Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01755 and BL01086
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01755.1.5803.seq
# -bsequence dna-align/BL01086___yhfQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01755-BL01086___yhfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01755-BL01086___yhfQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01755
# 2: BL01086___yhfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity: 601/1029 (58.4%)
# Similarity: 601/1029 (58.4%)
# Gaps: 240/1029 (23.3%)
# Score: 1826.0
#
#
#=======================================
BSNT_01755 0 -------------------------------------------------- 0
BL01086___yhf 1 ATGAAGCACAAATATTTTGCTATTTTATTTTTATTGATGATATCAGTGAT 50
BSNT_01755 0 -------------------------------------------------- 0
BL01086___yhf 51 GACGGCCTGCTCTGGAGGAAGCGAGAGCACGAAAACTTCCGGTCAGGATT 100
BSNT_01755 1 --GTGCC---TGAGCAT------------CCGAA---GCGG--------- 21
|||.| |.||||| .|||| ||||
BL01086___yhf 101 CCGTGACAGTTAAGCATGATCTTGGAGAAACGAAAGTGCGGAATAAACCG 150
BSNT_01755 22 ------GTTGTTGTTCTTGAGCTTGGTTTTATTGATACACTGCTTGATCT 65
|||||.||||||||..|.||.|||||||||.|.||.||||||..
BL01086___yhf 151 AAAAAAGTTGTGGTTCTTGAATTGGGATTTATTGATGCGCTCCTTGATGC 200
BSNT_01755 66 CGGCATTACGCCTGTCGGGGTTGCCGATGACAACAAAGCGAAGCAGCTGA 115
.||.||||.|||||||||..||||.||.|||..||||.|.| ||.|.|
BL01086___yhf 201 GGGTATTAAGCCTGTCGGAATTGCGGACGACGGCAAACCTA---AGTTTA 247
BSNT_01755 116 TCAACAAGGATGT--GCTGAAGAAAATTGACGGCTACACATCTGTCGGCA 163
|.|||.||.|.|| |..|| |||||..|.||.||.||.||.|||||..
BL01086___yhf 248 TTAACGAGAAGGTCAGGGGA--AAAATCAAAGGGTATACTTCAGTCGGTT 295
BSNT_01755 164 CTCGCTCACAGCCAAGCATGCAAAAGATTGCTTCATTAAAACCCGATTTA 213
|.|||.|.|||||||||.|..||||.||||||||.|||||.|||||||||
BL01086___yhf 296 CGCGCGCCCAGCCAAGCTTTGAAAAAATTGCTTCTTTAAAGCCCGATTTA 345
BSNT_01755 214 ATTATTGCTGACACGACCCGGCATAAGAAG-GTGTACGATCAGCTGAAAA 262
||||||||.||..|||.|.|||| .||..| ||.||.|||.|||||...|
BL01086___yhf 346 ATTATTGCCGATTCGAGCAGGCA-CAGCGGCGTCTATGATAAGCTGTCGA 394
BSNT_01755 263 AAATAGCGCCGACGATTGCGCTTAATAATTTAAATGCTGATTATCAGGAT 312
||||.||||||||.||.|||||.||.||.||.|||||.|||||||||||.
BL01086___yhf 395 AAATTGCGCCGACAATCGCGCTCAAAAACTTGAATGCCGATTATCAGGAC 444
BSNT_01755 313 ACAATTGACGCTTCGCTTACGATTGCAAAAGCAGTCGGCAAGGAGAAG-G 361
||..||||.||.||.|||||||||||.|||||.||||||||.|| ||| |
BL01086___yhf 445 ACGCTTGATGCATCTCTTACGATTGCGAAAGCCGTCGGCAAAGA-AAGCG 493
BSNT_01755 362 AAATGGAGAAAAA----GCTGATGGCGCATGAAGAAAAGCT-------TA 400
.|||||||||||| ||||| .|||.||.||||||| |.
BL01086___yhf 494 CAATGGAGAAAAAATTGGCTGA----ACATAAACAAAAGCTGGATGAATT 539
BSNT_01755 401 GCGAGACAAAGCAGAAAAT---CAGCGCG--AACAGCCAGTCCGTGCTTT 445
| ||.||||||.| |||| || ||||| || |.|.|||.
BL01086___yhf 540 G-------AAACAGAAATTCGGCAGC-CGGAAACAG--AG--CATTCTTC 577
BSNT_01755 446 TGATCGGAAATACAAATGATACGATTA---TG-GCCAGGGATGAAAACTT 491
||.||||.||.||||||||....||.| || || |||||||||||
BL01086___yhf 578 TGCTCGGGAACACAAATGAAGAAATCACCGTGCGC----GATGAAAACTT 623
BSNT_01755 492 CTTTACATC-GAGACTTTTAACACAGGTCGGCTATCGATATGCAATC--A 538
.||.||.|| .|| |||.|.||..|..||||||||..|||.|...|| |
BL01086___yhf 624 TTTCACGTCTCAG-CTTCTGACGAAAATCGGCTATACATACGGTGTCGGA 672
BSNT_01755 539 GTACATCAGGCAATAGCGATTC--AAGCAATGGCGGCGACTCTGTGAATA 586
| |||.| |||||..|||||.| || || |||.||.||.||.||||
BL01086___yhf 673 G-ACAGC-GGCAAAGGCGATGCCGAA--AA---CGGTGAATCCGTCAATA 715
BSNT_01755 587 TGAAAATGACACTGGAGCAGCTGC-TGAAAACAGATCCGGATGTGATCAT 635
|.||||||||.||.||.||||||| |||.|| ||||||.||.||.||..|
BL01086___yhf 716 TTAAAATGACGCTCGAACAGCTGCTTGAGAA-AGATCCCGACGTTATTGT 764
BSNT_01755 636 CCTGATGACAGGAAAAACAGATGACCTCGACGCCGACGTTAAACGCCCGA 685
|||||||||.|||.|||.||||.|..||||.|..||||..|||.|.||||
BL01086___yhf 765 CCTGATGACGGGAGAAAAAGATAAAGTCGATGAAGACGGGAAAAGACCGA 814
BSNT_01755 686 TCGAAAAGAATGTCCTTTGGAAAAAGCTGAAGGCAGTGAAAAACGGGCAT 735
|||||||..||...||||||||||||||.|..|||||.||||||||..|.
BL01086___yhf 815 TCGAAAAAGATCCTCTTTGGAAAAAGCTCAGCGCAGTCAAAAACGGCAAG 864
BSNT_01755 736 GTATACCACGTGGACCG-TGCGGTATGGTCTTTGCGCCGCAGTGTAGACG 784
||.||..|.|..|||.| |.| |..|||||..|.||.|||||..|.||||
BL01086___yhf 865 GTTTATGAAGCCGACAGATTC-GCCTGGTCGCTCCGACGCAGCATTGACG 913
BSNT_01755 785 GGGCGAATGCCATTTTGGACG------------AGCTTC----------- 811
|.||..|||...|..||||.| |.||||
BL01086___yhf 914 GAGCAGATGAGCTGATGGATGAAATCGATCAGCATCTTCTGTCTGAGGAT 963
BSNT_01755 812 AAAAAGAGATGCCGGCTGCTAAGAAATAA 840
.||||||.|| ||.||
BL01086___yhf 964 CAAAAGAAAT--------CTTAG------ 978
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