Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04002 and BL01120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_04002___yrvJ.1.5803.seq
# -bsequence dna-align/BL01120___yrvJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04002___yrvJ-BL01120___yrvJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04002___yrvJ-BL01120___yrvJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04002___yrvJ
# 2: BL01120___yrvJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1856
# Identity: 1050/1856 (56.6%)
# Similarity: 1050/1856 (56.6%)
# Gaps: 454/1856 (24.5%)
# Score: 2881.5
#
#
#=======================================
BSNT_04002___ 1 TTGCACACCTTTTTGATTGTATTTACGCTTAGTATAAACAAATCATTTTA 50
BL01120___yrv 0 -------------------------------------------------- 0
BSNT_04002___ 51 TTTTTATTTAAAAATCAGAAAGGACTTTACGATATTAAACAAGAATGCTT 100
BL01120___yrv 0 -------------------------------------------------- 0
BSNT_04002___ 101 TTTTAATGATCATCAGAAAGGAGGACACAATGAACAAGAAA----TACTT 146
|||||.||.|.| || |
BL01120___yrv 1 -----------------------------ATGAAAAAAAGAGCGGTA--T 19
BSNT_04002___ 147 TG-TCCTTATTGTATGTATTATTTTCACCGCAGCGCTATTCCCGACCTTT 195
|| ||| |||..||.||..| .|||||.|.| .|..|||||
BL01120___yrv 20 TGATCC------TATCGATGATGCT---GGCAGCACAA---GCAGCCTTT 57
BSNT_04002___ 196 T---CATCCGT----TACAGCTGCTCAA------GGAGAAGCGGTCATCG 232
| ||| ||| .||||||.||..| ||.|||||.||.||.|
BL01120___yrv 58 TATACAT-CGTCAAACACAGCTTCTGCAGCCATCGGGGAAGCCGTGATTG 106
BSNT_04002___ 233 CAACAGATGAAACGAACGTCAGAAGCGGCCCTGGGCTTAGCTACGGCAT- 281
|.||.|||||||..||.|||||||||||.|||||.||.|||.|||..||
BL01120___yrv 107 CCACCGATGAAATCAATGTCAGAAGCGGGCCTGGACTGAGCCACGAAATC 156
BSNT_04002___ 282 -TACAGCG------GAAGTAAAAAAGGGAGAACGCTATCCAATT-TTAAA 323
| ||||| |.||.|| .|||.|||||||.||| ||.||
BL01120___yrv 157 GT-CAGCGTCGTCAGCAGGAA-------TGAAAGCTATCCGATTCTTGAA 198
BSNT_04002___ 324 GGAAGATGGAGACTGGGTGCAGATACAGCT---TGGTTCCGGAGAAAAGG 370
|||...||.||.||||||||.||.||||| .|| |||..||||.|
BL01120___yrv 199 -GAACGCGGGGATTGGGTGCAAATCCAGCTGAACGG---CGGGCAAAAAG 244
BSNT_04002___ 371 GCTGGGTAGTCTCCTGGCTTATTACAAAGGAAGACCAGGCCAGCACAAG- 419
|||||||.||.||||||||.|| ||| |||.| || ||| ||||
BL01120___yrv 245 GCTGGGTCGTATCCTGGCTGAT--CAA--GAAAA--AG---AGC-CAAGT 284
BSNT_04002___ 420 CTCCTCAGGAAGCAG---TGACACTGTGACATC---AACAGACCCCGATC 463
|||| |||.| |||..|.| |||| ||.||.|.| |||
BL01120___yrv 285 CTCC------AGCGGATCTGATTCCG---CATCGGGAAAAGTCAC--ATC 323
BSNT_04002___ 464 TGCGGA--------TGAGAAGC------GGCCCGGGCACTTCCTACGAAG 499
|.|.|| ||||||.| |||||.||||||||.||.||||
BL01120___yrv 324 TTCCGAAGCAAACTTGAGAATCAGAAAAGGCCCCGGCACTTCATATGAAG 373
BSNT_04002___ 500 TCATCGGCAAATTCCCGCAAGG----CAGCCAAGCATCTGTCATTGATAA 545
