Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00235 and BL01036
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00235___rplF.1.5803.seq
# -bsequence dna-align/BL01036___rplF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00235___rplF-BL01036___rplF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00235___rplF-BL01036___rplF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00235___rplF
# 2: BL01036___rplF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 480/540 (88.9%)
# Similarity: 480/540 (88.9%)
# Gaps: 3/540 ( 0.6%)
# Score: 2161.0
#
#
#=======================================
BSNT_00235___ 1 ATGTCTCGTGTAGGTAAGAAGCTACTTGAGATTCCTTCTGATGTTACAGT 50
||||||||||||||||||||||||||||||||||||||.|..||||||||
BL01036___rpl 1 ATGTCTCGTGTAGGTAAGAAGCTACTTGAGATTCCTTCAGGCGTTACAGT 50
BSNT_00235___ 51 AACGTTAAATGATAACAACACTGTAGCTGTGAAAGGACCAAAAGGAGAAT 100
.||..|.||.| |||||||||||.|.||||||||||||||||||||||
BL01036___rpl 51 TACTCTGAACG---ACAACACTGTAACCGTGAAAGGACCAAAAGGAGAAT 97
BSNT_00235___ 101 TAACTCGTACGTTTCACCCTGATATGGAGATTAAAGTAGAGGACAATGTG 150
||||||||||||||||.|||||||||.||||||||.|.|||||||||||.
BL01036___rpl 98 TAACTCGTACGTTTCATCCTGATATGAAGATTAAAATTGAGGACAATGTA 147
BSNT_00235___ 151 CTTACAGTCGCTCGTCCTTCTGATCAAAAAGAGCACCGTGCCCTGCATGG 200
|||||.||.|..||||||||.|||.|.|||||.||||||||.||||||||
BL01036___rpl 148 CTTACTGTAGAACGTCCTTCAGATAATAAAGAACACCGTGCGCTGCATGG 197
BSNT_00235___ 201 TACGACTCGCAGTCTGCTTGGCAACATGGTTGAAGGTGTATCTAAAGGAT 250
.||.||||||||..|..|.||.||||||||||||||||||||||||||.|
BL01036___rpl 198 CACAACTCGCAGCATCATCGGAAACATGGTTGAAGGTGTATCTAAAGGTT 247
BSNT_00235___ 251 TTGAAAGAGGTTTGGAATTAGTCGGTGTCGGTTACCGTGCTTCTAAATCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||
BL01036___rpl 248 TTGAAAGAGGTTTGGAATTAGTCGGTGTCGGTTACCGTGCTTCTAAATCC 297
BSNT_00235___ 301 GGAAATAAACTTGTTTTAAACGTTGGATACTCTCATCCTGTTGAGATCGT 350
|||||.|||||||||||.|||||||||||||||||.|||||.||.|||||
BL01036___rpl 298 GGAAACAAACTTGTTTTGAACGTTGGATACTCTCACCCTGTAGAAATCGT 347
BSNT_00235___ 351 TCCTGAAGAAGGCATCGAAATCGAAGTTCCTTCTCAAACAAAAGTAGTTG 400
|||||||.|.||.||.||||||||||||||.||||||||||||||.||||
BL01036___rpl 348 TCCTGAAAACGGAATTGAAATCGAAGTTCCATCTCAAACAAAAGTGGTTG 397
BSNT_00235___ 401 TAAAAGGTACAGACAAAGAACGCGTAGGAGCTATTGCTGCTAACATCCGC 450
|||||||||||||.||||||||.||.|||||||.||||||.|||||.|||
BL01036___rpl 398 TAAAAGGTACAGATAAAGAACGTGTTGGAGCTACTGCTGCAAACATTCGC 447
BSNT_00235___ 451 GCTGTACGTTCTCCAGAGCCTTACAAAGGTAAAGGAATCCGCTACGAAGG 500
|||||||||||||||||||||||||||||.|||||.||||||||.|||||
BL01036___rpl 448 GCTGTACGTTCTCCAGAGCCTTACAAAGGCAAAGGGATCCGCTATGAAGG 497
BSNT_00235___ 501 TGAAGTTGTTCGCCGTAAAGAAGGTAAATCTGCTAAGTAA 540
.|||.|.|||||.|||||||||||||||||||||||||||
BL01036___rpl 498 AGAAATGGTTCGTCGTAAAGAAGGTAAATCTGCTAAGTAA 537
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