Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02996 and BL01176
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_02996.1.5803.seq
# -bsequence dna-align/BL01176___ynfC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02996-BL01176___ynfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02996-BL01176___ynfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02996
# 2: BL01176___ynfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 403
# Identity: 224/403 (55.6%)
# Similarity: 224/403 (55.6%)
# Gaps: 107/403 (26.6%)
# Score: 541.0
#
#
#=======================================
BSNT_02996 1 TTGAAAAAAGTAACGATAT------TGAAAGCATCCATCTTATTCTTGGC 44
.||||||| ||.|| ||.||...|||||.||.||.||.|.
BL01176___ynf 1 ATGAAAAA------GACATTGTTTCTGCAACTGTCCATATTCTTTTTAGT 44
BSNT_02996 45 GATTGCCAGTTTTCATTTGCTCTCAATTCCCCACGCCTTTGATATCGG-- 92
.|||||.||..||||||.|.|||||||.||||| |||..|||
BL01176___ynf 45 CATTGCGAGCCTTCATTCGTTCTCAATGCCCCA-------GATGCCGGCA 87
BSNT_02996 93 --TCATCAT---TATAAAGCCGTAGCCGAC-----CAGCAG--GAAATGC 130
|||.||| .|.||||||| | |||.|| |||.|.|
BL01176___ynf 88 AATCACCATGCGCAAAAAGCCG-------CTGTTTCAGGAGACGAACTCC 130
BSNT_02996 131 ATGAAATGAAAGCCGGCCAAAATGCTGATGATGAGAAGAAATCCATCACA 180
|||||.|||.||.|||..||.|||.|||.||..||..||||| |||.|
BL01176___ynf 131 ATGAACTGACAGTCGGAAAATATGGTGAAGAAAAGGCGAAAT-CATTA-- 177
BSNT_02996 181 GGGGCATTTACACTGACCGCTTTATGGGC--AATGGCTGTTCTGCT---- 224
.||.||| |||| ||.|||..|.|| ||| |.||.||.||
BL01176___ynf 178 -TGGAATT--CACT---CGGTTTCGGAGCTGAAT--CCGTCCTTCTCTTA 219
BSNT_02996 225 ------GCTGACCGCT-----GAAAGCAAAAGTACGGGATACTCCCG--C 261
|||| ||||| ..|||| ||.|..||| | |
BL01176___ynf 220 ATCTTAGCTG-CCGCTTCCGGTCAAGC----GTTCATGAT------GAAC 258
BSNT_02996 262 AGACGTCAGCGGAAAAA-------AAG--CTTTATACTGGCCAAATTTTA 302
|| |||||||.| ||| .|||||.||.||....||.||
BL01176___ynf 259 AG------GCGGAAAGAGCATCTGAAGGCATTTATGCTCGCGGTGTTCTA 302
BSNT_02996 303 TCAATCGTCTTATTTCGGCAAACTTCATG-TTCAACATCACCCGATTATG 351
|||.||.||||||||||..|||...|||| ||.||.|.||
BL01176___ynf 303 TCACTCTTCTTATTTCGATAAAGCGCATGTTTTAAAACCA---------- 342
BSNT_02996 352 TAA 354
|||
BL01176___ynf 343 TAA 345
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