||...|||..||||||..|||| ||| .|||.| .||.|||
BL01120___yrv 374 TCCAAGGCGTATTCCCTGAAGGAGAACAG-------GCTGAC-CTGCTAA 415
BSNT_04002___ 546 AGATTCGGGC------TGGATCAAGATATCCTATCACAGTGCCACCGGGT 589
||| |.|.| |||||.|||||.||||||||.|....|||.||.|
BL01120___yrv 416 AGA--CCGACGGAAAATGGATAAAGATTTCCTATCAGAACATCACAGGCT 463
BSNT_04002___ 590 GGGTATCATCTGAATATGTCACATCAGG----AGGC----AGCAGT-TC- 629
||||.|..||.||.||||||| ||||.| |||| |.|||| ||
BL01120___yrv 464 GGGTCTATTCAGATTATGTCA-ATCAAGGTTCAGGCGCGAAACAGTCTCA 512
BSNT_04002___ 630 AGCGTCTGATGAGAGTGACCAAACCGAGGATTCCGGTGCGTCAACGA--- 676
|.||||| |.|.||.| |||.|||.| |
BL01120___yrv 513 ATCGTCT--------TCATCACA-------------TGCTTCATC-ATCA 540
BSNT_04002___ 677 ----CGGGCACAGTCGGTGTTTCTTCGCTAAATGT-AAGAGCCTCCGCCT 721
||||.||.|||||.||.||..|..||||||| |.||| |.|.||.|
BL01120___yrv 541 AAATCGGGAACGGTCGGCGTATCCACCTTAAATGTCAGGAG-CACAGCTT 589
BSNT_04002___ 722 CACATGACG--CGGCAATTATAACAAAACTTGATCGCGGAACGAAA--CT 767
|.|||.|.| ||| |||||..|.|..||..| .|||||.|.|| .|
BL01120___yrv 590 CCCATCAAGGCCGG--ATTATTGCCACGCTCCA--ACGGAATGCAAGTGT 635
BSNT_04002___ 768 GACGGTTCTCAACGAGAAAAATGGCTGGGCTCACATTGAGGTGAACGGGC 817
||||.||.|.|||||..|..|.||||||..|.|.||.||..|.||.||.|
BL01120___yrv 636 GACGATTTTAAACGAACAGCACGGCTGGTATGAAATCGAATTTAATGGAC 685
BSNT_04002___ 818 TAAAAGGCTGGGTTGCAAGCCATTACCTTTTGACTAGTTCTGTTC----- 862
.|||||||||||..||||||||.|| || ||| ||
BL01120___yrv 686 AAAAAGGCTGGGCCGCAAGCCACTA---------TA-TTC---TCGAAGG 722
BSNT_04002___ 863 ------------CAGCTGA-----TGATTC-AGCAAATGCCGGCAGTTCA 894
||||.|| .||..| |||| ||||
BL01120___yrv 723 AAACAAACAGAACAGCGGAACCTCGGAAACAAGCA-------GCAG---- 761
BSNT_04002___ 895 TCCTCCGCTAA--AAAA------GCCTATATCATGTACGGAGGAACGAAT 936
||||| || |||| |||...|||.||||.|.|||.||.|||
BL01120___yrv 762 --CTCCG--AAGCAAAACGGCAGGCCACCATCGTGTATGAAGGCACAAAT 807
BSNT_04002___ 937 CTAAGAAGTGATGCGTCAACATCAGCTTCAATCGTTGAGCGTGCTGCCAA 986
.|.|||||.|...|.||.|||||..|..|.|||||..|.||..|.|..||
BL01120___yrv 808 GTTAGAAGCGGGCCTTCGACATCCTCAGCGATCGTCAAACGCACGGGAAA 857
BSNT_04002___ 987 AGGAGATTCATACACCATTACCGGTTCAAAGGGAAGCTGGTATGAAATAA 1036
|||.||.||.|||.|.||...|..|.||||.|||..||||||||||||.|
BL01120___yrv 858 AGGCGAGTCTTACCCGATCGTCTCTACAAAAGGAGACTGGTATGAAATCA 907
BSNT_04002___ 1037 AGCT-TGATAACGGGCAAACTGCTTATGTAGCCAATTGGGTGGTCCAAAC 1085
|.|| |.| |||||..|..|.||||||||.||.|..|||||.||.||.||
BL01120___yrv 908 AACTGTCA-AACGGCGATTCCGCTTATGTCGCAAGCTGGGTCGTTCAGAC 956
BSNT_04002___ 1086 ---------------------------GTCTAAAAGCGCAGAA------- 1101
.||.||||||||||.|
BL01120___yrv 957 TGTTGACCAGGCAGGCTCAGCCGGAGATTCGAAAAGCGCAGCACCGCCTT 1006
BSNT_04002___ 1102 ----GAAGCAGGTGAACCGCCAGTCTCTGATTCCCCGTCTGGAAACGGCT 1147
.|||| |||.||.| ||.||| |||.
