Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01718 and BL01104
See
Amino acid alignment /
Visit
BSNT_01718 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_01718___yhaA.1.5803.seq
# -bsequence dna-align/BL01104___yhaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01718___yhaA-BL01104___yhaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01718___yhaA-BL01104___yhaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01718___yhaA
# 2: BL01104___yhaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity: 853/1311 (65.1%)
# Similarity: 853/1311 (65.1%)
# Gaps: 198/1311 (15.1%)
# Score: 2758.0
#
#
#=======================================
BSNT_01718___ 1 ----------------TTGTCCATATCCACACTGCAGA-AAGAGATAAAC 33
|||||| || || ||.||.
BL01104___yha 1 TTGAGCGCATCCGGATTTGTCC--------------GACAA---ATCAAT 33
BSNT_01718___ 34 AAACAGCTCGACAGCTG----TTTTGAAGAAATGGTTGAGATCAGGCGCC 79
||.|||||.|| || .|..||.||||||||..|..|.|||||||
BL01104___yha 34 AACCAGCTTGA----TGCCCACTACGATGAAATGGTCAAATTGAGGCGCC 79
BSNT_01718___ 80 ATATTCATATGTATCCTGAGCTCTCATTTCAAGAAGAAAAAACCGCCGCA 129
||.|||||..|.|.||.|||||.||.|||||||||.|.|||||.||||||
BL01104___yha 80 ATTTTCATCAGCACCCGGAGCTTTCTTTTCAAGAAAAGAAAACAGCCGCA 129
BSNT_01718___ 130 TTTATTGCTTCCTATTATGAGTCGTTAGGAGTCCCAATCCGCACGAACGT 179
|||||.||.||.||.|||||..||.|.||..|.||.||||||||.|||||
BL01104___yha 130 TTTATCGCCTCTTACTATGAAGCGCTCGGTATTCCTATCCGCACCAACGT 179
BSNT_01718___ 180 CGGCGGCAGAGGGGTTTTAGCATATATAGAAGGAAGCGAA---CCCGGCC 226
.|||||..|.||.|||.|.||.||.||.|||| |||.| |||||||
BL01104___yha 180 AGGCGGAGGCGGAGTTCTCGCCTACATCGAAG---GCGGATCTCCCGGCC 226
BSNT_01718___ 227 C--TACAGT-CGCTTTGAGGGCCGACTTTGACGCTCTCCCCATTCAAGAT 273
| | ||.| |||||.|| |||||.||||||||.||.||||||||.|||
BL01104___yha 227 CCGT-CATTGCGCTTCGA--GCCGATTTTGACGCGCTGCCCATTCATGAT 273
BSNT_01718___ 274 GAAAAAGATGTCCCTTACGCCTCCAAAGTGCCTGGTGTCATGCATGCATG 323
||||||||.|..||||||...||.|..|||||.||.|||||||||||.||
BL01104___yha 274 GAAAAAGACGCGCCTTACCGATCGACTGTGCCGGGAGTCATGCATGCCTG 323
BSNT_01718___ 324 CGGCCACGACGGCCACACCGCAGCTCTTCTCGCAGTGGCCAAGGTCCTTC 373
|||.||||||||.|||||.|||.|.||.||.|...|.||.||.||..|
BL01104___yha 324 CGGACACGACGGGCACACGGCAACCCTGCTTGTCCTCGCTAAAGTTTT-- 371
BSNT_01718___ 374 ACCAAAACAGACATGA--------ACTG-----AAGGGAACATTTGTGAT 410
|| |||| ||.| ||||.||.| |.||..|
BL01104___yha 372 ---------GA-ATGAGCACGCGGACCGTTTAAAAGGAAAGA-TCGTCTT 410
BSNT_01718___ 411 GATCCACCAGCATGCAGAAGAATATTATCCGGGAGGCGCAAAGCCAATGA 460
.||.||.||||||||.||.||.||||..|||||.||.||.|.|||.||||
BL01104___yha 411 CATTCATCAGCATGCCGAGGAGTATTCGCCGGGCGGAGCCAGGCCGATGA 460
BSNT_01718___ 461 TTGATGACGGCTGTCTCGAAAACGCG---GATGTGATATTCGGCACTCAT 507
||||.||||||||.||.| |||.| ||.|||||.|||||.||.|||
BL01104___yha 461 TTGAAGACGGCTGCCTTG---ACGGGGTTGACGTGATTTTCGGGACCCAT 507
BSNT_01718___ 508 CTTTGGGCAACTGAGCCGCTCGGAACCATTCTTTGCCGCCCCGGCGCCG- 556
.|.|||||.||.||||||...|||||..|||..|.|||..|.|| .|||
