Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04041 and BL01151

See Amino acid alignment / Visit BSNT_04041 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_04041.1.5803.seq
#    -bsequence dna-align/BL01151___coxA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04041-BL01151___coxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04041-BL01151___coxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04041
# 2: BL01151___coxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity:     382/726 (52.6%)
# Similarity:   382/726 (52.6%)
# Gaps:         219/726 (30.2%)
# Score: 784.0
# 
#
#=======================================

BSNT_04041         1 TTGGGTAAAAAAATGACGATCGCTAGCCT-------GATT---CTAATGA     40
                     ||||..|..||..|||       .||..|       ||||   ||..|||
BL01151___cox      1 TTGGACAGCAAGCTGA-------AAGTGTTTTCGGGGATTTTGCTTTTGA     43

BSNT_04041        41 CAGCCGGCTTAACAGCTTGCGGAGCAAACGATAATGCTATGAATGATACG     90
                     ||||.||..||.|.||.||||||.|.||||   |.|||||..||.||   
BL01151___cox     44 CAGCAGGTCTATCTGCATGCGGAACGAACG---ACGCTATAGATAAT---     87

BSNT_04041        91 CGCAATAACGACAATACCCGTCCAATCGGATATTATTCAAATGAAAATGA    140
                      |.||     |||||||.||.||.||||||||||||||      ||||||
BL01151___cox     88 -GGAA-----ACAATACGCGCCCGATCGGATATTATTC------AAATGA    125

BSNT_04041       141 CGCCGATAGACAGGGAGACGGAATCGACCACGATGGTCCTGTTTCTGAAT    190
                     .||.|||.|..|.|.|   ||..|.||..|.||.|||||||||.|.|||.
BL01151___cox    126 TGCAGATCGTAATGCA---GGTCTTGATAATGACGGTCCTGTTACAGAAA    172

BSNT_04041       191 TAATGGAGGATCA-GAACG------ACGGTAACCGAAACACCACGAATGT    233
                     |..|.|| .|.|| |||||      |||||    |.||||     ||.||
BL01151___cox    173 TGCTTGA-AAACATGAACGGGAGAAACGGT----GCAACA-----AACGT    212

BSNT_04041       234 AAATAACCGTGACCGTGTTACTGCTGACGATCGTGTTCCTTTGGCAAC--    281
                     |||.||.|  ||.||.|..||    |.|.|||..||||      ||||  
BL01151___cox    213 AAACAATC--GAGCGGGCAAC----GGCAATCCCGTTC------CAACAG    250

BSNT_04041       282 -TGACGGAACATATAAC------AACACGAA-TAACCGAAACATGAATCG    323
                      .||.|||||.||.|.|      .|||.||| ||.|..||.|||   |.|
BL01151___cox    251 GCGATGGAACTTACAGCCGGGGAGACATGAATTATCACAACCAT---TTG    297

BSNT_04041       324 --GAATGCAGCGAACAACGGGTATGACA-ACCAAGAAAACAG--------    362
                       ||||.|.|||.|.|..||.||||||| ||| .||||||.|        
BL01151___cox    298 GTGAATACGGCGGATACAGGCTATGACAGACC-GGAAAACCGTAAAATCT    346

BSNT_04041       363 -AAG-------ACTGGCTGC----AAAAATTGCCAACCGTGT----GAAA    396
                      |||       |||||..||    |.||||||  ||...|||    ||||
BL01151___cox    347 CAAGGAATATCACTGGGCGCGTCAACAAATTG--AATTATGTTGACGAAA    394

BSNT_04041       397 --CA---AGT------GAA--AAACG----TCAATGACACACAAGTTATG    429
                       ||   |||      |||  |||||    |||..|.|..||  |.|.||
BL01151___cox    395 GCCAGGCAGTCGTAACGAATGAAACGGTCATCATCGCCGTAC--GGTCTG    442

BSNT_04041       430 GT-ATCGGATGAC------CGAG-----------TAGTTATCGCAGTCAA    461
                     .| |..||.||||      ||||           ||| .|..||||.|||
BL01151___cox    443 ATAAAAGGCTGACAAATAACGAGAGAACTCAAATTAG-AAAAGCAGCCAA    491

BSNT_04041       462 AA-----GCCACAGA---GA--GTTCACAAAGTCTGACAGA-GATAATGT    500
                     ||     |||..|||   ||  ||||   |||| ||.| || ||..|.|.
BL01151___cox    492 AACATTTGCCGGAGACCGGACCGTTC---AAGT-TGTC-GAGGACGACGG    536

BSNT_04041       501 CGTA-----AAAGCAGCGCGCAACTATGCAAATGGCCG-TGACGTCC---    541
                     ||.|     ||.||.|||||         |||||..|| |||  |||   
BL01151___cox    537 CGCATTTACAAGGCTGCGCG---------AAATGAACGATGA--TCCTCA    575

BSNT_04041       542 -------AGGTATCAACAGATAAAGGGCTGTTCAGAA-AACTTCATAAAA    583
                            |||.||| .|.||.|.|.|.|      ||| |||     ||..
BL01151___cox    576 GAACATTAGGGATC-GCGGAGACACGAC------GAATAAC-----AATT    613

BSNT_04041       584 TGAACAACCGCTAG------------    597
                     ||   |||||||.|            
BL01151___cox    614 TG---AACCGCTTGCGGAACCAATAA    636


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