Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01724 and BL01071
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01724___pbpF.1.5803.seq
# -bsequence dna-align/BL01071___pbpF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01724___pbpF-BL01071___pbpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01724___pbpF-BL01071___pbpF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01724___pbpF
# 2: BL01071___pbpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2233
# Identity: 1544/2233 (69.1%)
# Similarity: 1544/2233 (69.1%)
# Gaps: 182/2233 ( 8.2%)
# Score: 5198.5
#
#
#=======================================
BSNT_01724___ 1 ATGTTTAAGATAAAGAAAAAGAAACTTTTTATACCTATCATTATTTTAGT 50
|.||.|||||.|.||||.||.||.|||||.|||..||.
BL01071___pbp 1 ------------ATGAGAAAGAGATTTTTCATTCCAATCATCATTACAGC 38
BSNT_01724___ 51 G----TTAACTGCTTTTCTCGCTTTAATAGGATATATTTCAATTATTTTT 96
| | |.|.|||||.||| |||||.|||||||||.|.|||.|.||.
BL01071___pbp 39 GGCGAT--ATTCCTTTTATCG--TTAATCGGATATATTACGATTTTGTTC 84
BSNT_01724___ 97 CTCGGCCATTATGTCATAGATGAAAAAAAGCTTATTCTTCATGCTTCTTC 146
||.||..|||||||.||.||||||||.||.||.|||.|.|||||||||||
BL01071___pbp 85 CTGGGGGATTATGTGATTGATGAAAAGAAACTGATTTTCCATGCTTCTTC 134
BSNT_01724___ 147 AAAAATTGTTGATCAAAACGGAGATGAGGTTGCAAGCCTGTATACAGAAA 196
.|||||.||.||.||.||.|||||.||.||.||||||||.|||||.||||
BL01071___pbp 135 TAAAATCGTCGACCATAATGGAGAAGAAGTCGCAAGCCTCTATACCGAAA 184
BSNT_01724___ 197 ATCGCGAGCCGGTCTCGATCAAT----GAGATTCCAAAGCAGGTCAGAGA 242
| .||..||.||...||||| |||.|.||..|..|.||.|.|.|
BL01071___pbp 185 A----CAGAAGGCCTGTTTCAATTGCCGAGGTGCCGGACAATGTAAAAAA 230
BSNT_01724___ 243 AGCGTTTATCGCTGTTGAGGATAAAAGGTTCTATGAGCATCACGGCATTG 292
.||.||||||||.|||||.||.||..|.||.||||||||.||||||||.|
BL01071___pbp 231 TGCCTTTATCGCGGTTGAAGACAAGCGCTTTTATGAGCACCACGGCATCG 280
BSNT_01724___ 293 ATGCAAAATCTGTCGGAAGGGCAGTGTATCGCGATATATTAGCAGGCGGA 342
||...|||||.||..|..|.||.||.|||...||||||||||||||.|||
BL01071___pbp 281 ATTTTAAATCGGTTAGCCGTGCGGTCTATAAAGATATATTAGCAGGAGGA 330
BSNT_01724___ 343 AAGGTGGAAGGCGGAAGCACGATCACCCAGCAGCTTGCCAAAAATATTTT 392
||.||||||||.|||||||||||||||||||||||.||.|||||.|.|||
BL01071___pbp 331 AAAGTGGAAGGGGGAAGCACGATCACCCAGCAGCTCGCAAAAAACACTTT 380
BSNT_01724___ 393 TCTGACACATGACAAAACGTTTCTAAGAAAAACAAAAGAAGTGATCATTG 442
|.|||||.||||||||||||||.||||||||||.||||||||.||.||.|
BL01071___pbp 381 TTTGACAAATGACAAAACGTTTTTAAGAAAAACGAAAGAAGTCATTATCG 430
BSNT_01724___ 443 CGATCAATCTTGAACGGGATTACAGCAAGGACAAGCTGCTTGAAATGTAT 492
|.||||||.|.||.||||||||||||||.||||||||..|.|||||||||
BL01071___pbp 431 CTATCAATTTGGAGCGGGATTACAGCAAAGACAAGCTTTTGGAAATGTAT 480
BSNT_01724___ 493 TTAAATCAGCTTTACTTCGGACATGGGGTTTACGGCATACAAGCGGCGTC 542
||.||.|||||.||.|||||.||.||.||.||.||.||.||.||||||.|
BL01071___pbp 481 TTGAACCAGCTATATTTCGGGCACGGCGTCTATGGAATCCAGGCGGCGGC 530
BSNT_01724___ 543 CCACTATTATTTTAATAAAGAAGTAAAAGATTTGACTGTATCTGAAGGCG 592
..||||.|.||||||.|||||.||.|||||.|||||.||...|||.||.|
BL01071___pbp 531 AAACTACTTTTTTAACAAAGATGTGAAAGACTTGACGGTCAGTGAGGGAG 580
BSNT_01724___ 593 CTGTTTTGGCCGCTATTCCGAAGGCGCCTTCTACGTACTCTCCAATTTTG 642
|.||..||||..|.|||||.||.||||||||.|||||.||.||.|||.|.
