Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04050 and BL01136
See
Amino acid alignment /
Visit
BSNT_04050 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_04050___nifS.1.5803.seq
# -bsequence dna-align/BL01136___nifS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04050___nifS-BL01136___nifS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04050___nifS-BL01136___nifS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04050___nifS
# 2: BL01136___nifS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity: 823/1330 (61.9%)
# Similarity: 823/1330 (61.9%)
# Gaps: 278/1330 (20.9%)
# Score: 2402.5
#
#
#=======================================
BSNT_04050___ 1 ATGGAGGAAGACCGGATGATTTATTTAGATTATGCAGCGACAACGCCTAT 50
.||||||||.|.||||||||||||||.||.||
BL01136___nif 1 ---------------GTGATTTATCTTGATTATGCAGCGACGACACC--- 32
BSNT_04050___ 51 TTGTG-------AGGAAGCCCTT--ACTGTATATCAGAAGCTTAGTATGG 91
| |.|||| |||| || |..|.|||.||.|||||.|..|
BL01136___nif 33 ----GGCATCAAAAGAAG-CCTTGGAC-GCGTTTCAAAAACTTAGCACAG 76
BSNT_04050___ 92 ATATGTACGGAAATGCCAGCAGCCTGCATGATGCAGGAGGAAAAGC--AA 139
|..|.|||||||||.|.|||||.|||||.|||||||||||.||||| ||
BL01136___nif 77 ACGTATACGGAAATTCGAGCAGTCTGCACGATGCAGGAGGGAAAGCCGAA 126
BSNT_04050___ 140 AGCACATACTGGAGTACTGCCGTGAAAAAATCGC-CAAC----ATCATTG 184
| ||||..||...|.||||||..|||..||.|| .||| |||
BL01136___nif 127 A--ACATTTTGCGCTGCTGCCGCCAAAGGATGGCAGAACTTTTATC---- 170
BSNT_04050___ 185 GCGGAGAAGCAAG-CGGCATCTATTTTACAAGCGGCGGCACTGAATCCAA 233
|||||||| ||| .|||.|.||||||||.|||||.|||||.|||.||||
BL01136___nif 171 -CGGAGAAG-AAGAAGGCGTTTATTTTACGAGCGGAGGCACCGAAGCCAA 218
BSNT_04050___ 234 TTTTCTGGCCATTCAATCATTGCTAAACGGCCTGCC--------AAAAAC 275
.|||.|.||.|||||.||..|..||||.||.||.|| ||||.|
BL01136___nif 219 CTTTTTAGCGATTCACTCCATCTTAAATGGACTTCCCGCCGGGAAAAAGC 268
BSNT_04050___ 276 GAAAAGACATTTTATTATGACTGCCATGGAGCATCAGTCCATTCATAATT 325
| |.||||| |||||.|..||||||||||||||.||.||||
BL01136___nif 269 G------CTTTTTA--ATGACAGAAATGGAGCATCAGTCGATCCATA--- 307
BSNT_04050___ 326 GCGCTGCTTTTTTGGAACAGCA------------GGGATATGATGTAACA 363
|||||.|||.||| |||||.|||||| .
BL01136___nif 308 ---------TTTTGAAACGGCATCTCGAGATGCTGGGATTTGATGT---C 345
BSNT_04050___ 364 GTCAT--TGAA-CCGAATGAATACGGGC-TTATTACCGAGGAAATATTAC 409
|.|.| |||| ||||||| .|.|.||| |.|||||...|||.| |||
BL01136___nif 346 GACTTGATGAAGCCGAATG-CTTCAGGCATCATTACAACGGATA---TAC 391
BSNT_04050___ 410 TAG-------CCCATATCCGGCCGGAAACAGGCCTTGTATCTATTCAGCA 452
|.| || ||||.|||||.||.||.||.||.||.||||||||
BL01136___nif 392 TTGAACGGCACC----TCCGCCCGGATACGGGTCTGGTTTCGATTCAGCA 437
BSNT_04050___ 453 TGCAAATTCTGAAACCGGGATCATTCAGCC-CATTCAACGCCTGTCTTCA 501
|||.|||||.|||||.||..||||.||||| |...|||.| ||.||..|.
BL01136___nif 438 TGCCAATTCAGAAACAGGCGTCATCCAGCCTCTGGCAAAG-CTCTCGGCT 486
BSNT_04050___ 502 TACCTGCACAATAAG-GGGA--TTCTTCTT-CATTGCGAC-GCTGTTCAA 546
||||||| ||||| |||| |.| |||| ||..||||| || ||.||.
