Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00221 and BL01052
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:54
# Commandline: needle
# -asequence dna-align/BSNT_00221___rplD.1.5803.seq
# -bsequence dna-align/BL01052___rplD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00221___rplD-BL01052___rplD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00221___rplD-BL01052___rplD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00221___rplD
# 2: BL01052___rplD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity: 563/624 (90.2%)
# Similarity: 563/624 (90.2%)
# Gaps: 0/624 ( 0.0%)
# Score: 2571.0
#
#
#=======================================
BSNT_00221___ 1 ATGCCAAAAGTAGCATTATACAACCAAAACGGTTCTACTGCTGGTGACAT 50
||||||||||||||.|||||.||||||||||||||||||||||||||.||
BL01052___rpl 1 ATGCCAAAAGTAGCTTTATATAACCAAAACGGTTCTACTGCTGGTGATAT 50
BSNT_00221___ 51 CGAATTAAACGCTTCTGTATTTGGTATCGAACCAAATGAGAGTGTTGTAT 100
|||||||||||..|||||||||||.|||||.|||||||||||.||.||||
BL01052___rpl 51 CGAATTAAACGACTCTGTATTTGGAATCGAGCCAAATGAGAGCGTAGTAT 100
BSNT_00221___ 101 TCGACGCTATTCTTATGCAAAGAGCTTCCTTACGTCAAGGAACTCACAAA 150
|||||||||||||||||||||||||||||||.||||||||||||||.|||
BL01052___rpl 101 TCGACGCTATTCTTATGCAAAGAGCTTCCTTGCGTCAAGGAACTCATAAA 150
BSNT_00221___ 151 GTAAAAAATCGTTCTGAAGTACGCGGCGGAGGTCGTAAACCATGGCGTCA 200
||||||||||||||.||||||||.|||||||||||.|||||.||||||||
BL01052___rpl 151 GTAAAAAATCGTTCGGAAGTACGTGGCGGAGGTCGCAAACCTTGGCGTCA 200
BSNT_00221___ 201 AAAAGGTACTGGACGTGCCCGTCAAGGTTCAATCCGTTCACCGCAATGGC 250
|||||||||.||.|||||.||||||||.||.|||||||||||||||||||
BL01052___rpl 201 AAAAGGTACCGGCCGTGCTCGTCAAGGATCTATCCGTTCACCGCAATGGC 250
BSNT_00221___ 251 GCGGAGGTGGTGTCGTATTCGGCCCAACACCACGCAGCTATTCTTATAAA 300
|||||||||||.||||||||||.||.|||||||||||||||.|.||||||
BL01052___rpl 251 GCGGAGGTGGTATCGTATTCGGTCCTACACCACGCAGCTATGCATATAAA 300
BSNT_00221___ 301 TTACCTAAAAAAGTTCGCCGCTTGGCAATCAAATCAGTATTGTCTTCTAA 350
|||||.||||||||||||||||||||.||||||||||.||||||||||||
BL01052___rpl 301 TTACCGAAAAAAGTTCGCCGCTTGGCTATCAAATCAGCATTGTCTTCTAA 350
BSNT_00221___ 351 AGTGATCGACAACAATATCATCGTTCTTGAAGATCTTACTCTTGATACGG 400
|||||..||||||||..|.|||||||||||||||||||.|||||||.|||
BL01052___rpl 351 AGTGAATGACAACAACTTGATCGTTCTTGAAGATCTTAATCTTGATGCGG 400
BSNT_00221___ 401 CTAAAACAAAAGAAATGGCAGCTATCCTTAAAGGGTTATCTGTTGAGAAA 450
.|||||||||||||||||||||||||||||||||..|.|||.|.|||||.
BL01052___rpl 401 TTAAAACAAAAGAAATGGCAGCTATCCTTAAAGGTCTGTCTATCGAGAAG 450
BSNT_00221___ 451 AAAGCTTTAATCGTAACTGCGGATGCAAACGAAGCAGTAGCATTATCTGC 500
||||||||||||||||||||||||||||||||..||||.|.|.|||||||
BL01052___rpl 451 AAAGCTTTAATCGTAACTGCGGATGCAAACGAGACAGTTGAACTATCTGC 500
BSNT_00221___ 501 TCGTAACATTCCTGGAGTTACTGTTGTTGAAGCTAATGGAATCAACGTTT 550
|||.|||.||||.|||||||||||||||||||||||.|||||||||||..
BL01052___rpl 501 TCGCAACCTTCCAGGAGTTACTGTTGTTGAAGCTAACGGAATCAACGTCC 550
BSNT_00221___ 551 TAGACGTTGTCAACCACGAGAAGCTTCTGATTACAAAAGCAGCGGTTGAA 600
|.||.||||||...||||||||||||.||||.||.|||||||||||||||
BL01052___rpl 551 TCGATGTTGTCGGTCACGAGAAGCTTGTGATGACGAAAGCAGCGGTTGAA 600
BSNT_00221___ 601 AAAGTAGAGGAGGTGCTTGCATAA 624
||||||||||||||||||||||||
BL01052___rpl 601 AAAGTAGAGGAGGTGCTTGCATAA 624
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