BL01071___pbp 581 CGGTGCTGGCTTCCATTCCTAAAGCGCCTTCAACGTATTCGCCCATTCTC 630
BSNT_01724___ 643 CACCCTGATAAAAATAAGGAGCGGCGTGATACAATTCTAGGCATGATGAA 692
.|.||.||.||||....|||||||||..||...|||||.|||||||||||
BL01071___pbp 631 AATCCGGAAAAAAGCCGGGAGCGGCGCAATGTCATTCTCGGCATGATGAA 680
BSNT_01724___ 693 TGACCAAGGCTATATCAGTGCGAAAGAGGCTGTCACCGCACAGGGCCGAA 742
.||.||.||.||||||||..|.||.||..|.||||..||.||.|||.|.|
BL01071___pbp 681 CGAGCAGGGATATATCAGCTCAAAGGAAACCGTCAGGGCCCAAGGCAGCA 730
BSNT_01724___ 743 CGCTTGGACTGCACGTG-AAGAAACAGTCGGAAACACCTTGGTTTGACAG 791
|..|.||.||.||.||| |||||| |.||..|||..||.|||.|||||||
BL01071___pbp 731 CATTGGGGCTCCATGTGAAAGAAA-AATCAAAAAATCCGTGGCTTGACAG 779
BSNT_01724___ 792 CTACATTGACCTTGTGATCAAAGAGGCGGAAGACAAGTATTCCATTTCTG 841
|||.|||||.|||||.||.|||||.|||||||||||.|||||.||.||..
BL01071___pbp 780 CTATATTGATCTTGTCATGAAAGAAGCGGAAGACAAATATTCGATATCGA 829
BSNT_01724___ 842 GGGAGCAGCTTCTTCAAGGAGGATACACGATCAAGGTGCCGCTCGA---T 888
|.||.||||||||.|||||.|||||||||||||..||.|||||||| |
BL01071___pbp 830 GCGAACAGCTTCTCCAAGGCGGATACACGATCAGTGTTCCGCTCGATGTT 879
BSNT_01724___ 889 TCGAAGCTGCAGAAAACGGCTTACCAGGTGATGAAAGAGGGTAGCTATTA 938
|||| |.||.|||.||||.|||..|.|||||||..|||...||||||.
