Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05872 and BL01118
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05872___epr.1.5803.seq
# -bsequence dna-align/BL01118___epr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05872___epr-BL01118___epr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05872___epr-BL01118___epr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05872___epr
# 2: BL01118___epr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2184
# Identity: 1244/2184 (57.0%)
# Similarity: 1244/2184 (57.0%)
# Gaps: 534/2184 (24.5%)
# Score: 3468.0
#
#
#=======================================
BSNT_05872___ 1 ATGAAAAACATGTCTTGCAAACTTGTTGTATCAGTCACTCTGTTTTTCAG 50
|||||||| ||..||.|||.|.|..||.||.|...|..||||..||.|
BL01118___epr 1 ATGAAAAA---GTTATGGAAAATCGCGGTTTCGGCTGCAATGTTCGTCGG 47
BSNT_05872___ 51 TTTTCTCAC-----CATAGGCCCTCTCGC--TCATGCGCAAAAC----AG 89
||||.||.| || ||| ||| |||.|||.|||.| ||
BL01118___epr 48 TTTTTTCGCAAATTCA----CCC---CGCATTCAAGCGGAAAGCAATAAG 90
BSNT_05872___ 90 CAGCGAGAAAGAGGTTATTGTGGTTTATAAAA--ACAAGGCCGGAAAGGA 137
||| ||.||.|||||.|||||.||.||||||| ||.|| ||||||.||
BL01118___epr 91 CAG-GAAAACGAGGTCATTGTTGTATATAAAAATACCAG--CGGAAAAGA 137
BSNT_05872___ 138 AACCATCCT-GGACAGTGATGCTGA---TGTTGAACAGCAGTATA----A 179
||||.||.| |.|||| ||.|| .||.||||| .||.|| .
BL01118___epr 138 AACCGTCATCGAACAG----GCAGACACGGTAGAACA--CGTTTACCGGC 181
BSNT_05872___ 180 ACATCTTCCCGCGGTAGCGGTCACAGCAGACCAGGAGACAGTAAAAGAA- 228
||| |||||||.|..||.|||||.||.|||.|..|.|||||....|||
BL01118___epr 182 ACA--TTCCCGCAGCCGCTGTCACTGCGGACGACAAAACAGTGCGCGAAC 229
BSNT_05872___ 229 TTAAAGCAGGATCCTGATATTTTGTATGTAGAAAACAACGTATCATTTAC 278
||.|| ||.|||||.||..|..|||||||.|||.|||||.|..|..|..|
BL01118___epr 230 TTGAA-CACGATCCCGACGTCCTGTATGTCGAAGACAACCTCCCGGTAGC 278
BSNT_05872___ 279 CGCAGCAGACAGCACGGATTTCAAAGTGCTGT---CAGACGGCACTG--- 322
.||.||.||||||||.|.|.|.||| |||.| ||| |.||||.|
BL01118___epr 279 TGCTGCCGACAGCACCGCTCTAAAA--GCTTTCTCCAG-CAGCACAGCGC 325
BSNT_05872___ 323 ---ACACCTCTGACAAC--TTTGAGCAATGGAACCTTGAGCCCATTCAGG 367
||.||||.| | |||.| ||.||||||.|..|||..|||||.|
BL01118___epr 326 AAAACGCCTCCG----CGTTTTCA-CAGTGGAACATCAAGCTGATTCAAG 370
BSNT_05872___ 368 TGAAACAGGCTTGGAAGGCAGGACTGACAGGAAAGAATATCAAAATTGCC 417
....||.|||||||||...|||..||||.|||||..|..|.||.||.||.
