Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04044 and BL01152
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_04044___safA.1.5803.seq
# -bsequence dna-align/BL01152___safA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04044___safA-BL01152___safA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04044___safA-BL01152___safA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04044___safA
# 2: BL01152___safA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1260
# Identity: 739/1260 (58.7%)
# Similarity: 739/1260 (58.7%)
# Gaps: 303/1260 (24.0%)
# Score: 1930.5
#
#
#=======================================
BSNT_04044___ 1 TTGAAAATCCATATCGTTCAAAAAGGTGATTCGCTCTGG--AAAATAGCT 48
||||||||.|||||.||.|||||.||.|||| |||||| |||||.||.
BL01152___saf 1 TTGAAAATTCATATTGTCCAAAAGGGCGATT--CTCTGGAAAAAATCGCG 48
BSNT_04044___ 49 GAAAAGTACGGAGTCGATGTTGAGGAAGTGAAAAAACTCAATACACAGCT 98
||||..||.|.|||.||..||||.|||.|||||||.||.|||.|.|||||
BL01152___saf 49 GAAAGATATGAAGTGGACTTTGAAGAACTGAAAAAGCTGAATTCGCAGCT 98
BSNT_04044___ 99 TAGCAATCCAGACTTAATCATGCCTGGAATGAAAATAAAAGTGCCGTCAG 148
.||||||||||||||.||||||||.||.||||||||.|||||.|||||||
BL01152___saf 99 GAGCAATCCAGACTTGATCATGCCGGGCATGAAAATCAAAGTACCGTCAG 148
BSNT_04044___ 149 AAGGAGTCCCGGTCAGAAAAG-AGCCAAAAGCGGGCAAAAGTCCTGCGGC 197
..|||||.|||||||.||||| || ||.||| .|||.| ||||..
BL01152___saf 149 GGGGAGTGCCGGTCAAAAAAGAAG--AACAGC--TCAATA----TGCGAA 190
BSNT_04044___ 198 CGGGAGT---GTGA----AGCAAGAACATCCATATGCGAAAGAGAAGCCT 240
.||.|.| |..| ||||.||||||||||.|||.|||||.|||||.
BL01152___saf 191 AGGAATTACCGAAAAAACAGCAGGAACATCCATTTGCAAAAGAAAAGCCG 240
BSNT_04044___ 241 AAATCCGTTGTCGATGTAGAAGACACAAAGCCGAAAGAAAAGAAGTCCAT 290
|||..|....|.|||||.|||||.|.|||.||||||||||||...||..|
BL01152___saf 241 AAAAGCAAGCTTGATGTTGAAGATATAAAACCGAAAGAAAAGCCTTCGGT 290
BSNT_04044___ 291 GCCGTATGTCCCGCCGATGCCTAATTTGCA--GGAAAAT---GTGTACCC 335
.||.|||||.|||||..|.||.|| || |||.||| || |..||
BL01152___saf 291 TCCTTATGTTCCGCCTGTCCCGAA----CATCGGACAATCAAGT-TTGCC 335
BSNT_04044___ 336 TGAAGCTG--ATGTGAACGATTATTATGATATGAAA--------CAGCTT 375
|||||..| ||.| ||| ||| || |||.||| ||||||
BL01152___saf 336 TGAAGGCGACATTT---CGA--ATT-TG-TATCAAAGCGTCAATCAGCTT 378
BSNT_04044___ 376 TTCCAGCCTTGGT-CG--CCTCCTAAACCGGAGGAGCCGAAAAAACATCA 422
...||||| || || |||||.|||||..|.| |||||||
BL01152___saf 379 CATCAGCC---GTACGTACCTCCAAAACCTTATG---------AACATCA 416
BSNT_04044___ 423 TGACGGAAATATGGATC--ATATGTATCAT--ATGCAAGACCAATTTCCA 468
.|| |||| ||..| |.||||||.|| ||| |||.|||
BL01152___saf 417 AGA--GAAA---GGCCCCAACATGTATAATCCATG---GACAAAT----- 453
BSNT_04044___ 469 CAACAGGAGGCTATGAGTA--ATATGGAAAATGCAAATTATCCGAATATG 516
|||| |.||..| ||||||||||||..||||||||||||.|.
