Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04007 and BL01127
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_04007___yrvE.1.5803.seq
# -bsequence dna-align/BL01127___recJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04007___yrvE-BL01127___recJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04007___yrvE-BL01127___recJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: BL01127___recJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2477
# Identity: 1696/2477 (68.5%)
# Similarity: 1696/2477 (68.5%)
# Gaps: 244/2477 ( 9.9%)
# Score: 5569.5
#
#
#=======================================
BSNT_04007___ 1 ATGTTAGCGTCAAAAATGCGATGGGAAAT-CCAGCGACCAGATCAGGATA 49
||||||||||||||||||||.|||||..| |.|.|| ||.||..|.||.|
BL01127___rec 1 ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACG-CCCGACAAAGAAA 49
BSNT_04007___ 50 AGGT----CAAATCACTCACAGAACAATT--GCATATAACACCTCTTGTT 93
|||| || .|||.|.|.|...|| || ||.||.||.||||..
BL01127___rec 50 AGGTGGAGCA----GCTCGCCGGAAGGTTAGGC--ATTACTCCCCTTGCC 93
BSNT_04007___ 94 GCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGC--AGAAAGC-GCT-- 138
||.||..|||||||.|..|||||.|..|||||.|| |.||||| .||
BL01127___rec 94 GCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTC 143
BSNT_04007___ 139 AGGCTGTTTTTACATACAAAGGATGC-CGATTTTTATGATCCTTTTGAAA 187
| ||||||.||...||.||||| || ||||.|.|||||||.|....
BL01127___rec 144 A-----TTTTTATATGGCAATGATGCACG-TTTTCACGATCCTTATCTGC 187
BSNT_04007___ 188 TGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAA 237
||||||..|||.||.||||.|.|...|||||.||||||||.||||||.|.
BL01127___rec 188 TGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGAT 237
BSNT_04007___ 238 CAAGAAAAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACAAG 287
|||||||||||||||||.||.|||||||||||.||.||.||.||.|||||
BL01127___rec 238 CAAGAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAG 287
BSNT_04007___ 288 TACGTCAGTAATGCTTCACACGCTGCAAAAACTG-TCGGCTCAAGTTGAT 336
.|||.|.||..|..|.||.|.|.|| |||||.|| ||.||.||||..|||
BL01127___rec 288 CACGACTGTCCTTTTGCAAATGTTG-AAAAAATGTTCAGCACAAGCCGAT 336
BSNT_04007___ 337 TTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGC 386
|||||||||||||||||.|||||||||||.||.||.||.||||||..|||
BL01127___rec 337 TTTTATATACCTGACCGCTTTAAAGAAGGGTACGGTCCGAATGAAGCGGC 386
BSNT_04007___ 387 GTTTCGTTCGATTAAAG-ATCGGGGCTTCTCTTTGATCATTACGGTTGAT 435
.|||||...|||.|||| ||| .||||..||.|||||||||||.|||||.
BL01127___rec 387 CTTTCGCGGGATCAAAGAATC-AGGCTATTCATTGATCATTACAGTTGAC 435
BSNT_04007___ 436 ACAGGAATTGCCGCTGTGCATGAAGC-GAAGGTGGCAAAGGAACTCGGAC 484
|||||.|||||||..||.|||||||| ||| ||.||.||.||.|||||..
