Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04041 and BL01151
See
Amino acid alignment /
Visit
BSNT_04041 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_04041.1.5803.seq
# -bsequence dna-align/BL01151___coxA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04041-BL01151___coxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04041-BL01151___coxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04041
# 2: BL01151___coxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity: 382/726 (52.6%)
# Similarity: 382/726 (52.6%)
# Gaps: 219/726 (30.2%)
# Score: 784.0
#
#
#=======================================
BSNT_04041 1 TTGGGTAAAAAAATGACGATCGCTAGCCT-------GATT---CTAATGA 40
||||..|..||..||| .||..| |||| ||..|||
BL01151___cox 1 TTGGACAGCAAGCTGA-------AAGTGTTTTCGGGGATTTTGCTTTTGA 43
BSNT_04041 41 CAGCCGGCTTAACAGCTTGCGGAGCAAACGATAATGCTATGAATGATACG 90
||||.||..||.|.||.||||||.|.|||| |.|||||..||.||
BL01151___cox 44 CAGCAGGTCTATCTGCATGCGGAACGAACG---ACGCTATAGATAAT--- 87
BSNT_04041 91 CGCAATAACGACAATACCCGTCCAATCGGATATTATTCAAATGAAAATGA 140
|.|| |||||||.||.||.|||||||||||||| ||||||
BL01151___cox 88 -GGAA-----ACAATACGCGCCCGATCGGATATTATTC------AAATGA 125
BSNT_04041 141 CGCCGATAGACAGGGAGACGGAATCGACCACGATGGTCCTGTTTCTGAAT 190
.||.|||.|..|.|.| ||..|.||..|.||.|||||||||.|.|||.
BL01151___cox 126 TGCAGATCGTAATGCA---GGTCTTGATAATGACGGTCCTGTTACAGAAA 172
BSNT_04041 191 TAATGGAGGATCA-GAACG------ACGGTAACCGAAACACCACGAATGT 233
|..|.|| .|.|| ||||| ||||| |.|||| ||.||
BL01151___cox 173 TGCTTGA-AAACATGAACGGGAGAAACGGT----GCAACA-----AACGT 212
BSNT_04041 234 AAATAACCGTGACCGTGTTACTGCTGACGATCGTGTTCCTTTGGCAAC-- 281
|||.||.| ||.||.|..|| |.|.|||..|||| ||||
BL01151___cox 213 AAACAATC--GAGCGGGCAAC----GGCAATCCCGTTC------CAACAG 250
BSNT_04041 282 -TGACGGAACATATAAC------AACACGAA-TAACCGAAACATGAATCG 323
.||.|||||.||.|.| .|||.||| ||.|..||.||| |.|
BL01151___cox 251 GCGATGGAACTTACAGCCGGGGAGACATGAATTATCACAACCAT---TTG 297
BSNT_04041 324 --GAATGCAGCGAACAACGGGTATGACA-ACCAAGAAAACAG-------- 362
||||.|.|||.|.|..||.||||||| ||| .||||||.|
BL01151___cox 298 GTGAATACGGCGGATACAGGCTATGACAGACC-GGAAAACCGTAAAATCT 346
BSNT_04041 363 -AAG-------ACTGGCTGC----AAAAATTGCCAACCGTGT----GAAA 396
||| |||||..|| |.|||||| ||...||| ||||
BL01151___cox 347 CAAGGAATATCACTGGGCGCGTCAACAAATTG--AATTATGTTGACGAAA 394
BSNT_04041 397 --CA---AGT------GAA--AAACG----TCAATGACACACAAGTTATG 429
|| ||| ||| ||||| |||..|.|..|| |.|.||
BL01151___cox 395 GCCAGGCAGTCGTAACGAATGAAACGGTCATCATCGCCGTAC--GGTCTG 442
BSNT_04041 430 GT-ATCGGATGAC------CGAG-----------TAGTTATCGCAGTCAA 461
.| |..||.|||| |||| ||| .|..||||.|||
BL01151___cox 443 ATAAAAGGCTGACAAATAACGAGAGAACTCAAATTAG-AAAAGCAGCCAA 491
BSNT_04041 462 AA-----GCCACAGA---GA--GTTCACAAAGTCTGACAGA-GATAATGT 500
|| |||..||| || |||| |||| ||.| || ||..|.|.
BL01151___cox 492 AACATTTGCCGGAGACCGGACCGTTC---AAGT-TGTC-GAGGACGACGG 536
BSNT_04041 501 CGTA-----AAAGCAGCGCGCAACTATGCAAATGGCCG-TGACGTCC--- 541
||.| ||.||.||||| |||||..|| ||| |||
BL01151___cox 537 CGCATTTACAAGGCTGCGCG---------AAATGAACGATGA--TCCTCA 575
BSNT_04041 542 -------AGGTATCAACAGATAAAGGGCTGTTCAGAA-AACTTCATAAAA 583
|||.||| .|.||.|.|.|.| ||| ||| ||..
BL01151___cox 576 GAACATTAGGGATC-GCGGAGACACGAC------GAATAAC-----AATT 613
BSNT_04041 584 TGAACAACCGCTAG------------ 597
|| |||||||.|
BL01151___cox 614 TG---AACCGCTTGCGGAACCAATAA 636
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.