BL01120___yrv 1007 TGGCAAAGC-GGTCAAGC-------------------TCGGGA---GGCA 1033
BSNT_04002___ 1148 CTCTAAACAATAAAACGATTATTGTTGACCCGGGACATGGAGGAAAAGAC 1197
|..|.||.|||||||||.||.|..|.||..|.||||||||||||.|.|||
BL01120___yrv 1034 CAATCAAAAATAAAACGGTTGTCATCGATGCCGGACATGGAGGACATGAC 1083
BSNT_04002___ 1198 AGCGGAACGATCGGGTATTCGGGGAAATTCG--AGAAAAAC--CTGACGA 1243
|||||.||.||| ||.|..|||||.| || .||||||| |||||.|
BL01120___yrv 1084 AGCGGGACAATC-GGAACGCGGGGGA---CGCTCGAAAAACGGCTGACCA 1129
BSNT_04002___ 1244 TCAAAACGGCAAAACTGCTCGCCAGC-AAACTTAGATCGGCTGGAGCGGA 1292
||||||||||||..||.||.||| || |||||.|||.|.|.|||.|...|
BL01120___yrv 1130 TCAAAACGGCAACGCTTCTTGCC-GCGAAACTGAGAGCCGATGGCGTCAA 1178
BSNT_04002___ 1293 TGTATATGTGACACGCCAGGATGATACCTTTGTCAGCCTGCAGTCACGGG 1342
.||.|||.||||.||..|.||.|||.|.||.||||||||.|||||.||||
BL01120___yrv 1179 CGTCTATATGACGCGGAATGACGATTCTTTCGTCAGCCTTCAGTCGCGGG 1228
BSNT_04002___ 1343 TCTCTACCTCTCACTACCGTAACGCTGACGCCTTTATCAGCATTCATTAT 1392
||.|.||||||||.|||||.|||||.|||||.||||||||||||||||||
BL01120___yrv 1229 TCGCGACCTCTCATTACCGAAACGCCGACGCTTTTATCAGCATTCATTAT 1278
BSNT_04002___ 1393 GACAGCT------ATGCGGATACCTCTACAAGAGGCAGTACAGCATATTA 1436
||.|||| ||||| |.|.|| ||.||.|.|||.||.|||||
BL01120___yrv 1279 GATAGCTTTCCAAATGCG--TCCGTC----AGGGGAAATACGGCCTATTA 1322
BSNT_04002___ 1437 CTACAGTCCTGCCAAAGATCAGGAA-CTCGCATCAGATGTCCACTCAGAA 1485
||||||.||..||||||| |.|||| ||||||.||||.||.||.||.||.
BL01120___yrv 1323 CTACAGCCCGTCCAAAGA-CCGGAAGCTCGCAGCAGACGTGCAGTCCGAG 1371
BSNT_04002___ 1486 GTGGTGAAGCGTTCTTCCATTCCAGACCGCGGCGTATTATTCGGAGATTA 1535
.|.|..|.||..||..|..|.|||..||||||||||.|||||||.||.||
BL01120___yrv 1372 ATCGAAAGGCACTCGCCTCTGCCAAGCCGCGGCGTACTATTCGGGGACTA 1421
BSNT_04002___ 1536 TTATGTGCTCCGGGAAAACAGACAGCCCGCTATGC--TGTACGAGCTGGG 1583
.|..||..|..|.|||||.|.||||||||| .|| |||..||.||.||
BL01120___yrv 1422 CTTCGTATTAAGAGAAAATAAACAGCCCGC--CGCATTGTTTGAACTCGG 1469
BSNT_04002___ 1584 ATATGTAAGCCATCCGCAGGAAGAAGCCATTGTACATAGC---AATTCAT 1630
.||..|.||||||||.||.|||||||| .|||...||| ||..|.|
BL01120___yrv 1470 CTACTTGAGCCATCCTCAAGAAGAAGC---GGTAGTCAGCACGAACGCTT 1516
BSNT_04002___ 1631 ACCAAGAAAAAGTAACAGATGGGATCGAAAGCGGATTAGAGAAATACTTC 1680
||..|||||.|||.|||||.||.|||..||||||..||||.||.||.||.
BL01120___yrv 1517 ACAGAGAAAGAGTGACAGACGGCATCAGAAGCGGTCTAGAAAACTATTTT 1566
BSNT_04002___ 1681 CAATAA 1686
.|.|||
BL01120___yrv 1567 GACTAA 1572
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