BL01127___rec 436 ACAGGCATTGCCGGCGTTCATGAAGCTGAA-GTCGCTAAAGAGCTCGGCA 484
BSNT_04007___ 485 TGGATGTCATCATTACTGATCATCATGAACCGGGACCGGAGCTTCCGGAT 534
|.||..|.||||||||.|||||.|||||.|||||.||.|...|.||||||
BL01127___rec 485 TCGACCTGATCATTACGGATCACCATGAGCCGGGTCCCGTTTTGCCGGAT 534
BSNT_04007___ 535 GTCCATGCGATCGTCCACCCGAAGCAGCCTGGCTGCACTTACCCGTTTAA 584
|...||||||||.|.||.|||||.|||||.||||||...||.||.|||||
BL01127___rec 535 GCTTATGCGATCATTCATCCGAAACAGCCGGGCTGCGGCTATCCATTTAA 584
BSNT_04007___ 585 AGAGCTTGCCGGGGTTGGAGTCGCGTTTAAGCTTGCCCACGCTTTATTGG 634
||||||||||||.||.||.||.||.||||||||||||||.||.||....|
BL01127___rec 585 AGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACG 634
BSNT_04007___ 635 GTGAACTTCCTGATGAACTGCTTGACCTGGCGGCTATCGGCACCATTGCC 684
|.||.|||||.||.||..||||.|||||....||.|||||.||.||||||
BL01127___rec 635 GAGAGCTTCCGGAAGATTTGCTCGACCTTTGTGCGATCGGTACGATTGCC 684
BSNT_04007___ 685 GATCTAGTCCCGCTGCATGACGAAAACAGATTAATTGCAACACTAGGACT 734
|||||.||.|||||.|||||.||||||||....||.||.|..|..||..|
BL01127___rec 685 GATCTTGTGCCGCTTCATGATGAAAACAGGCAGATAGCCAAGCGCGGCAT 734
BSNT_04007___ 735 TGAA-AGGCTTCGACGG---ACAAATCGGCTCGGCTTAAAAGAGCTG--- 777
.||| || ||| .|| ||.||.||.|..||.|||||||.||||
BL01127___rec 735 GGAACAG--TTC--AGGAAAACGAAGCGTCCAGGATTAAAAGCGCTGGCG 780
BSNT_04007___ 778 ---ATTAAGCTGTCAGGCGGAGACATCGGAG-------AAGCGAACGAAG 817
||| |.||||| ||||| |.|||.|.||||
BL01127___rec 781 AAAATT---------GCCGGAG----CGGAGATACATAACGCGGATGAAG 817
BSNT_04007___ 818 AAACAGTCGGATTTCAGCTCGCACCAAGGCTGAATGCCGTCGGAAGAATC 867
|.||..||||.|||||..||||.||..|..|.||.||.|||||.|||||.
BL01127___rec 818 AGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATT 867
BSNT_04007___ 868 GAACAGGCGGATCCCGCTGTTCATTTGCTTATGTCAGAGGATTCG--TTT 915
||||||||.||.||.||.|||.|..|.||.|...||||.|| || ...
BL01127___rec 868 GAACAGGCTGACCCGGCCGTTTACCTCCTGAACACAGAAGA--CGAAAGA 915
BSNT_04007___ 916 GAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGC--TGAACAAAGAGCGC 963
|||||||||||||||||.|..||.||..|| || |||||||.||||||
BL01127___rec 916 GAAGCGGAAGAGCTTGCTGAGGACATCAAC--GCCTTGAACAAGGAGCGC 963
BSNT_04007___ 964 CAAAAAATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACA 1013
||||||||.||||...|.|||||.||.|||||..||.|.|||.|.||..|
BL01127___rec 964 CAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGA 1013
BSNT_04007___ 1014 GCAAGGGCTCGATCAAACTGCAATTGTCGT-----GGCCAAAGCCGGATG 1058
|.||||.||.||.||..|||..||.||||| ||| |.||.||
BL01127___rec 1014 GGAAGGCCTTGACCAGCCTGTGATCGTCGTAGCGCGGC-----CGGGCTG 1058
BSNT_04007___ 1059 GAACCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTTGTGGACCGCTTCT 1108
|||.||.||.|||||.||.||.|||||||||||||||||.||.||.||.|
BL01127___rec 1059 GAATCCTGGCGTCGTGGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTT 1108
BSNT_04007___ 1109 ACCGACCGGCCATTGTTCTTGGCATTGATGAAGAAAAGGGAATCGCTAAA 1158
||.|.||.|||||.||.||||||.|.|||||||||||.|||||.||.|||
BL01127___rec 1109 ACAGGCCCGCCATCGTCCTTGGCGTCGATGAAGAAAAAGGAATTGCCAAA 1158
BSNT_04007___ 1159 GGTTCGGCCCGAAGCATCAGAGGCTTTAATTTATTTGAGAGCCTTTCTGA 1208
||.||.||.||.|||||||.|||.|||.||||||||.|.|.||||||.||
BL01127___rec 1159 GGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAACCTTTCCGA 1208
BSNT_04007___ 1209 ATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCTGCGGGGA 1258
.|||.|.||||||||.||.||.|||||||||||.||.|||||.||.||.|
BL01127___rec 1209 GTGCCGGGATATTCTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAA 1258
BSNT_04007___ 1259 TGACGCTGAAAGCT-GAAGATGTGCCGGATTTGCG----------AA--- 1294
||||||| .||.|| |||||.||..|||.|.||.| ||
BL01127___rec 1259 TGACGCT-CAACCTGGAAGACGTTTCGGCTCTGAGGGAGAGAATCAACCG 1307
BSNT_04007___ 1295 GCAGGCTGAACGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTATT 1344
.|||||||| ||||| ..||.||.||.|..||||||||.