BL01104___yha 508 TTGTGGGCTACAGAGCCGACGGGAACAGTTCAATACCGGACAGG-ACCGA 556
BSNT_01718___ 557 TAATGGCGGCGGCGGACCGAT------TTACGATTAAAGTCTTCGGAAAG 600
|.|||||.||.||.|||||.| |||||||||||| |.||||
BL01104___yha 557 TCATGGCCGCTGCAGACCGTTTTACGATTACGATTAAAG-----GCAAAG 601
BSNT_01718___ 601 GGCGGCCACGGCGCTCATCCGCATGATACTAAAGACGCCGTCCTGATCGG 650
|| ||.||.|||||.||.||.|||.|.||.|||||||||||.||||||||
BL01104___yha 602 GG-GGGCATGGCGCACAGCCTCATAAAACAAAAGACGCCGTGCTGATCGG 650
BSNT_01718___ 651 TTCGCAAATCGTTACCTCTTTGCAGCACATTGTCAGCCGCAAAGTCAATC 700
.|||||.|||||.||.||..|.|||||.|||||||||||||...|..|||
BL01104___yha 651 ATCGCAGATCGTCACTTCCCTCCAGCAGATTGTCAGCCGCAGGCTTGATC 700
BSNT_01718___ 701 CGATTCAATCCGCCGTCATTTCGACAGGCTCCTTCATCGCCGACAA-TCC 749
|||.|||..|.||.||||||||||||||.||.||..|.|||||||| |||
BL01104___yha 701 CGACTCAGCCGGCTGTCATTTCGACAGGTTCATTTGTTGCCGACAACTCC 750
BSNT_01718___ 750 GTTTAATGTCATCGCAGACCAAGCAGTACTCATCGGCACAGCGCGTTCTT 799
||||||||.|||||.||..||||.||..|.|||||.||.||||||||.|
BL01104___yha 751 -TTTAATGTAATCGCTGATAAAGCCGTTTTAATCGGAACGGCGCGTTCCT 799
BSNT_01718___ 800 TTGATGAAAATGTCCGGGACATT-CTGGAGAAAGAAATTGAAGCGGTTGT 848
|..|||||.|..||| |.||.|| .|.||.||.|||||||||..|||||.
BL01104___yha 800 TCAATGAAGAAATCC-GCACCTTGATTGAAAACGAAATTGAACAGGTTGC 848
BSNT_01718___ 849 AAAAGGAATATGCAGCATGCACGGCGCGTCCTATGAGTACACCTATGAAC 898
||||||.||||||.|||||||.|||||...||..||.||..|||..|||.
BL01104___yha 849 AAAAGGTATATGCGGCATGCATGGCGCTGACTGCGACTATTCCTTCGAAA 898
BSNT_01718___ 899 AGGGTTATCCGGCGGT-TGTGAACCATCCTGCCGAAACGAGCCACTTGGT 947
.|||.||||||.|.|| || .|||||.||.|..|||||| .|||
BL01104___yha 899 GGGGCTATCCGCCTGTCTG-CAACCACCCGGAAGAAACG----TCTT--- 940
BSNT_01718___ 948 GAGCAC-CGCAAAGAAT----------ACCGAGGGCGTTCAGCAGGTCAT 986
..| |||||| ||| ||.||.||||||.|..|.| |
BL01104___yha 941 ---TTCTCGCAAA-AATCGCCAAACAGACGGAAGGCGTTGAAAAAG---T 983
BSNT_01718___ 987 TGACGGTGAACC-----GCAAATGGGCGGCGAGGATTTTTCTTATTACTT 1031
|||.| .||.| ||||||||||||.||.|||||..||||.|||||
BL01104___yha 984 TGAAG--AAAGCGGCATGCAAATGGGCGGGGAAGATTTCGCTTACTACTT 1031
BSNT_01718___ 1032 ACAAAACGTGAAAGGCACTTTTTTCTTTACAGGTGCCGCTCCCGAACAGC 1081
.||..||||.|||||.||.||||||||.|||||.|||..|||.|||.|.|
BL01104___yha 1032 GCAGCACGTCAAAGGGACATTTTTCTTCACAGGCGCCCGTCCTGAAGATC 1081
BSNT_01718___ 1082 CAGA-TCGAGTTTATTCCCACCACCATCCGAAATTTGATATCAACGAAAA 1130
|.|| .|| ||.|.|.||||.|||||||||||.|||||||||.|.|||||
BL01104___yha 1082 CGGAGGCG-GTGTTTCCCCATCACCATCCGAAGTTTGATATCGATGAAAA 1130
BSNT_01718___ 1131 AGCCATGCTGACAGCGGCCAAGGTCCTTGCCGGC----GCTGCGATCACC 1176
|||.|||||||..||.|||||.| |||.||| ||.|||.||.||
BL01104___yha 1131 AGCGATGCTGATCGCAGCCAAAG----TGCTGGCAAATGCCGCGGTCTCC 1176
BSNT_01718___ 1177 TATCATCAGCTATAA----------------------------------- 1191
|||||..|| ||
BL01104___yha 1177 TATCAGGAG----AAAGAGCAGGCGGTCCGCGAAACGCCTGCAATGGAAC 1222
BSNT_01718___ 1191 ----------- 1191
BL01104___yha 1223 AACCGAAATAG 1233
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.