BL01118___epr 371 CCGCACTGGCTTGGAATAAAGGTTTGACCGGAAAACAGGTGAAGATCGCG 420
BSNT_05872___ 418 GTCATTGACAGCGGGATCTCCCCCCACGATGACCTGTCGATTGCCGGCGG 467
||.||||||||||||||.||||||||.||.||.||||||||.||||||||
BL01118___epr 421 GTTATTGACAGCGGGATTTCCCCCCATGAGGAGCTGTCGATCGCCGGCGG 470
BSNT_05872___ 468 GTATTCAGC---TGTCAGTTATACCTCTTCTTACAAAGATGATAACGGCC 514
|.||.| .|||.|.||||||.||||.|||...||.|||||.||||
BL01118___epr 471 ---TGCATCGATGGTCGGCTATACCGCTTCATACCGTGACGATAATGGCC 517
BSNT_05872___ 515 ACGGAACACATGTCGCAGGAATTATCGGAGCCAAGCATAACGGCTAC--G 562
|||||||.|||||.||.|||||.||||||||.||||||||||| || |
BL01118___epr 518 ACGGAACCCATGTTGCCGGAATCATCGGAGCGAAGCATAACGG--ACGGG 565
BSNT_05872___ 563 GAATTGACGGCATCGCACCGGAAGCACAAATATACGCGGTTAAAGCGCTT 612
|.||.|||||||||||.||.|..||.||..|.||.||.||.||||||||.
BL01118___epr 566 GGATCGACGGCATCGCGCCCGGCGCGCAGCTGTATGCCGTAAAAGCGCTG 615
BSNT_05872___ 613 GATCAGAACGGCTCGGGGGATCTTCAAAGTCTTCTCCAAGGAATTGACTG 662
||.|.|||.||..||||||||||..||.||.|..|.|||||.||.||.||
BL01118___epr 616 GACCGGAATGGTGCGGGGGATCTGAAAGGTATCTTACAAGGCATCGATTG 665
BSNT_05872___ 663 GTCGATC--GCAAACGGGATGGACATCGTCAATATGAGCCTTGGCACGAC 710
||||||| || ||||.||.||.|||.||||||||||||| ||.|
BL01118___epr 666 GTCGATCCAGC--ACGGAATCGATATCATCAATATGAGCCT-----CGTC 708
BSNT_05872___ 711 G--TCA---GACAGCAAAATCCTTCATGACGCCGTGAACAAAGCATATGA 755
| ||| |||||..||.|.||.||.||.||.||..|.||||||||..|
BL01118___epr 709 GTTTCAGGCGACAGTCAAGTTCTCCACGATGCAGTAGATAAAGCATACAA 758
BSNT_05872___ 756 ACAAGGTGTTCTGCTTGTTGCCGCAAGCGGTAACGACGGAAACGGCAAGC 805
||..||..|..|..|.||.|..||.|||||.||.|.|||||||||.||..
BL01118___epr 759 ACGGGGAATCATTTTAGTCGGAGCGAGCGGAAATGCCGGAAACGGAAAAT 808
BSNT_05872___ 806 CAGTGAATTATCCGGCGGCATACAGCAGTGTCGTTGCGGTTTCAGCAACA 855
|.||..||||.|||||.||.||||||||.|||.||||.||.||.|||||.
BL01118___epr 809 CCGTTTATTACCCGGCCGCCTACAGCAGCGTCATTGCCGTCTCGGCAACC 858
BSNT_05872___ 856 AACGAAAAGAATCAGCTTGCCTCCTTCT-CAACAACTGGAGATGAAGTTG 904
||.|||||.||||||.|.|||||.||.| |||||.|.|.|| .|..||.|
BL01118___epr 859 AATGAAAAAAATCAGATCGCCTCATTTTCCAACACCGGCAG-CGCCGTCG 907
BSNT_05872___ 905 AATTTTCAGCACCGGGGACAAACATCACAAGCACTTACTTAAACCAGTAT 954
|.|||||.||.||.||.|||...||.|..||.||.| ||| || .||
BL01118___epr 908 AGTTTTCCGCTCCCGGCACATCGATTATCAGTACAT-CTT---CC--GAT 951
BSNT_05872___ 955 ------TATGCAACGGGAAGCGGAACATCCCAAGCGACACCGCACGCCGC 998
|||||||..||||||||.||.||.||.||.||.|||||||.|.|
BL01118___epr 952 CGCGGCTATGCAATCGGAAGCGGCACTTCACAGGCAACGCCGCACGTCAC 1001
BSNT_05872___ 999 TGCCATGTTTGC-CTTGTTAAAACAGCGTG-ATCCTGCCGAGACAAACGT 1046
.|.||||||||| ||| ||.||||||| || |.||..|||...||||.|.
