Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00240 and BL01031
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00240___secY.1.5803.seq
# -bsequence dna-align/BL01031___secY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00240___secY-BL01031___secY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00240___secY-BL01031___secY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00240___secY
# 2: BL01031___secY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1318
# Identity: 1027/1318 (77.9%)
# Similarity: 1027/1318 (77.9%)
# Gaps: 44/1318 ( 3.3%)
# Score: 3916.0
#
#
#=======================================
BSNT_00240___ 1 TTGTTTAAAACAATCTCCAACTTTATGCGTGTGAGTGATATCAGGAATAA 50
||||||||.|||||||||||.|||||||||||||..|||||..|||||||
BL01031___sec 1 TTGTTTAAGACAATCTCCAATTTTATGCGTGTGAAGGATATTCGGAATAA 50
BSNT_00240___ 51 AATCATATTCACTTTACTCATGCTTATCGTCTTTCGCATAGGTGCGTTTA 100
.||.||.||||||.|..|.|||||||||||||||||..|.|||.||||.|
BL01031___sec 51 GATTATCTTCACTCTTTTAATGCTTATCGTCTTTCGTCTCGGTTCGTTCA 100
BSNT_00240___ 101 TTCCTGTGCCTTACGTTAACGCTGAAGCGTTACAGGCGCAGTCTCAAATG 150
||||||||||..||||.|||.|.||||..|||.||||.|||..|||||||
BL01031___sec 101 TTCCTGTGCCGCACGTAAACACAGAAGTTTTAAAGGCACAGGATCAAATG 150
BSNT_00240___ 151 GGTGTTTTTGATCTCCTTAATACATTTGGCGGCGGTGCGCTTTACCAATT 200
.|.||.||||...|.||.||.|||||||||||||||||..|.|.|.|.||
BL01031___sec 151 AGCGTATTTGGGATTCTAAACACATTTGGCGGCGGTGCATTGTTCAACTT 200
BSNT_00240___ 201 TTCCATTTTCGCAATGGGAATTACTCCTTATATCACGGCTTCGATCATCA 250
.||||||.|.||.||||||||.|..|||||.|||||.|||||.|||||||
BL01031___sec 201 CTCCATTCTTGCGATGGGAATCATGCCTTACATCACAGCTTCTATCATCA 250
BSNT_00240___ 251 TTCAGCTGCTTCAGATGGATGTTGTACCGAAGTTTACCGAGTGGTCTAAG 300
|.|||||.||.||||||||||||||.||||||||||||||.|||||||||
BL01031___sec 251 TCCAGCTCCTGCAGATGGATGTTGTGCCGAAGTTTACCGAATGGTCTAAG 300
BSNT_00240___ 301 CAAGGTGAAGTTGGCCGCCGTAAATTAGCTCAGTTCACAAGGTACTTTAC 350
||.||.||||||||.|||||.|||.||||||||||||||||||||||.||
BL01031___sec 301 CAGGGGGAAGTTGGTCGCCGAAAACTAGCTCAGTTCACAAGGTACTTCAC 350
BSNT_00240___ 351 GATTGTGCTTGGTTTCATCCAAGCGTTAGGTATGTCATATGGATTCAACA 400
|||.||.|||||.||.|||||.||.|||||||||||.||.||.||.||||
BL01031___sec 351 GATCGTTCTTGGATTTATCCAGGCTTTAGGTATGTCTTACGGGTTTAACA 400
BSNT_00240___ 401 ATCTGGCAAACGGTATGCTGATCGAAAAATCCGGTGTATCG--ACATATC 448
|..||||...|||...|.|||| .|.|.|.|||| |..||| ||.|||.
BL01031___sec 401 ACATGGCCGGCGGCGCGTTGAT-TACAGACCCGG-GAGTCGGTACTTATT 448
BSNT_00240___ 449 TTATCATTGCTTTAGTACTCACTGGCGGAACTGCCTTTTTAATGTGGCTT 498
|..|.|||||..|.|||||.||||..||||||||.||||||||||||||.
BL01031___sec 449 TGCTTATTGCGATTGTACTAACTGCTGGAACTGCTTTTTTAATGTGGCTG 498
BSNT_00240___ 499 GGGGAACAAATTACTTCTCATGGAGTAGGCAACGGAATATCGATCATTAT 548
||.|||||||||||.|||||||||||.||.|||||||||||.||.||.||
BL01031___sec 499 GGAGAACAAATTACGTCTCATGGAGTTGGTAACGGAATATCCATTATCAT 548
BSNT_00240___ 549 CTTCGCGGGGATTGTGTCTAGTATTCCAAAAACAATTGGGCAAATATATG 598
||||||.||.||.||..|..|||||||..|.||.|||...||.||.||.|
BL01031___sec 549 CTTCGCCGGTATCGTTGCCGGTATTCCGCAGACGATTAATCAGATCTACG 598
BSNT_00240___ 599 AGACT---CAATTTGTCG--GCAGCAACGATCAGTTGTTTATTCATATTG 643
|| ||.|||||.| ||.|.| ||||||||.||..|.||.||..
