Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00235 and BL01036

See Amino acid alignment / Visit BSNT_00235 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00235___rplF.1.5803.seq
#    -bsequence dna-align/BL01036___rplF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00235___rplF-BL01036___rplF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00235___rplF-BL01036___rplF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00235___rplF
# 2: BL01036___rplF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     480/540 (88.9%)
# Similarity:   480/540 (88.9%)
# Gaps:           3/540 ( 0.6%)
# Score: 2161.0
# 
#
#=======================================

BSNT_00235___      1 ATGTCTCGTGTAGGTAAGAAGCTACTTGAGATTCCTTCTGATGTTACAGT     50
                     ||||||||||||||||||||||||||||||||||||||.|..||||||||
BL01036___rpl      1 ATGTCTCGTGTAGGTAAGAAGCTACTTGAGATTCCTTCAGGCGTTACAGT     50

BSNT_00235___     51 AACGTTAAATGATAACAACACTGTAGCTGTGAAAGGACCAAAAGGAGAAT    100
                     .||..|.||.|   |||||||||||.|.||||||||||||||||||||||
BL01036___rpl     51 TACTCTGAACG---ACAACACTGTAACCGTGAAAGGACCAAAAGGAGAAT     97

BSNT_00235___    101 TAACTCGTACGTTTCACCCTGATATGGAGATTAAAGTAGAGGACAATGTG    150
                     ||||||||||||||||.|||||||||.||||||||.|.|||||||||||.
BL01036___rpl     98 TAACTCGTACGTTTCATCCTGATATGAAGATTAAAATTGAGGACAATGTA    147

BSNT_00235___    151 CTTACAGTCGCTCGTCCTTCTGATCAAAAAGAGCACCGTGCCCTGCATGG    200
                     |||||.||.|..||||||||.|||.|.|||||.||||||||.||||||||
BL01036___rpl    148 CTTACTGTAGAACGTCCTTCAGATAATAAAGAACACCGTGCGCTGCATGG    197

BSNT_00235___    201 TACGACTCGCAGTCTGCTTGGCAACATGGTTGAAGGTGTATCTAAAGGAT    250
                     .||.||||||||..|..|.||.||||||||||||||||||||||||||.|
BL01036___rpl    198 CACAACTCGCAGCATCATCGGAAACATGGTTGAAGGTGTATCTAAAGGTT    247

BSNT_00235___    251 TTGAAAGAGGTTTGGAATTAGTCGGTGTCGGTTACCGTGCTTCTAAATCC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL01036___rpl    248 TTGAAAGAGGTTTGGAATTAGTCGGTGTCGGTTACCGTGCTTCTAAATCC    297

BSNT_00235___    301 GGAAATAAACTTGTTTTAAACGTTGGATACTCTCATCCTGTTGAGATCGT    350
                     |||||.|||||||||||.|||||||||||||||||.|||||.||.|||||
BL01036___rpl    298 GGAAACAAACTTGTTTTGAACGTTGGATACTCTCACCCTGTAGAAATCGT    347

BSNT_00235___    351 TCCTGAAGAAGGCATCGAAATCGAAGTTCCTTCTCAAACAAAAGTAGTTG    400
                     |||||||.|.||.||.||||||||||||||.||||||||||||||.||||
BL01036___rpl    348 TCCTGAAAACGGAATTGAAATCGAAGTTCCATCTCAAACAAAAGTGGTTG    397

BSNT_00235___    401 TAAAAGGTACAGACAAAGAACGCGTAGGAGCTATTGCTGCTAACATCCGC    450
                     |||||||||||||.||||||||.||.|||||||.||||||.|||||.|||
BL01036___rpl    398 TAAAAGGTACAGATAAAGAACGTGTTGGAGCTACTGCTGCAAACATTCGC    447

BSNT_00235___    451 GCTGTACGTTCTCCAGAGCCTTACAAAGGTAAAGGAATCCGCTACGAAGG    500
                     |||||||||||||||||||||||||||||.|||||.||||||||.|||||
BL01036___rpl    448 GCTGTACGTTCTCCAGAGCCTTACAAAGGCAAAGGGATCCGCTATGAAGG    497

BSNT_00235___    501 TGAAGTTGTTCGCCGTAAAGAAGGTAAATCTGCTAAGTAA    540
                     .|||.|.|||||.|||||||||||||||||||||||||||
BL01036___rpl    498 AGAAATGGTTCGTCGTAAAGAAGGTAAATCTGCTAAGTAA    537


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