BL01127___rec 1308 TCAGGCTGA-------AGCGG------TTCTGACCGAGGCAGATTTTATC 1344
BSNT_04007___ 1345 CCCGTACAGGAAGTCGACCTTGT-CTGCAGCATCGAGGACATTACAGTTG 1393
|||||.||.||.||||| .|||| ||||.|..||||.||.||..|.||||
BL01127___rec 1345 CCCGTCCAAGACGTCGA-TTTGTGCTGCCGGCTCGAAGATATATCGGTTG 1393
BSNT_04007___ 1394 AAAGCATCGCAGAAATGAACATGCTGTCTCCTTTTGGCATGCTTAACCCG 1443
|.|||||.||.|||||||||.|||||.|.||.||.||||.|...||||||
BL01127___rec 1394 ACAGCATTGCCGAAATGAACTTGCTGGCGCCGTTCGGCACGGGAAACCCG 1443
BSNT_04007___ 1444 AAACCGCACGTTCT---------CGTAGAAAACGCAGTACTGGAAGATGT 1484
||.|||..|||||| ||||.||| |.||.||.|.
BL01127___rec 1444 AAGCCGTTCGTTCTTGTCAGCGACGTAAAAA---------TTGATGACGC 1484
BSNT_04007___ 1485 CCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT----------GACG 1524
|.|.||.||.||.||.||.||.|.||||.|.||..| ||||
BL01127___rec 1485 CAGAAAAATCGGCGCCAACAAGAATCATTTGAAGCTTGTGCTTGCAGACG 1534
BSNT_04007___ 1525 ATCAGAAACGAGTCGTCCCAGCTTGATTGCGTCGGTTTTAATAAAGGCGA 1574
|...||| |.||||.||||||.||||.|||.||||||||||
BL01127___rec 1535 ACGGGAA----------CAAGCTCGATTGCATCGGATTTTATAAAGGCGA 1574
BSNT_04007___ 1575 GCTTCAAGAAGGCATCGTACCGGGTTCAAGAATTTCCATTGTCGGTGAGA 1624
..|..|||||||.|||||.||.||..|||..||.||.||||||||.||..
BL01127___rec 1575 TATCGAAGAAGGAATCGTTCCTGGAGCAAAGATCTCGATTGTCGGGGAAC 1624
BSNT_04007___ 1625 TGTCAATCAACGAATGGAACAATCGAAAAAAGCCGCAGCTTATGATAAAG 1674
||||.||.|||||||||||.||..|||||||.||||||||.|||||.||.
