Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05701 and BL01168
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05701___arfM.1.5803.seq
# -bsequence dna-align/BL01168___arfM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05701___arfM-BL01168___arfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05701___arfM-BL01168___arfM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05701___arfM
# 2: BL01168___arfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 513
# Identity: 332/513 (64.7%)
# Similarity: 332/513 (64.7%)
# Gaps: 81/513 (15.8%)
# Score: 1017.0
#
#
#=======================================
BSNT_05701___ 1 ATGAATCAGTGTGACTATTTATTATTTCTGAAACAACTTCCTATGTTTAA 50
|||.|.|.||.||||||.|||||.|||||||||.|.||||||||||||..
BL01168___arf 1 ATGGACCGGTTTGACTACTTATTGTTTCTGAAAAATCTTCCTATGTTTTT 50
BSNT_05701___ 51 TGAAGTGCCTCTATCC-ATTGTCGAAACCTTGCTGAAAAACGGCACGTT- 98
.|.|||.||.|| ||| ||..||.|||...|||||||.|||||.|.|.|
BL01168___arf 51 CGGAGTACCCCT-TCCGATCATCAAAAAGCTGCTGAAGAACGGTAAGGTG 99
BSNT_05701___ 99 -----TATCC--GCGGTTCATGTGATCAGTCTCCATCTTTTCTTCATTCT 141
||||| .|| |.|.|.||.||.|.|||.||.||||||||.
BL01168___arf 100 ATAGATATCCAACCG-----TCTCAGCATTCGCGATCGTTCCTTCATTCG 144
BSNT_05701___ 142 CAATCTGTTTATATTGTATTAAAAG--GCAGTGTCCGTTTTATGGACACA 189
|||||.||.|||.||||.||||||| |.|||| |.||||...||||.|
BL01168___arf 145 CAATCCGTCTATTTTGTTTTAAAAGGAGAAGTG--CATTTTTCCGACAGA 192
BSNT_05701___ 190 AGGCTCCCTGAAG------GGTCGAAAACCGTTGCGCTGTGGGAAAAAGG 233
|||||.||.|||| ||.||| |.||...||||||||||||
BL01168___arf 193 AGGCTTCCGGAAGAATCACGGACGA------TCGCCGAGTGGGAAAAAGG 236
BSNT_05701___ 234 CGATGTGTTTCCGATTGATGAAAAAGGCGGGCTTTATTTATCGCCCTTTA 283
||||||.|||||.||||||.|||||||||..|.||..|||||.||.||||
BL01168___arf 237 CGATGTTTTTCCTATTGATCAAAAAGGCGAACCTTTCTTATCTCCGTTTA 286
BSNT_05701___ 284 TCTCAGTCAATGCCACTTCAGACATTCTGA--------TTCTCAACATCC 325
|.||||||||| |||.| .||||| |.||..|.||.|
BL01168___arf 287 TTTCAGTCAAT---ACTGC-----CTCTGAAACCGCCGTACTTGAAATAC 328
BSNT_05701___ 326 CATATTACATA--TTTAAGAAAATGATGTCTTATCATCCG-CAGCTGCAA 372
| .||.|||| ||.||.|||||||||.||||| |.||| ||..|.||.
BL01168___arf 329 C--GTTTCATAATTTCAAAAAAATGATGACTTAT-AACCGCCAATTACAG 375
BSNT_05701___ 373 ATGAACTTTTTGGCT----ATGCTTCAGCAAAATGTTTTTTGTTCCTATC 418
|.||||||| || .||||.|||||.|||.|.||||.|||.||.|
BL01168___arf 376 ACGAACTTT----CTCATGTTGCTCCAGCAGAATTTATTTTTTTCATACC 421
BSNT_05701___ 419 AATTATTTTTGCGGTATCTGCATACATCACAGGATGAAAACGCC----GA 464
|..|.||||||||.||.|| || ||..|.|.|.| |||.|||.| ||
BL01168___arf 422 AGCTTTTTTTGCGCTACCT-CA-ACTCCTCCGCA-GAAGACGACGTGTGA 468
BSNT_05701___ 465 GCCCGGTTCTTAA 477
BL01168___arf 468 ------------- 468
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