BL01136___nif 487 TACCTGC---ATAAGCGGGACGTGC-TCTTGCACAGCGACTGC-GTACAG 531
BSNT_04050___ 547 ACGTTTGGAAAGATCCCGATCAATACAAAAAATCTGGGAGTAGATGCACT 596
||.||||..|||||.|||.||...|...|..|.||.||.|..|||||..|
BL01136___nif 532 ACATTTGCCAAGATTCCGGTCCGCATTGATGAGCTCGGCGCTGATGCCTT 581
BSNT_04050___ 597 CTCAATGTCCAGCCATAAAATCCACGGTCCAAAAGGAGTAGGGGCGGTCT 646
.||..|.||.|||||.|||.|..||||.|||||||||||.|||||.||||
BL01136___nif 582 ATCGGTCTCAAGCCACAAAGTATACGGCCCAAAAGGAGTTGGGGCTGTCT 631
BSNT_04050___ 647 ATATCCGGCCGGATGTCCCTTGGAAACCCGTTTATCATCTGACTACT--- 693
||||.|||||||.|||....|||||||||||.||.| |.|.| |||
BL01136___nif 632 ATATTCGGCCGGGTGTAAACTGGAAACCCGTCTACC--CGGGC-ACTTTG 678
BSNT_04050___ 694 CACGAATACGGATTCAGAGCCGGCACCGTAAATGTTCCCGGGATCGGTGC 743
||.|||.||||.||.|.|..|||||||||.|||||.||.||.|||||.||
BL01136___nif 679 CATGAAAACGGCTTTAAAAGCGGCACCGTCAATGTCCCTGGAATCGGCGC 728
BSNT_04050___ 744 CTTCACTGCCGCTGCAGAATTGATCGTAAGCGA-AATGGAAAAACAG-AT 791
.||||.|.||||||||||.| ||| ||| ||||.| ||
BL01136___nif 729 TTTCATTACCGCTGCAGATT----------CGACAAT----AAACCGCAT 764
BSNT_04050___ 792 --ATCCCGC--------AAT-----GAG--GCATTAAGAACATACTTTCT 824
||.|||| ||| ||| || |..||...|||||
BL01136___nif 765 GGATGCCGCGCATCTCAAATTCCAGGAGCTGC-----GCGCAGGTTTTCT 809
BSNT_04050___ 825 ------------AGACCAAATCCGTATTCGGTCTCTCCCTGTAACCCTTG 862
|||| |||...||.||.||..||||||
BL01136___nif 810 GGAAGGAGTAAAAGAC------------CGGAAGCTTCCCGTCTCCCTTG 847
BSNT_04050___ 863 CAG---CAGACACTTCG--AAAGCAGAATG-TCTTCCGCATATTATAGGG 906
|.| |.|| |||| |||...|.||| |||.||||||||||||||.
BL01136___nif 848 CTGTGCCCGA---TTCGGCAAATTCGCATGTTCTGCCGCATATTATAGGT 894
BSNT_04050___ 907 TGTTTTTTTCACTCATTTGAAGGACAATATGTTATGTTAGAATGTAATCG 956
|||||||||||.||.|||||||||||||||..||||.|.|||||||||||
BL01136___nif 895 TGTTTTTTTCATTCCTTTGAAGGACAATATACTATGCTGGAATGTAATCG 944
BSNT_04050___ 957 GAGTAATATTTGCATTTCAACCGGCAGCGCTTGTTCTGCAGGTTACCACG 1006
|||....|||||||||||.|||||.|||||.|||||.||.||.||.||.|
BL01136___nif 945 GAGAGGAATTTGCATTTCTACCGGAAGCGCGTGTTCAGCGGGCTATCATG 994
BSNT_04050___ 1007 GTCCGTCTGAA-ACAATGAAAGCATTAAGAAAAACC----GAAC---AAG 1048
..||.|| ||| ||.|||||||| || ||.| |.|
BL01136___nif 995 AGCCTTC-GAATACGATGAAAGC-----------CCTTTTGATCCCTAGG 1032
BSNT_04050___ 1049 AAGCT----CTGCAATTTATCCGCATCTCTTTTGGCAGGC-ATACAACAG 1093
.|||| ||.|||||..||||.||.||.||.|| |.|| ||||.|||
BL01136___nif 1033 GAGCTCGCGCTTCAATTCGTCCGGATTTCATTCGG-ATGCGATACGACA- 1080
BSNT_04050___ 1094 CTGAACAGCTGGAACAGTTATTACATACGTTTACAGTGCT-TTGG----- 1137
||| |||| |.|||.|.|| ||| ||||
BL01136___nif 1081 ------AGC--GAAC-----------ATGTTGATAG-GCTGTTGGACGTT 1110
BSNT_04050___ 1138 ---GAACAAA---------AGAAAGGAGA--ATTTGATATTGACCGAAGA 1173
|||.|.| |||||||||| ||..| ||||||.||.|.
BL01136___nif 1111 CTTGAAGATATGATGAATGAGAAAGGAGACCATCGG--ATTGACAGACGG 1158
BSNT_04050___ 1174 ATTAAAGCTAATGGGCGCCAACAGGCGTGA 1203
||||||.||.|.|||.|| |||
BL01136___nif 1159 ATTAAAACTTACGGGAGC---------TGA 1179
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.