Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04018 and BL01139

See Amino acid alignment / Visit BSNT_04018 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence dna-align/BSNT_04018___yajC.1.5803.seq
#    -bsequence dna-align/BL01139___yajC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04018___yajC-BL01139___yajC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04018___yajC-BL01139___yajC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04018___yajC
# 2: BL01139___yajC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     207/270 (76.7%)
# Similarity:   207/270 (76.7%)
# Gaps:           9/270 ( 3.3%)
# Score: 776.5
# 
#
#=======================================

BSNT_04018___      1 ATGATGACTGGCACTTTAGGTACATTGGTTCCTATTATTTTAATGTTTGC     50
                     |||..|| ||   |||  ||.|||||..||||.|||||||||||||||||
BL01139___yaj      1 ATGGAGA-TG---CTT--GGAACATTACTTCCGATTATTTTAATGTTTGC     44

BSNT_04018___     51 GGTCCTTTACTTCTTGCTGATTCGTCCTCAGCAAAAGCAGCAAAAGGCTG    100
                     |||.|||||.|||.|..||||.|||||.||||||||||||||.|||||||
BL01139___yaj     45 GGTTCTTTATTTCCTTTTGATCCGTCCGCAGCAAAAGCAGCAGAAGGCTG     94

BSNT_04018___    101 TACGCCAAATGCAAGAGGAACTGAAAAAAGGCGATTCAGTAGTGACAATC    150
                     |.|||||.|||||.|||||.|||||||||||.|||...||.||.||.|||
BL01139___yaj     95 TCCGCCAGATGCAGGAGGAGCTGAAAAAAGGGGATAAGGTCGTAACGATC    144

BSNT_04018___    151 GGGGGATTGCACGGTACTGTTGACTCTATCGACGAAAGCAAAGTCGTAAT    200
                     ||.||..|||||||.|..||.||.||.||.|||||||||||.||.||.||
BL01139___yaj    145 GGCGGCCTGCACGGCATCGTGGATTCAATTGACGAAAGCAAGGTTGTCAT    194

BSNT_04018___    201 TAAGACTGGTGATAACACACGTCTTACGTTCGACCGCCGCGCGATCAGAG    250
                     .||.||.||.||.||.||.|||||.||.||||||||||||||.|||||||
BL01139___yaj    195 CAAAACAGGCGACAATACCCGTCTGACATTCGACCGCCGCGCAATCAGAG    244

BSNT_04018___    251 AAGTTTCTGCTGCTGAATAA    270
                     |.|   |..|.||.|||||.
BL01139___yaj    245 AGG---CGTCAGCAGAATAG    261


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