Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00238 and BL01033
See
Amino acid alignment /
Visit
BSNT_00238 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00238___rpmD.1.5803.seq
# -bsequence dna-align/BL01033___rpmD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00238___rpmD-BL01033___rpmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00238___rpmD-BL01033___rpmD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00238___rpmD
# 2: BL01033___rpmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 180
# Identity: 168/180 (93.3%)
# Similarity: 168/180 (93.3%)
# Gaps: 0/180 ( 0.0%)
# Score: 792.0
#
#
#=======================================
BSNT_00238___ 1 ATGGCTAAATTAGAAATTACCCTCAAACGAAGTGTAATCGGTCGCCCGGA 50
|||||||||||||||||||||||||||||.|||||||||||.||||||||
BL01033___rpm 1 ATGGCTAAATTAGAAATTACCCTCAAACGCAGTGTAATCGGACGCCCGGA 50
BSNT_00238___ 51 AGACCAACGCGTTACTGTAAGAACACTTGGTTTAAAGAAAACAAACCAAA 100
|||.||.|||.|||||||||||||.|||||||||||||||||||||||||
BL01033___rpm 51 AGATCAGCGCATTACTGTAAGAACGCTTGGTTTAAAGAAAACAAACCAAA 100
BSNT_00238___ 101 CTGTTGTTCATGAAGACAACGCTGCGATCCGTGGTATGATTAATAAAGTA 150
||||.||||||||||||||||||||.|||||.|||||||||||.||||||
BL01033___rpm 101 CTGTCGTTCATGAAGACAACGCTGCAATCCGCGGTATGATTAACAAAGTA 150
BSNT_00238___ 151 TCTCATTTAGTTTCTGTTAAAGAACAATAA 180
|||||||||||||||||||||||||..|||
BL01033___rpm 151 TCTCATTTAGTTTCTGTTAAAGAACTTTAA 180
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.