Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00236 and BL01035
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00236___rplR.1.5803.seq
# -bsequence dna-align/BL01035___rplR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00236___rplR-BL01035___rplR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00236___rplR-BL01035___rplR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00236___rplR
# 2: BL01035___rplR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 367
# Identity: 302/367 (82.3%)
# Similarity: 302/367 (82.3%)
# Gaps: 8/367 ( 2.2%)
# Score: 1240.0
#
#
#=======================================
BSNT_00236___ 1 ATGATTACGAAAACTAGCAAAAATGCTGCTCGTCTTAAAAGACACGCTCG 50
||||||||||||||.|||||.||||||||.||||||||||||||||||||
BL01035___rpl 1 ATGATTACGAAAACAAGCAAGAATGCTGCACGTCTTAAAAGACACGCTCG 50
BSNT_00236___ 51 TGTTCGCGCTAAACTTTCCGGTACTGCTGAAAGACCGCGCCTGAACGTTT 100
||||||.||.||.|||||.||.||..||||||||||.||.||.||.||||
BL01035___rpl 51 TGTTCGTGCGAAGCTTTCAGGAACCCCTGAAAGACCTCGTCTAAATGTTT 100
BSNT_00236___ 101 TCCGTTCTAACAAGCACATTTACGCTCAAATCATCGATGATGTAAATGGT 150
|||||||.|||||.||.||||||||.|||.|.||||||||.||.||.|||
BL01035___rpl 101 TCCGTTCAAACAAACATATTTACGCACAAGTGATCGATGACGTGAACGGT 150
BSNT_00236___ 151 GTAACACTTGCTAGTGCATCTACTCTCGATAAAGACTTGAACGTTGAAA- 199
||.|||||||..||||||||||||||.|||||||||||.||||.|||||
BL01035___rpl 151 GTTACACTTGTGAGTGCATCTACTCTTGATAAAGACTTTAACGCTGAAAA 200
BSNT_00236___ 200 --GCACTGGAGATACTTCTGCTGCTACTAAAGTTGGAGAATTAGTTGCAA 247
||| |.|||||..||||.|||.|.|||||||||||..|.|||||||
BL01035___rpl 201 TGGCA---GCGATACGGCTGCGGCTGCAAAAGTTGGAGAGCTTGTTGCAA 247
BSNT_00236___ 248 AACGCGCTGCTGAAAAAGGCATTTCTGACGTAGTATTTGACCGTGGCGGA 297
|.||||||.||||||||||.||..|..|.||.||.||.|||||||||||.
BL01035___rpl 248 AGCGCGCTTCTGAAAAAGGTATCACAAATGTCGTGTTCGACCGTGGCGGT 297
BSNT_00236___ 298 TACTTATACCATGGACGTGTAAAAGCTTTGGCTGATGCCGCTCGTGAAGC 347
|||.|.||.|||||||||||||||||.|||||||||||.||.||.|||||
BL01035___rpl 298 TACCTTTATCATGGACGTGTAAAAGCATTGGCTGATGCTGCACGCGAAGC 347
BSNT_00236___ 348 TGGACTTA-AATTTTAA 363
|||| ||| ||||||||
BL01035___rpl 348 TGGA-TTAGAATTTTAA 363
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