Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04796 and BL01094
See
Amino acid alignment /
Visit
BSNT_04796 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04796___pucH.1.5803.seq
# -bsequence dna-align/BL01094___pucH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04796___pucH-BL01094___pucH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04796___pucH-BL01094___pucH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04796___pucH
# 2: BL01094___pucH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1603
# Identity: 801/1603 (50.0%)
# Similarity: 801/1603 (50.0%)
# Gaps: 500/1603 (31.2%)
# Score: 1562.0
#
#
#=======================================
BSNT_04796___ 1 -------------------------ATGGCTTACG----------ATATG 15
||||.||| | |.|||
BL01094___puc 1 ATGAATTTTGATTCAATTATCAAAAATGGATTA-GTCATTCTAGAAAATG 49
BSNT_04796___ 16 GTGATAAAAG--GTGCGAAGGCAGTTACG----CCAGATGGCGTTATAGA 59
|||| |.||| || ||||| ||.| ..|||||||...||.|.
BL01094___puc 50 GTGA-ACAAGAAGT-CGAAG-----TAGGGATCAAAGATGGCAAAATCGC 92
BSNT_04796___ 60 AGCTGAGATTGCAGTTCAAAACGGTGTCA----TTGCCGAGATAGGTTCT 105
||| ||.|| |||| ||| |||.|
BL01094___puc 93 AGC---------------AATCG--GTCAGGATTTG--------GGTAC- 116
BSNT_04796___ 106 GACATTGAA--GCAAGCGGGACGGAAATCATCCAGGCAGACGGGAAATA- 152
|| |||| ||||.|||.|.||| |..|||..||
BL01094___puc 117 -------AAGTGCAA---------AAATTATCGATGCA-AAAGGATCTAT 149
BSNT_04796___ 153 CGTGTTTCCTGGTGTGATAGACTGC-CATGTTCATTTTAATGAACCGGGC 201
.||.|.|||.|||.||||.|| ||| |||||.|||.|.|..||.||||||
BL01094___puc 150 TGTATCTCCAGGTATGATTGA-TGCACATGTGCATATCACAGAGCCGGGC 198
BSNT_04796___ 202 AGG----------GAGGATTGGGAGGGGTTTGAAACAGGTTCTCAAATGA 241
|| ||.||.||||||||.|.|||.||||| |..|
BL01094___puc 199 -GGCGGCTATCGTGATGAATGGGAGGGCTATGACACAGG-------AACA 240
BSNT_04796___ 242 TG-GCCGC------AGGCGGTTGCACCACCTATTTTGATATGCCGCTCAA 284
.| ||||| |||||||...||.||.|.|.||||.|||||
BL01094___puc 241 CGTGCCGCTGCAAAAGGCGGTGTAACGACGTTTATTGAAATGCC------ 284
BSNT_04796___ 285 CTGTATTCCATCAACCGTG------ACGGCAGA----GCATC--TTCTCG 322
|||..||||| ||| ||||.||| |.||| |||..|
BL01094___puc 285 ----ATTAAATCAA--GTGCCAGCAACGGTAGATGAGGAATCTATTCAAG 328
BSNT_04796___ 323 CAAAAGCTGAGCTAGGCAGACA---AAAATCTGCCGTGGATTTTGCGCTA 369
.||||..|.| ||.|.||.| |||||...|.||.||..|||||...
BL01094___puc 329 AAAAATTTAA---AGCCGGAAAAGGAAAATTATCAGTAGACGTTGCGAGT 375
BSNT_04796___ 370 TGGGGCGGCCTTGTGCCAGGCCATATCGAGGACATCCGTCCGATGGCTGA 419
|..|||||..|.|| .||||.| ||| |..|||||
BL01094___puc 376 TACGGCGGTTTAGT-----ACCATTT----GAC-----TTAGATGG---- 407
BSNT_04796___ 420 AGCGGG----------------AGCGATCGGGTT--------TAAAGCGT 445
||| |||.||.|.||| ||||...|
BL01094___puc 408 ---GGGTATTCAAGAATTAGATAGCAATGGTGTTGTTGCATATAAATGTT 454
BSNT_04796___ 446 TTTTATCAAAGTCAGGCACTGATGAGTTCCGCTCT-----------GTTG 484
|||||.|||..|..||| || |||.||| .||.
BL01094___puc 455 TTTTAGCAACATGTGGC------GA---CCGTTCTATAGAAGGAGATTTC 495
BSNT_04796___ 485 ATGAACGGACATTGCT----------CAAAGGCATGGCAGAAATCGCGGC 524
|||||||.|.||..|| |.||||||||..|.||||.|||..
BL01094___puc 496 ATGAACGTAGATGACTATTCCCTCTACGAAGGCATGAAACAAATTGCGAA 545
BSNT_04796___ 525 TGCAGGAAAAATCCTCGCTCTCCACGCGGAAAGCGATGCGATCACAAGCT 574
..||||.|||||..|..||.|.|||||.|||| |||| |.|||
BL01094___puc 546 GACAGGCAAAATATTATCTATACACGCTGAAA---ATGC---CGCAA--- 586
BSNT_04796___ 575 ACTTGCAGAT-GGTTTTGGCCAATA------AAGGAAAGGTGGA------ 611
||.|.||| .|||..||..|||| || |||.|.|||
BL01094___puc 587 --TTACCGATAAGTTAGGGGAAATAGCATCTAA--AAATGGGGAAACTTC 632
BSNT_04796___ 612 --CGCGGATGCGTACGCCGCCTCCCG-CCCGGAGGAAGCAGAAGTTGAAG 658
.||| |||.||.|..|..||.|| ||||.|...| |.|||||.|||.