BL01071___pbp 880 TCGA---TTCAAAAAGCGGCCTACACGCTGATGAAGCAGGACGGCTATTT 926
BSNT_01724___ 939 TCCCGGAACAGATCAGAATGCCGAGGGAAGCGCGGTCTTTATTAATAACA 988
||||||.|||||..|.||.||.||.||.|||||.||.|||||..||||||
BL01071___pbp 927 TCCCGGCACAGACAACAAAGCTGAAGGGAGCGCCGTTTTTATCGATAACA 976
BSNT_01724___ 989 AGACAGGCGGTGTAGAAGCGGCCATCGGCGGAAGGGATTACACATCC-AA 1037
.|||||||||.||||.|||.||..||||.|||.||||.||..| ||| ||
BL01071___pbp 977 GGACAGGCGGCGTAGTAGCCGCTCTCGGGGGACGGGAATATGC-TCCAAA 1025
BSNT_01724___ 1038 AGGATATAACCGTGTCACAGCTGTCCGCCAGCCGGGTTCCACATTTAAGC 1087
|||.||||||.|.|.|||.||....||||||||||||||.||.|||||.|
BL01071___pbp 1026 AGGCTATAACAGGGCCACCGCCCAGCGCCAGCCGGGTTCGACGTTTAAAC 1075
BSNT_01724___ 1088 CGCTTGCTGTATACGGACCGGCGATGCAGGAAAAGAAATTTAAGCCATAT 1137
|||||||.||||||||.||.||..|..|.||||||...||.|||||.|||
BL01071___pbp 1076 CGCTTGCCGTATACGGCCCCGCTCTTGAAGAAAAGCTGTTCAAGCCGTAT 1125
BSNT_01724___ 1138 TCTCTATTGAAGGATGAGTTGCAGTCCTACGGAGATTATACGCCGAAAAA 1187
||..|..|..|||||.|...||.|||.|||||.|..||..||||.|||||
BL01071___pbp 1126 TCGATGCTCGAGGATAAACAGCTGTCATACGGCGGCTACTCGCCTAAAAA 1175
BSNT_01724___ 1188 CTACGACAGCCGGTATGAGGGCGAAGTCACTATGTCTGACGCCATTACGT 1237
|||.|||.|||..||.|.||||.|.|||.|.|||...||.||..|.||.|
BL01071___pbp 1176 CTATGACGGCCAATACGCGGGCAAGGTCTCGATGGTGGATGCGCTGACAT 1225
BSNT_01724___ 1238 ACAGCAAAAACGCGCCGGCTGTCTGGACGCTGAATGAGATCGGCGTCGAA 1287
||||||||||||||||.|||||.||||||.|.|||||||||||..|||||
BL01071___pbp 1226 ACAGCAAAAACGCGCCTGCTGTATGGACGTTAAATGAGATCGGAATCGAA 1275
BSNT_01724___ 1288 ACAGGAAAATCTTATTTGAAAGC--AAACGGCATTGATATCCCTGATGAA 1335
||.|..||..|||||.| .||| .|..|||||..|..|.||.||||||
BL01071___pbp 1276 ACGGTGAAGCCTTATCT--CAGCCGTATGGGCATGAACGTGCCGGATGAA 1323
BSNT_01724___ 1336 GGACTTGCTCTCGCTCTAGGAGGCTTGGAAAAAGGCGTTTCGCCGCTCCA 1385
||.||.||..|.|..|||||.||..||||||||||.||.|||||||||.|
BL01071___pbp 1324 GGGCTGGCATTGGGGCTAGGCGGTCTGGAAAAAGGGGTGTCGCCGCTCGA 1373
BSNT_01724___ 1386 GCTTGCCGGCGCGTTTCATACATTTGCCGCGAAT---GGAACGTATACGG 1432
|||||||||.||.|..|..||||| |||.||| |||...||.||.|
BL01071___pbp 1374 GCTTGCCGGGGCATACCGGACATT---CGCAAATTCAGGACAATACACCG 1420
BSNT_01724___ 1433 AACCTTTCTTTATCTCGAGCATAATA--------GATGAAGACGGAGAAA 1474
|.||.||.||||| |||.| ||||||.||||.||
BL01071___pbp 1421 AGCCGTTTTTTAT--------TAAAAAAATCACCGATGAAAACGGGGA-- 1460
BSNT_01724___ 1475 CAATAGCCGATCAT-------AAAGAGGAA-----GGAAAGCGGGTTTTC 1512
..|||| .|.|||||| ||||| .|||||||
BL01071___pbp 1461 --------TGTCATGTTCCGCCACGAGGAAAAATCGGAAA--AGGTTTTC 1500
BSNT_01724___ 1513 AGCAAGCAGACGTCTTGGAATATGACGAGAATGCTGCAGCAGGTAGTCAA 1562
|||||.||.||..|.|||||.||||||.|.||||||.||.||||.||.||
BL01071___pbp 1501 AGCAAACAAACAGCGTGGAACATGACGCGGATGCTGGAGGAGGTCGTGAA 1550
BSNT_01724___ 1563 AAAGGGAACGGCCACGTCCGGCGCCTATCACGGCGACCTGGCGGGAAAAA 1612
||..|||||||..|.|.||||.|..|.|..|||.||..|.||.|||||||
BL01071___pbp 1551 AAGCGGAACGGGAAAGGCCGGTGATTTTTCCGGGGAGATTGCAGGAAAAA 1600
BSNT_01724___ 1613 CAGGTTCTACATCTTATAC-----AGGCGTCTCCGGCGCGACAAAGGACG 1657
|.|||||.||..|.||||| |.|.| ||||..||.||.||||
BL01071___pbp 1601 CGGGTTCGACCACGTATACCGGAAAAGAG-----GGCGGAACTAAAGACG 1645
BSNT_01724___ 1658 CTTGGTTTGCAGGCTATACGCCGAAAATAACCGGGGCAGTCTGGATGGGC 1707
|.||||||||.||.||||||||..||.|.||.||.||.|||||||||||.
