ribC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02708___ribC
# 2: BL01220___ribC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 667/1023 (65.2%)
# Similarity: 667/1023 (65.2%)
# Gaps: 135/1023 (13.2%)
# Score: 1996.5
#
#
#=======================================
BSNT_02708___ 1 GTGAAGACGATACATATTACACATCCTCATCATTTAATAAAAGAGGAGC- 49
.|||||||||||||||||.|.||.||.||..|.|| |.|||
BL01220___rib 1 TTGAAGACGATACATATTTCCCACCCACACGACTT---------GAAGCG 41
BSNT_02708___ 50 --AGG------CAAAATCAGTGATGGCGTTAGGATATTTTGACGGCGTTC 91
||| |.|.||||||.|||||.|||||.|||||||||||.||||
BL01220___rib 42 TGAGGATTTTCCGACATCAGTTATGGCATTAGGTTATTTTGACGGTGTTC 91
BSNT_02708___ 92 ATCTCGGGCATCA-AAAGGTAATCTGCACAGCGAAGCAAATAGCCG---- 136
|.||.||.||||| .|||..|.||| .|||||.|| |||.| |||
BL01220___rib 92 ACCTGGGACATCAGCAAGTGATTCT-TACAGCAAA--AAACA-CCGCGGC 137
BSNT_02708___ 137 AAGA-AAAAGGTCTGACATTGGCTGTGATGACCTTTCATCCCCATCCTTC 185
|||| ||..|||| |.|..|.|.||||||||||||||||||||.|||||
BL01220___rib 138 AAGAGAAGGGGTC--AAAACGTCCGTGATGACCTTTCATCCCCACCCTTC 185
BSNT_02708___ 186 TCACGTGTT------GGGCAGAGATAAGGAACCTAAGGATCTGATTACGC 229
|..||||.| .|||.| |||.||.||||||.|.||.||||
BL01220___rib 186 TGCCGTGCTCAAAAAAGGCCG------GGAGCCGAAGGATTTAATCACGC 229
BSNT_02708___ 230 CTCTTG-AAGACAAAATAA--ATCAAATTGAACAATTAGGTACAGAAGTT 276
|| ||| ||||||||||.| ||| ||||||.|.|||||....||..||
BL01220___rib 230 CT-TTGCAAGACAAAATCAGCATC--ATTGAAGATTTAGGGGTCGATTTT 276
BSNT_02708___ 277 CTGTATGTCGTTAAATTTA---ATGAAGTGTTTGCTTCTCTTTCTCCTAA 323
.|.||.||.||.|.||||| .|||| ||.||||||||.||.|||.|
BL01220___rib 277 TTATACGTTGTCACATTTACCCCTGAA---TTCGCTTCTCTATCACCTGA 323
BSNT_02708___ 324 GCAGTTTATAGACCAGTATATTATCGGCCTTAATGTGCAGCACGCA---- 369
|.|.|||||.||.||.|||||..|||||.||.|||| |||.||
BL01220___rib 324 GGAATTTATCGATCAATATATACTCGGCTTTCATGT----CACTCATGTT 369
BSNT_02708___ 370 GTGGCAGGCTTTGACTTTACGTACGGCAAATACGGCAAGGGAACAATGAA 419
||.||.||.|||||||||||.|.|||.||||.||||||.||.||.|||.|
BL01220___rib 370 GTAGCCGGATTTGACTTTACCTTCGGGAAATTCGGCAAAGGCACTATGGA 419
BSNT_02708___ 420 GACCATGCCGGATGATTTAGACG-GAAAAGCTGGGT-----GCACAATGG 463
.|.|.|.|.|||..|| | ||||.||.|.|| ||||....|
BL01220___rib 420 AAACTTCCAGGAGTAT------GCGAAAGGCCGTGTTAAAAGCACGTCTG 463
BSNT_02708___ 464 TAGAAAAATTAACGGAGCAGGATAAAAAAATCAGTTCTTCGTATATCCGT 513
|.|.|||||...|..|.||||||.||||..|.||.||..||...|||||
BL01220___rib 464 TCGCAAAATATTCCAATCAGGATCAAAAGGTAAGCTCCACGAGGATCCG- 512
BSNT_02708___ 514 ACTGCGCTTC---AAAACGGAGATGTTGAAT----TGGCGAATGTCTTGC 556
|.||| ||| .|..|||.||.||.||.| ||..||| .|||
BL01220___rib 513 -CAGCG-TTCTGGGAGCCGGTGACGTCGAGTACGCTGCTGAA----CTGC 556
BSNT_02708___ 557 TTGGACA-ACCTTATTTTATTAAAGGAATTGTCATTCATGGTGATAAAAG 605
|.|| || .||.||...|.|.|||||..||||.||.||.||.||||||||
BL01220___rib 557 TCGG-CAGGCCGTACCATGTGAAAGGCTTTGTGATCCACGGCGATAAAAG 605
BSNT_02708___ 606 AGGGCGGACCATCGGGTTTCCGACAGCGAATGTCGG-TTTAAATA-ACAG 653
|||.||.||.|||||.||||||||.||||||.|||| .|||||.| |||
BL01220___rib 606 AGGCCGCACGATCGGATTTCCGACCGCGAATATCGGCCTTAAAGACACA- 654
BSNT_02708___ 654 CTATATCGTTCCGCCCACAGGTGTATATGCCGTAAAAGCGGAAGTGAACG 703
||.|||||.|||||.||||||||.||.|||||.|||||.|||.|...||
BL01220___rib 655 -TACATCGTCCCGCCGACAGGTGTGTACGCCGTTAAAGCCGAAATCGGCG 703
BSNT_02708___ 704 GCGAAGTTTACAATGGCGTTTGCAATATTGGCTATAAGCCGACGTTTTAT 753
|||..||.|||||.|||||.||||||.|.||.||.||||||||||||||.
BL01220___rib 704 GCGCTGTCTACAACGGCGTCTGCAATGTCGGATACAAGCCGACGTTTTAC 753
BSNT_02708___ 754 GAAAAGCGCCCTGAGCAGCCTTCCATCGAGGTCAATCTGTTTGATTTCGA 803
|||||.||.||.|..||||||||.|||||.|||||..|.||.|||||.||
BL01220___rib 754 GAAAAACGGCCGGGTCAGCCTTCAATCGAAGTCAACTTATTCGATTTTGA 803
BSNT_02708___ 804 TCAAGAGGTATATGGAGCCGCTATAAAAATCGAATGGTACAAACGGATTC 853
.|..||..||||.||..|||..||.||..|.||||||||.||.|||.|..
BL01220___rib 804 CCGTGACATATACGGCTCCGAAATCAAGGTTGAATGGTATAAGCGGCTGA 853
BSNT_02708___ 854 GGAGCGAGCGGAAATTCAATGGTATCAAAGAATTAACAGAG--------- 894
|||||||....|||||| || .||..||.|| |||
BL01220___rib 854 GGAGCGAAAAAAAATTC---GG-----CAGCGTTGAC-GAGCTTGTCGAA 894
BSNT_02708___ 895 CAAATT----GAGAAAGATAAGCAGGAAGCCATCCGTTATTTCAGCAATT 940
||.||| ||||.|.|.|| |||||.|||||.|..|||||..|
BL01220___rib 895 CAGATTTCTAGAGACAAAGAA----GAAGCGATCCGCTTCTTCAGAGA-- 938
BSNT_02708___ 941 TGCGGAA-------ATAA----- 951
|||||| ..||
BL01220___rib 939 -GCGGAAGCCGGCCGGAATCTAG 960
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