Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01744 and BL01110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01744___yhfM.1.5803.seq
# -bsequence dna-align/BL01110___yhfM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01744___yhfM-BL01110___yhfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01744___yhfM-BL01110___yhfM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01744___yhfM
# 2: BL01110___yhfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 520
# Identity: 242/520 (46.5%)
# Similarity: 242/520 (46.5%)
# Gaps: 197/520 (37.9%)
# Score: 486.0
#
#
#=======================================
BSNT_01744___ 1 ATGAAAAAAATAGTGGCAGCCATCGTGGTAATCGGTCTTGTGTTTATC-G 49
.|||..||||..||| |||.|| |
BL01110___yhf 1 ------------------------ATGGGGATCGCACTT---TTTTTCGG 23
BSNT_01744___ 50 CATTT--------------TTTTATCT-TTACAGCCGATCAGGCGATGTG 84
||||| ||||||.| ||.||...||| ||||..|..
BL01110___yhf 24 CATTTTATCCATCACTGTCTTTTATGTATTCCACTTGAT--GGCGGAGCC 71
BSNT_01744___ 85 TATC-AATCGGTAGACGCGGATTTGATCACACTGTCTTCAAGCGGCCAGG 133
|.|| |.||...|.|.||.||....|||| ||||.||||.|.|.||
BL01110___yhf 72 TTTCGACTCAAGAAATGCAGAAGAAATCA-----TCTTGAAGCAGGCGGG 116
BSNT_01744___ 134 AAGATATCGAGATTGAAAAAA--GACAGCACGTCAAAGATA--------- 172
| ||.|.|||||||| |.||||| |||||||.|
BL01110___yhf 117 A-------GACAGTGAAAAAACGGTCAGCA--TCAAAGACAGGCACAACA 157
BSNT_01744___ 173 ---------TGCTGGATA---TTATGAATCAGGGAAAACAGGTGAAGACA 210
||||.|||| |||..|| ||||||||.| .||||||
BL01110___yhf 158 TAGCCGTCCTGCTTGATACATTTAATAA--AGGGAAAAGA-ATGAAGA-- 202
BSNT_01744___ 211 GAAAAAACA--TCAGCCCCTG-------------ATTACGAAGGGACA-A 244
||||.||| .||.|.|||| ||.|| |||.| |
BL01110___yhf 203 -AAAAGACAGCGCATCACCTGCCTTCTCCGGCGTATCAC----GGATACA 247
BSNT_01744___ 245 TCAAGTTTCATAAAGACCGGTATGAC-------TCA-TTCAGACTATGGA 286
||| .||| ||||||.| .|| ||| ||||...|.|||
BL01110___yhf 248 TCA----GCAT---GACCGGCA-CACATCGCGTTCACTTCACCGTCTGG- 288
BSNT_01744___ 287 TTGACGGCAGCCAGCAAGCCGTTTTTTCGA------AGGATGGCACATA- 329
.|||.|..|| |..|||||||..|...|| ||||.||||||||
BL01110___yhf 289 CTGAAGAAAG--ATGAAGCCGTCATCCTGAAAGAAGAGGAAGGCACATAT 336
BSNT_01744___ 330 ------CTACAAATTGAGCAAAAATGATACAAAG--GCGCTGCTA--AAT 369
||.||| |||| |..|.|||| ||.||.||| |..
BL01110___yhf 337 TTCGTTCTCCAA------CAAA---GGGAAAAAGACGCCCTCCTAGGAGA 377
BSNT_01744___ 370 ATTATTAAAAAAGAA----GCA--------------------AAGGATTG 395
|||...|||||.|.| ||| |||..|||
BL01110___yhf 378 ATTGCAAAAAAGGGACGCGGCAGGCGTCCCTTTTAGCGGGTCAAGATTTG 427
BSNT_01744___ 396 A------------------- 396
.
BL01110___yhf 428 TTTGTCAGAATGTCTTTTAA 447
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