BL01152___saf 454 ------GAGG--AGGAAAACCATATGGAAAATGTCAATTATCCGAATGTT 495
BSNT_04044___ 517 CCTAATATGCCAAAGGCGCCAGAGGTAGGCGGTGTAGAA---GAGGAAAA 563
|| || ||.|||||.|.|| |||||.||.| ||.|||||
BL01152___saf 496 CC------GC---AGCCGCCAAATGT---CGGTGCAGCAGGTGATGAAAA 533
BSNT_04044___ 564 CGTTCATCA----CACAG--TTCCGAATAT-GCCGATGCCGGCTGT--TC 604
|.|.|| |||.| |.||||||.| ||.|..||.||.|.| ||
BL01152___saf 534 ---TAAGCAGTTTCACGGCATGCCGAATGTAGCTGCAGCGGGATATCATC 580
BSNT_04044___ 605 AGCCTTATTATCATTATCCGGCTCATTTCGTACCGTGTCCGGTG------ 648
|.|.|...||||.||||||| ||| ||.|.||...|.||
BL01152___saf 581 ACCATCCATATCCTTATCCG------TTC-TATCCTGGAGGCTGCTGGAT 623
BSNT_04044___ 649 -CCTGTTTCGCCAATTTTTCCAGGATCAGGATTATGCTATCCGTACTATC 697
||||||||.||..|..|.||.|||||.|||||.|||.||||.|..||||
BL01152___saf 624 TCCTGTTTCACCGGTGCTGCCTGGATCGGGATTGTGCCATCCTTGGTATC 673
BSNT_04044___ 698 CGGCACAAGCTTATCCAATGCATCCGATGCATGGATACCAGCCAGGCTTT 747
||.|..||..||.|||||.|...|||||| |||||..|||.|
BL01152___saf 674 ---CATATCCTGCTCAAATGCCTTATATGCAT------CAGCCTAGCTAT 714
BSNT_04044___ 748 GTATCGC---CTCAGTATGACCCGGGTTATGAAAACCAGCAT----CATG 790
|||||.| ||.|.|||||| |.|.|||| ||.||| ||||
BL01152___saf 715 GTATCTCCTGCTGAATATGAC---GATGATGA----CAACATGGGGCATG 757
BSNT_04044___ 791 AAAA---CAGCCATCACGGA---CATTACGGTTCATACGGTG--CGCCGC 832
|.|| |.|.||||||||| |||.| |||..||.|| .|||
BL01152___saf 758 ACAATGCCGGTCATCACGGATACCATCA----TCAGCCGATGACTGCC-- 801
BSNT_04044___ 833 AATACGCATCTCCGGCTTATGGATCTCCGTATGGACATATGCCGTATGGC 882
|||||.|||| |.||.|| .|| ||||| .|
BL01152___saf 802 -----------CCGGCATATG---CGCCTTA---CCA---GCCGT---TC 828
BSNT_04044___ 883 CC-----TTATTACGGCACTCCCCAA------GTAATG--GGAGCATACC 919
|| || |||| |.|||| ||.|.| ||.|
BL01152___saf 829 CCGGGATTT------GCAC-CGCCAAACGTCGGTCACGCCGGGG------ 865
BSNT_04044___ 920 AGCCTGCTGCGGCTCATGGTTACATGCCATACAAAGATCATGACGACTGC 969
|.|||..|..|||.||.|| ||||| |.||.||||||
BL01152___saf 866 ACCCTAATATGGCACACGG------------CAAAG---AAGATGACTGC 900
BSNT_04044___ 970 GGCTGTGACGGTGATCATCAGCCATATTTCTCTGCGCCTGGCC-ATTCGG 1018
||.|| ||| |||.|||| ||||
BL01152___saf 901 GGGTG---CGG------------------------GCCGGGCCAATTC-- 921
BSNT_04044___ 1019 GAATGGGAGCTTAT--------GGAAGCCCTAATATGCCATATGGCACAG 1060
..|||||.||.| || .||||||||| ||||
BL01152___saf 922 --CCGGGAGGTTTTCCAGGTGCGG-----------CGCCATATGG-ACAG 957
BSNT_04044___ 1061 CTAACCCAAATCCAAAC-CCATATTCGGCA-----GGAGTTTCTATGCCA 1104
.|..|.|||||...|.| ||.|| |||.| ||| ||.|
BL01152___saf 958 ATGCCGCAAATGGGAGCTCCGTA--CGGTATGGGGGGA-----TACG--- 997
BSNT_04044___ 1105 ATGACGAATCAGCCTTCTGTAAACCAAATGTTTGGCCGGCCGGAAGAAGA 1154
||| |.||||||.|.|.....||.||||||..|.|.||||||||.||
BL01152___saf 998 --GAC--AGCAGCCTGCAGGGGGACAGATGTTTAACAGACCGGAAGATGA 1043
BSNT_04044___ 1155 AAATGAGTGA 1164
..|.||.|||
BL01152___saf 1044 TGAAGACTGA 1053
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