BL01031___sec 599 ---CTCAGCAGTTTGTAGATGCTGGA--GATCAGTTATTCTTGCAAATCA 643
BSNT_00240___ 644 TGAAA----GTCGCACTTCTTGTGATTGCGATTTTAGCAGTTATTGTTGG 689
| ||| |||| ||.|..||.|||||||||||||..||.|.|||||
BL01031___sec 644 T-AAAGGTTGTCG---TTATATTGGTTGCGATTTTAGCGATTGTCGTTGG 689
BSNT_00240___ 690 AGTTATTTTCATTCAGCAAGCCGTACGGAAAATTGCGATTCAATATGCTA 739
.|||||||||||.||.||.||.||..|.|||||..|.|||||||||||.|
BL01031___sec 690 CGTTATTTTCATCCAACAGGCGGTTAGAAAAATCTCAATTCAATATGCGA 739
BSNT_00240___ 740 AAGGCACAGGTCGTTCACC---TGCTGGCGGGGGTCAGTCTACACACCTT 786
||||..||||.|||||||| |.||||| ||.||||||||||||.|.
BL01031___sec 740 AAGGTTCAGGCCGTTCACCGGTTCCTGGC---GGCCAGTCTACACACTTG 786
BSNT_00240___ 787 CCATTGAAAGTGAATCCTGCAGGGGTTATTCCGGTAATCTTTGCGGTTGC 836
||..||||.||.||.||.||.||.|||||||||||.||||||||.||.||
BL01031___sec 787 CCGCTGAAGGTTAACCCGGCGGGAGTTATTCCGGTTATCTTTGCCGTAGC 836
BSNT_00240___ 837 GTTTTTGATAACGCCGCGGACGATCGCGTCATTCTTTGGAACAAACGATG 886
.|||.|.|..||.||||||||..|.||..||||||||||..|.||.||.|
BL01031___sec 837 ATTTATCACCACTCCGCGGACCGTGGCAACATTCTTTGGCTCCAATGACG 886
BSNT_00240___ 887 TGACAAAGTGGATTCAAAACAAC-TTTGATAATACGCATCCGGTGGGTAT 935
|.||.||.||||||||||| ||| ||||||.|.|||||||||||.||.||
BL01031___sec 887 TCACGAATTGGATTCAAAA-AACGTTTGATTACACGCATCCGGTCGGAAT 935
BSNT_00240___ 936 GGCGA-TATATGTTGCGTTGATTATTGCCTTTACGTACTTTTATGCTTTT 984
|| || |.||||..||.|||||.||.||||||||.||.||.|||||.|||
BL01031___sec 936 GG-GAGTTTATGCAGCATTGATCATCGCCTTTACCTATTTCTATGCATTT 984
BSNT_00240___ 985 GTACAGGTAAACCCTGAACAAATGGCTGATAACCTTAAAAAACAGGGTGG 1034
||.|||||.||||||||.||||||||.|||||.|||||||||||.|||||
BL01031___sec 985 GTGCAGGTTAACCCTGAGCAAATGGCCGATAATCTTAAAAAACAAGGTGG 1034
BSNT_00240___ 1035 CTATATCCCGGGGGTTCGTCCAGGGAAAATGACTCAAGATAGAATTACGA 1084
||||||.|||||.|||||||||||.|||||||||||||||||||||||||
BL01031___sec 1035 CTATATTCCGGGAGTTCGTCCAGGAAAAATGACTCAAGATAGAATTACGA 1084
BSNT_00240___ 1085 GCATTTTGTATCGACTTACGTTTGTGGGTTCTATATTCTTAGCCGTGATT 1134
|||||||||||||||||||.|||||.||.||.||||||||.|||||||||
BL01031___sec 1085 GCATTTTGTATCGACTTACATTTGTAGGCTCCATATTCTTGGCCGTGATT 1134
BSNT_00240___ 1135 TCCATTCTTCCTATCTTTTTCATTCAAT-TCGCTGGATTGCC----TCAA 1179
.|||||||||||.||||.|||.|| ||| |.|||||..|||| ||
BL01031___sec 1135 GCCATTCTTCCTGTCTTGTTCGTT-AATATTGCTGGGCTGCCTTCTTC-- 1181
BSNT_00240___ 1180 AGTGCACAAATTGGCGGAACATCTTTGTTAATTGTTGTCGGGGTAGC-CT 1228
||||||||||||.||||||..||||.|.|||||..|||||||.|| ||
BL01031___sec 1182 --TGCACAAATTGGTGGAACAAGTTTGCTGATTGTCATCGGGGTTGCACT 1229
BSNT_00240___ 1229 TGGAGACAATGAAACAACTAGAAAGCCAGTTGGTGAAACGAAACTACCGT 1278
| ||.||||||||.||.||.|||||||||.||||.|||||||||||.|||
BL01031___sec 1230 T-GAAACAATGAAGCAGCTTGAAAGCCAGCTGGTAAAACGAAACTATCGT 1278
BSNT_00240___ 1279 GGATTTATGAAAAACTAG 1296
|||||||||||..|||||
BL01031___sec 1279 GGATTTATGAAGCACTAG 1296
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