BL01118___epr 1002 CGGCATGTTTGCACTT-TTGAAACAGC-TGTACCCAACCGCTTCAAATGC 1049
BSNT_05872___ 1047 CCAGCTTCGCGAGGAAATGCGGAGAAATAT-----CGTTGATCTTGG--- 1088
..||||.|||.||.|||||| ||...||| ||.| ||||
BL01118___epr 1050 TGAGCTGCGCAAGAAAATGC--AGTTTTATACAAGCGAT----TTGGGCG 1093
BSNT_05872___ 1089 -TACCGCAGGCCGCGATCAGCAATTT----GGCTACGGCTTAATCCAATA 1133
|.|| |||||.|||| |||| ||||||||.|||||||..|.
BL01118___epr 1094 CTCCC---GGCCGTGATC----ATTTGTTCGGCTACGGATTAATCCGCTT 1136
BSNT_05872___ 1134 TAAAG------CACAGGCAACAGATTCAGCGTACGCGGCAG-CAGAGCAA 1176
.|||| |||||.||...||...||||.|....||.| |.|| |||
BL01118___epr 1137 CAAAGAGGTCACACAGCCATTGGAAAAAGCGCAAAAAGCCGTCGGA-CAA 1185
BSNT_05872___ 1177 GCGG---------TGAAAAAAGCGGAACAAACAAA-AGCACAAACCGATA 1216
|||| .||||||||||| |||..|||| .||||||
BL01118___epr 1186 GCGGAAAAGACAAAGAAAAAAGCGG-ACATTCAAACCGCACAA------- 1227
BSNT_05872___ 1217 TCAACAAAGCGCAAGAACTCGTCAGCCAGCTGCCGGGCTCCGACGC---C 1263
||||||...||| |.|||.||.| |.||||| .
BL01118___epr 1228 -----AAAGCGATCGAA---------CCGCTCCCTG---CAGACGCAGAT 1260
BSNT_05872___ 1264 AAAACTGCCCTGCAAAAAAGACTGGATAAAGTACAGTCATACAGAAATGT 1313
|||||.||..||.||||.||||| || |||| |||
BL01118___epr 1261 AAAACCGCTTTGAAAAAGAGACT----------CA---ATAC-----TGT 1292
BSNT_05872___ 1314 AAAAGATGCGAAAGACAAAGTCGCAAATGCAGAAAAATATAAAACACAGC 1363
.||||| ||| ||..|||||
BL01118___epr 1293 TAAAGA----------------GCA---GCTTAAAAA------------- 1310
BSNT_05872___ 1364 AAACCGTTGATACAGCACAAACCGCCATCAACAAGCTGCCAAACGGAACA 1413
||||
BL01118___epr 1311 ----------------------------------------------AACA 1314
BSNT_05872___ 1414 GACAAAAAGAACCTGCAAAAACGCTTAGACCAAGTAAAACGCTACATCGC 1463
|.|.||| ||| ||||.|||| ||||
BL01118___epr 1315 GCCGAAA-------GCA--------------AAGTGAAAC------TCGC 1337
BSNT_05872___ 1464 GTCA-AAGCAAGCGAAAGACAAAGTTGCGAAAGCGGAAAAAAGCAAAAAG 1512
|.| |||||| ||||||
BL01118___epr 1338 -TGAGAAGCAA---------------------------------AAAAAG 1353
BSNT_05872___ 1513 AAAACAGATGTGGACAGCGCACAATCAGC--------AATTGGCAAGCTG 1554
|||||..|||..|||..|||.|||..||| ||.|.|..|||.|
BL01118___epr 1354 AAAACCAATGCCGACTCCGCCCAAAAAGCGGTCAACGAACTCGACAGCGG 1403
BSNT_05872___ 1555 C-CTGCAAGTTCAGAAAAAACGTCCCTGCAGAAACGCCTTAACAAAG--- 1600
| || ||| ||||||....||||.|||||..|.|||...|
BL01118___epr 1404 CACT-----TTC----AAAACGAATTTGCAAAAACGGATCAACGCGGTCC 1444
BSNT_05872___ 1601 --TGAAGAGCACCAAT-TTGAAGACGGCACAGCAATCCGTATCTGC---G 1644
|.||| || | ||||||||.|||.||||..|||| ||| .