BL01127___rec 1625 TGTCGATTAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAA 1674
BSNT_04007___ 1675 GATGCCGCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGAC 1724
|||||.||.||...|||||||||||||||||||.|..|||||||||||.|
BL01127___rec 1675 GATGCGGCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTC 1724
BSNT_04007___ 1725 GTGGGAAGACACAGTTT----------CCGCCCTTCCATCTGCTAAACGG 1764
.||||||||.|.|.|.| || ||||.||||||
BL01127___rec 1725 ATGGGAAGAAAAAATATTGAAGCTGGACC----------CTGCGAAACGG 1764
BSNT_04007___ 1765 GC---CATTGTCTCTTTCAAAGAAGACTCAACAACATTACTTCAAA-CTG 1810
|| || |||..|||...||.|| |||||.| .|||| |||
BL01127___rec 1765 GCGTGCA---TCTGCTTCCGCGAGGA---AACAAAA-----GCAAAGCTG 1803
BSNT_04007___ 1811 -------AAGACCTTCGCCG-AGAAG---TGCACGTCATCA---GTTCTA 1846
.||.|||| | ||||| ||..|||||||| |..||.
BL01127___rec 1804 GCAGGGACAGGCCTT----GAAGAAGAGCTGACCGTCATCAGCGGCCCTG 1849
BSNT_04007___ 1847 AAGATCAAGCAAAGGCGTTTGACCTCGATGGTGC--ATATATTGTATTAC 1894
||||| |||.||..|.|.|||||.|| |.|| .|||...|||||..
BL01127___rec 1850 AAGAT---GCAGAGCGGCTCGACCTTGA--GAGCCGTTATGCGGTATTTA 1894
BSNT_04007___ 1895 TGGATCCGCCGCCTTCGCTGGACATGCTCGCACGTTTACTGGAAGGCAAG 1944
|.|||...||||..|||||.|||||..|.|..|.|.||.|..|.|||||.
BL01127___rec 1895 TAGATATTCCGCAGTCGCTCGACATCTTTGATCATGTAATAAACGGCAAA 1944
BSNT_04007___ 1945 GCGCCTGAGCGGATATATTTTA-TTTTTCTCAATCATGAGGACCACTTTT 1993
..||..|||||.||.|||.|.| |||||.||||||| ||.||.||.||||
BL01127___rec 1945 AAGCTGGAGCGCATTTATCTGATTTTTTATCAATCA-GACGAACATTTTT 1993
BSNT_04007___ 1994 TATCAACTTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTG 2043
|.|||||.||.||..||||.||..|.|||||||||||.|||||.|||.|.
BL01127___rec 1994 TCTCAACATTCCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTC 2043
BSNT_04007___ 2044 CTGAAAAGAGGCGCTTTTGACGTGAAAAAACACGGTTCAGAGCTTGCAAA 2093
|||||||||||..||||||||.||...|||.||||...|||||||||.|.
BL01127___rec 2044 CTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCGGAGAGCTTGCCAG 2093
BSNT_04007___ 2094 ACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTT 2143
|||||||||||||.|....||.|||||..||||.||||||||||||||||
BL01127___rec 2094 ACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTT 2143
BSNT_04007___ 2144 TTGATCTCGGTTTTGTTAAAATAGAGAATGGTGTGCTGTCTGTTGT---- 2189
||||.|||||||||||||.|||||||||||||||..|.||||||||
BL01127___rec 2144 TTGAGCTCGGTTTTGTTACAATAGAGAATGGTGTTTTATCTGTTGTTTAT 2193
BSNT_04007___ 2190 -GAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGCG 2238
..||.|| |||| |||||.||||||||.||..||||.||.|.||..
BL01127___rec 2194 CATGCCGA--AAAG---CGCGATTTAACAGATTCTGAAACCTACCGGGAA 2238
BSNT_04007___ 2239 AAACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGA 2288
|||||||..|||||.|||.||||.||||||||.|.|||||||||.||.||
BL01127___rec 2239 AAACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGA 2288
BSNT_04007___ 2289 AGAGCTGAAGGAATGGCTGAATAAGCTGAT----GAAACAAGATTCAGAG 2334
.|||||.||..|.||||||.||||||.||| |||| ||| |.|..
BL01127___rec 2289 TGAGCTTAAACAGTGGCTGGATAAGCGGATGGCGGAAA-AAG---CCGGC 2334
BSNT_04007___ 2335 GCTTATGAAAGTACGAGGAGGACATAA 2361
|||||| ||||||.||
BL01127___rec 2335 GCTTAT-AAAGTATGA----------- 2349
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