Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01776 and BL01117
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01776___yhjD.1.5803.seq
# -bsequence dna-align/BL01117___yhjD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01776___yhjD-BL01117___yhjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01776___yhjD-BL01117___yhjD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01776___yhjD
# 2: BL01117___yhjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity: 224/428 (52.3%)
# Similarity: 224/428 (52.3%)
# Gaps: 118/428 (27.6%)
# Score: 520.5
#
#
#=======================================
BSNT_01776___ 1 ---------AT----GCCAAATCTGCAGGAGGAAATATACGATTTAATTG 37
|| |||.||.| |||| |||.|.||||
BL01117___yhj 1 ATGACAAGAATTCCCGCCGAAGC--CAGG-----------GATATGATTG 37
BSNT_01776___ 38 AACGGGCTCTCTTTTTGCCCATGGCCATTACGATTTTTAACCGTGATCTC 87
||..|||..|.|...|.||.|||.||.|.|..||.||.|||||
BL01117___yhj 38 AAAAGGCGATTTACCTCCCGATGACCGTCAGCATATTAAACCG------- 80
BSNT_01776___ 88 GCCGGAATTGAAGAA------AGCA-----CATTAAAATTGAAGCATCCT 126
|||..|||| || |||| |.||.||..||||..|.||.
BL01117___yhj 81 ---GGACATGAA-AATCATCCAGCAGGGGCCGTTTAAGCTGAAAGACCCC 126
BSNT_01776___ 127 TATAAACAGCTTATCAGCGAATCA----TTAAAAATAGCACAAAAGGATT 172
||| |.||.|.|.|.|||| || |||||..|.||.||....||..
BL01117___yhj 127 TAT---CTGCATCTGATCGAA-CAGGCGTTAAAGCTTGCCCAGCGCGACC 172
BSNT_01776___ 173 TGATGGAGGTCAGAAAAGAACTG------AGGAAAAGAAA--------AA 208
||...||.||.|.|||.|||||| .||||||..|| ||
BL01117___yhj 173 TGTACGACGTAAAAAATGAACTGCGCCGCCGGAAAATCAAGGTGCATGAA 222
BSNT_01776___ 209 TTGCAATCCGCGAGACGGAACGCGATGAAGCCTTTACGCTCTATACATTT 258
.|| .||||.||| ||||||||||||.|.|||.|.|||
BL01117___yhj 223 GTG----TCGCGGGAC----------GAAGCCTTTACGATGTATTCCTTT 258
BSNT_01776___ 259 GTCAT-CGACGGTTATGAAGAAAACCATCGCTATTTTAATCCGCGAATCC 307
.| || .||.|||||.||||||.|.|||..|||.||||||||.||.||||
BL01117___yhj 259 AT-ATATGAGGGTTACGAAGAAGAGCATAACTACTTTAATCCCCGCATCC 307
BSNT_01776___ 308 GTGAGCAGG--TCAGCGAATTATT-AACATACTATCTATT------TGCC 348
|..|.|||| ||.||| .||.|| |.| |||||.|||| .||.
BL01117___yhj 308 GCAACCAGGTATCCGCG-CTTCTTGAGC--ACTATTTATTCAAAGCCGCT 354
BSNT_01776___ 349 CCGG----ACAGACTCCGAGCCTTTTGA 372
||.| |.||
BL01117___yhj 355 CCAGATCAATAG---------------- 366
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