BL01118___epr 1445 GTTCAAG----CC--TCTTGAAGACCGCAAAGCAGGCCGT---TGCCAAA 1485
BSNT_05872___ 1645 GCTGAAAA----GAAATCAACTGATGCAAA--TGCGGCAAAAGCACAATC 1688
|||||||| | ||||.||..|||| | |||| |||||.|||..
BL01118___epr 1486 GCTGAAAAAGCGG----CAACAGACTCAAACCT-CGGC-AAAGCGCAAAA 1529
BSNT_05872___ 1689 AGCCGTCAATCAGCTTCAAGCAGGCAAGGACAAAACAGCAT-TGCAAAAA 1737
|||..|||||.||||||..||.||.||.||||||.|| .|| ||||||||
BL01118___epr 1530 AGCGATCAATGAGCTTCCCGCCGGAAAAGACAAATCA-AATCTGCAAAAA 1578
BSNT_05872___ 1738 CGGTTAGACAAAGTGAAGAA--AAAGGTGGCGGCGGCTGAAGC------A 1779
.||.|..|||..|.|||.|| || ||.||||.||| .
BL01118___epr 1579 AGGCTGAACACCGCGAAAAAGCAA--------GCAGCTGCAGCCTATAAT 1620
BSNT_05872___ 1780 AAAAAAG----TGGAAACTGCCAAGGCAAAAGTGAAGAAAGCGGAAAAAG 1825
||||||| || |.||.|||||.|||||.||.|..||.|||.||.
BL01118___epr 1621 AAAAAAGTTTCTG----CAGCAAAGGCCAAAGTCAAAACGGCCGAACAAA 1666
BSNT_05872___ 1826 ACAAAACAAAGAAATCAAAGGCATCCGCTCAGTCTGCAGTGAATCAA-TT 1874
|.|.|||.||.|||.||||..||.|.||.||.||.||||| |..||| .|
BL01118___epr 1667 AGAGAACGAAAAAAACAAAATCAGCAGCGCAATCAGCAGT-AGGCAAGCT 1715
BSNT_05872___ 1875 AAAAGCATCCAATGAAAAAACAAAGCTGCAAAAACGGCTGAACGCCGTCA 1924
.|||||||||...||||||||.|||||||||||||||.|.||.|||.|.|
BL01118___epr 1716 GAAAGCATCCGCCGAAAAAACGAAGCTGCAAAAACGGATCAATGCCATTA 1765
BSNT_05872___ 1925 AACCGAAAAGTAACCAAAAACCTTTAAGACTTGCATTCCAGGTCTTAAAG 1974
|.|.| |||||.
BL01118___epr 1766 AGCTG--AAGTAG------------------------------------- 1776
BSNT_05872___ 1975 GTTTTTTACATTCTAAGAACATCACACACAACCTTTTTCCCATCCATTGT 2024
BL01118___epr 1776 -------------------------------------------------- 1776
BSNT_05872___ 2025 ACAGGCTTTTCATACTATTGCTATACAGCCATGA 2058
BL01118___epr 1776 ---------------------------------- 1776
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