BL01071___pbp 1646 CCTGGTTTGCGGGGTATACGCCCGAAGTGACGGGAGCTGTCTGGATGGGA 1695
BSNT_01724___ 1708 TATGACAAAACGGATCAAAACCATTATTTGAAAGCCGGGAGCTCATACCC 1757
||.||.|||||||||.|...|||||||||.||||.|||.|||.|.||.||
BL01071___pbp 1696 TACGATAAAACGGATGAGTCCCATTATTTAAAAGGCGGCAGCGCTTATCC 1745
BSNT_01724___ 1758 GACGCGGCTGTTTAAGGATATTTTGACACAGGCAGGA-----------GA 1796
|||..||||||||||.||.|||||.|.|| |||..| ||
BL01071___pbp 1746 GACAAGGCTGTTTAAAGACATTTTAAAAC--GCACCAACCATAAGCCTGA 1793
BSNT_01724___ 1797 AACCGGTCATGTGTTCACAAA---GCCTAAAAACATTAAAGACCTGGAAA 1843
| |||| || || ||||.||....|.|||||.|||||.|
BL01071___pbp 1794 A--CGGT------TT----AAGGCGCCTGAAGGGGTAAAAGATCTGGACA 1831
BSNT_01724___ 1844 GCCCGATTGAGTTGAAGCCGGTC-AAAACACT-CACAGCCGATTACACAT 1891
|.||||| |.||| || ||.|| || .|.||| .
BL01071___pbp 1832 GGCCGAT-------ACGCC--TCGAAGAC-CTGGAAAGC----------G 1861
BSNT_01724___ 1892 TTAAAGCAGCGGGACT----CTTTA---CTAT-----TGA---------- 1919
|||||||| |||| ||||| |.|| |||
BL01071___pbp 1862 TTAAAGCA----GACTATTCCTTTACGCCGATGGGGCTGATTACGGTGTC 1907
BSNT_01724___ 1920 ATTAAAGTGGGACGCTCAAGAGGATGATCGGGCCGTATACAGAATTTATG 1969
||||||.|||.|.|..|||||||||.|..|||..|.||||.||||.||||
BL01071___pbp 1908 ATTAAAATGGCATGAACAAGAGGATAAAAGGGTTGAATACCGAATATATG 1957
BSNT_01724___ 1970 TAAACAAGGACGGCGAGGAGACGCTTCTTGATTCGGTTGAAGGG-AAGGG 2018
.||..||..||||..|.||.|||||..|||||.||||| ||||| ||.||
BL01071___pbp 1958 AAAGGAAAAACGGAAAAGAAACGCTGATTGATACGGTT-AAGGGAAAAGG 2006
BSNT_01724___ 2019 AAGCTATGAAATTCCTTATGCCAACTTATTTTCGGGCGCGTCTTATAAAA 2068
|||||.|..|||.||||||||.|||.|.|||||.|..||.||.||.||||
BL01071___pbp 2007 AAGCTTTTCAATCCCTTATGCAAACATCTTTTCCGATGCTTCCTACAAAA 2056
BSNT_01724___ 2069 TTGTGCCTTATAATACACAGACAAAAAGAGAAGGGGAAGGAACCGATTAC 2118
||||.||.||.|||.|.|||||.||||.|||.||..||||.||.|||||.
BL01071___pbp 2057 TTGTTCCATACAATCCGCAGACGAAAACAGAGGGAAAAGGGACTGATTAT 2106
BSNT_01724___ 2119 GTTCAGCCAAAATTGTTTTCCTC------TTAA 2145
|||.|.||.|||.|||||.|.|| |||.
BL01071___pbp 2107 GTTGAACCGAAAGTGTTTCCTTCGGGTCATTAG 2139
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