Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00890 and BL01085
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00890.1.5803.seq
# -bsequence dna-align/BL01085___ydeD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00890-BL01085___ydeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00890-BL01085___ydeD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00890
# 2: BL01085___ydeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1032
# Identity: 309/1032 (29.9%)
# Similarity: 309/1032 (29.9%)
# Gaps: 612/1032 (59.3%)
# Score: 576.5
#
#
#=======================================
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 1 ATGAAATCAGCTCATGTGAAAGGCGTATTGATGGTGCTGGCAGGGGCTTC 50
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 51 GTTGTGGGGATTATCGGGGAGCGCTGCACAGTTTGTATTTGAAAGGGGAG 100
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 101 CGGCTGATGCCGGCTCGCTTGTCTCCGTCAGGCTTCTGGCGTCGGGCGTC 150
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 151 ATTCTCTTGCTATATGTTTCAATGAAAAACGGATTTCAACATGTGTGTCA 200
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 201 GATATGGAAGAAAAAAACAGATATTTGTTCGATTTTGGTATTTTCCATTT 250
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 251 TTGGAATGCTGGCCGTCCAATATACATTTTTTGCCTCAATCGAAAAGGGA 300
BSNT_00890 0 -------------------------------------------------- 0
BL01085___yde 301 AATGCCGCTGCTGCTGCAATTCTTCAATATTTGGCGCCTTTTTTCGTATT 350
BSNT_00890 1 -----------TTGTTAACAAA---------------------------- 11
.||||||.|||
BL01085___yde 351 GTTTTACCTATATGTTAAAAAAGAACTTCCGCCTAAGTGGAAAGATGCCG 400
BSNT_00890 12 ------------TGG----TTC---AATATCTCAACTTT----------- 31
||| ||| ..|.|.||..||||
BL01085___yde 401 TGCTTACTTTATTGGCGCTTTCCGGCGTGTTTCTTCTTTTGACAGGCGGA 450
BSNT_00890 32 --------CAG--------TGCCGGCAGCTGCAGTAGTATGGGGAGTTTT 65
||| |.|||||.|..||.|..||.|||||.|||||
BL01085___yde 451 AGACCGGACAGTTTGTATATTCCGGCCGAGGCCGCCGTTTGGGGCGTTTT 500
BSNT_00890 66 ATCAGGATTCGCGGCAGCTTTTTATACTTTATATGCCGTTGGTTT-ATTA 114
.||.||....|||...|||||.|||||..|.|.|||.|..||||| |||.
BL01085___yde 501 GTCCGGTGGTGCGCTTGCTTTCTATACGGTTTTTGCAGGAGGTTTAATTC 550
BSNT_00890 115 AATAAATTTGATTCTCTTGTCGTTGTA--GGTTGGGCTATGATTATTGG- 161
||| ..||.|.|.| ||||.||.| || ||.||||..|||.|..|.||
BL01085___yde 551 AAT-CGTTCGGTGC-CTTGACGGT-TACGGGATGGGGAATGCTCGTCGGA 597
BSNT_00890 162 -----CGGTTTTGCATT-----------------GGGTTTTATCCATCCG 189
|||||||.|.|| || ||||.||.|.||
BL01085___yde 598 GGGGCCGGTTTTTCTTTTTTGTTTCCGCCGTTTCGG--TTTAACCTTTCG 645
BSNT_00890 190 C-CAT---GGCAACTGGATTTTCAACGATTAACTGCTGAGGCGTATGCAT 235
| ||| |||| ||| |||||| |||.
BL01085___yde 646 CACATTGGGGCA---GGA-------------------GAGGCG---GCAG 670
BSNT_00890 236 ATATTTTATTTGTGATATTATTTGGAACAATGATT--GCGTTCTGGTTCT 283
..|||.|.|||||..||||.|..||.||| |.|| ||||| |
BL01085___yde 671 CCATTCTGTTTGTTGTATTGTGCGGCACA--GCTTTGGCGTT-------T 711
BSNT_00890 284 TCA-TAAAAAGCTTGGAAAGC--------CTTTCTCCCAAAGAAACAAGC 324
.|| ||.|.| ||||.|..| |||||..|.||||||||.|||
BL01085___yde 712 GCACTATACA--TTGGCAGTCTCTCTTATCTTTCCGCAAAAGAAACGAGC 759
BSNT_00890 325 -CTATTAG----GCAGTTTAGAACCTCTATCCGCTGTTGTAACAACTGTC 369
.|.|.|| || .|||||.||..|.||.||| |||||
BL01085___yde 760 TGTCTGAGCTGCGC-----CGAACCGCTTGCGGCCGTT-------CTGTC 797
BSNT_00890 370 GT------------TTGGTTAAAAGCGCCATTTGGTTCTTTTCAATGGA- 406
|| |.||| |.|||.||...|.|.|||||| |||
BL01085___yde 798 GTCGGCGCTCTGGCTGGGT-----GTGCCCTTCAATGCCTTTCAA-GGAG 841
BSNT_00890 407 -----------TTGGTGCTATTTGTATTATAGGAATAA--CTTTAATATT 443
.|||||.| .||||..|..||.| ||||
BL01085___yde 842 CCGGTACGGTGATGGTGAT-----CATTACGGTCATCATCCTTT------ 880
BSNT_00890 444 GGCTTTAAATAAAGAGCCTTCTGTGCAGAG--TGAAAAGTCGATATTAAA 491
|| ||..|||||| .||||||..| .|
BL01085___yde 881 ----------------CC--CTCAGCAGAGAAAGAAAAGCAG------CA 906
BSNT_00890 492 GATTAGGAATC-ATGCAAATCGGGATATATAG 522
||||..| || |||.|| ||| |.|||
BL01085___yde 907 GATTCTG--TCAATGAAA---GGG---TGTAG 930
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