BL01094___puc 633 ATTGCG--TGCTTATGTAGATTCTCGACCCGTATTTA-CTGAAGTAGAAC 679
BSNT_04796___ 659 CGGTGTATCGCACG-------ATTCAGTATGCGAAGGTGACAGGCTGTCC 701
||.| || | ||||..|.||||||.|..||.||.||||.
BL01094___puc 680 CGAT-TA------GAAAAATTATTCTATTTGCGAAAGAAACGGGATGTCG 722
BSNT_04796___ 702 GGTTCATTTTGTCCATATCAGC--------ACGG------CGAAAGCGGT 737
.||.||..|.||.||||| ||| |.|| |||||
BL01094___puc 723 TGTACACATCGTTCATAT-AGCTTGTGAAGAGGGCGTAGACGAAA----- 766
BSNT_04796___ 738 CCGGCTGATCAGAGAGGCGAAACAGGAAGGTCTTGATGTTTCGGTCGAGA 787
|..||| |.||..||||||||||..|.|||.||.|...|||.|
BL01094___puc 767 -----TTGTCA---AAGCACAACAGGAAGGGGTCGATATTACATGCGAAA 808
BSNT_04796___ 788 CATGCCCGCATTATGTCTTGTTCAGCCATGACGATTTACGGCAAAGGGGC 837
||||..|.||.|||.|.|..|||....|.||.||..||...||.|..||.
BL01094___puc 809 CATGTACACACTATTTATATTTCTATAAAGAAGAACTAGATCATATCGGA 858
BSNT_04796___ 838 TCTGTCGCAAAATGCGCGCCTCCGCTCCGGTCGCT--GCAATCAAAAGAG 885
.|.||.|.|||||||.|.||.||..|||| | ||||||
BL01094___puc 859 CCGGTTGTAAAATGCTCTCCGCCAATCCG-----TGAGCAATC------- 896
BSNT_04796___ 886 ACGCTGA---------TCGAAACGCTCATT-GCCGGGGACATTGACA-TG 924
|||||.| |.|||.||...||| ..|||.||.||| .|| |.
BL01094___puc 897 ACGCTTAGAAGGCATGTGGAATCGGGTATTAAACGGAGATATT-TCATTC 945
BSNT_04796___ 925 GTTTCCTCAGACCATTCCCCCTG--CCGTCCATCCTTGAAGCGGGA---- 968
||..|.|||||||||||.||.|| || ||...|||.|| |
BL01094___puc 946 GTAACATCAGACCATTCACCATGTACC--CCGGACTTAAA-----AGCTA 988
BSNT_04796___ 969 -GGATAACATG--TTTTTATCATGGGGCGGAATCAGCGGCGGGCA-GTTC 1014
||||| ||| |||..|.|.|||||.||.||| ||| |||.
BL01094___puc 989 CGGATA--ATGCATTTGAAGCTTGGGGAGGTATC--------GCAGGTTT 1028
BSNT_04796___ 1015 AC----------------TTTATTAGGAATGCTGGAACTGGCGCTTGAGC 1048
|| .|||||.| |||..|| ||.||
BL01094___puc 1029 ACAAAATAATGTCGATGTATTATTTG--ATGAAGG----------TGTGC 1066
BSNT_04796___ 1049 A------TCAGATTCCGTTTGAAACCATCGCAGAATGGACAGC------G 1086
| |.|.||.||.|| |.||| |||...|||| .
BL01094___puc 1067 AAAAACGTAATATGCCATT---ATCCA------AATTTGCAGCCATTATT 1107
BSNT_04796___ 1087 GCGGC---CCCTGCAAAACGAT------TCGGCCTTCAGAAAAAAGGGCG 1127
||..| ||||||.|||||.| ||| |.|| ||||||..|
BL01094___puc 1108 GCTACAAACCCTGCGAAACGTTTTAATCTCG--CATC----AAAAGGCAG 1151
BSNT_04796___ 1128 GCTTGAGGCGGGGTGTGATGCAGATTTCGTGCTCGTCA--------GCAT 1169
..|||..|..|||...|||||.||||||||..|..|.| |||
BL01094___puc 1152 TATTGCAGTAGGGAAAGATGCGGATTTCGTATTTATTAAGAAAGATGCA- 1200
BSNT_04796___ 1170 GGAGCCGTACACTG--TTACAAGAGAATCGATG-----TTTGCAAAGCAT 1212
||.|| || ||| ||| |.|| || |||||
BL01094___puc 1201 ----CCTTA---TGAATTA-AAG------GCTGAGGACTT-----AGCAT 1231
BSNT_04796___ 1213 A-----AAAAAAGCATTTACGAAGGACATACATTTCCCTGCAGCATTTG- 1256
| |.|||| || ||..|.||.|||..|| |||..|||.|
BL01094___puc 1232 ATCGACACAAAA----TT----AGTCCGTATATTGGCC-GCAAAATTGGT 1272
BSNT_04796___ 1257 GACCACTTACAGCAAAGGCCGATGC------GTGT-----ACAATGATGG 1295
|..||..||..|.||| |.||.| |||| .|.|||||..
BL01094___puc 1273 GCTCAGGTAGTGAAAA---CAATCCTTCGCGGTGTCGAAATCTATGATAA 1319
BSNT_04796___ 1296 GGAAAAGG-----TC-ACTGAAATTG-ACGGAGCTCTGGTCGTTCCTTCG 1338
.|||||.| || |.|||||..| |.|.||.| |..|||||
BL01094___puc 1320 AGAAAAAGGAATTTCAAATGAAAAAGTAGGAAGAT----TTATTCCT--- 1362
BSNT_04796___ 1339 TAA 1341
|||
BL01094___puc 1363 TAA 1365
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.