Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01260 and BL00959
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01260___yfmO.1.5803.seq
# -bsequence dna-align/BL00959___yfmO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01260___yfmO-BL00959___yfmO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01260___yfmO-BL00959___yfmO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01260___yfmO
# 2: BL00959___yfmO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 838/1261 (66.5%)
# Similarity: 838/1261 (66.5%)
# Gaps: 146/1261 (11.6%)
# Score: 2676.5
#
#
#=======================================
BSNT_01260___ 1 ATGGATAAGACAACACAAGTGAATCAGAAAACGGGTTTGCTCAGCCAGCC 50
|||.||.| ||||| ||..|| ||||..|..||.||.|.|..|||||
BL00959___yfm 1 ATGAATGA-ACAAC-CACCTG----AGAACTCCAGTATGTTTAAACAGCC 44
BSNT_01260___ 51 AAAAGCGGTATGGGCTGTCGCGTTTGCCTGTGTGATTTCCTTTATGGGAA 100
|||||||||.|||||.||.||.||||||||.|||||.||.||||||||.|
BL00959___yfm 45 AAAAGCGGTCTGGGCGGTAGCCTTTGCCTGCGTGATCTCGTTTATGGGGA 94
BSNT_01260___ 101 TCGGGCTGGTCGATCCAATTCTTCCGGCCATTGCCGCA-CAACTACATGC 149
|||||||.||||||||.|||||.|||||.||.| |||| ||.||.|||||
BL00959___yfm 95 TCGGGCTCGTCGATCCGATTCTGCCGGCGATCG-CGCAGCAGCTGCATGC 143
BSNT_01260___ 150 TTCACCTAGTGAAGTATCACTCTTGTTTACAAGTTATTTGCTTGTAACCG 199
|||.||.||..|.||.||.||.||.||||||||.|||.||.|.||.||.|
BL00959___yfm 144 TTCCCCCAGCCAGGTTTCGCTTTTATTTACAAGCTATCTGTTAGTCACAG 193
BSNT_01260___ 200 GATTTATGATGTTTTTCTCAGGAGCCATTTCCAGCCGCATCGGCGCGAAA 249
|.|||...|||.||||.|||||.||..|.||.|||||.||.||.||.||.
BL00959___yfm 194 GTTTTGCCATGCTTTTATCAGGCGCTGTCTCGAGCCGGATTGGAGCAAAG 243
BSNT_01260___ 250 TGGACATTAATTCTCGGACTTATTTTTATTATTGTGTTTGCGGGGCTTGG 299
..|||.|||||...|||..|.||..|.||.||.||.||||||||.||.||
BL00959___yfm 244 CTGACGTTAATCAGCGGTTTGATCCTGATCATCGTCTTTGCGGGCCTGGG 293
BSNT_01260___ 300 CGGCAGCTCAAGC--TCAATCGCTCAGTTAGTCGGCTATCGCGGCGGCTG 347
||| ||||..|| ||.|||.|||||.|.|||||||..|||||||||||
BL00959___yfm 294 CGG--GCTCTCGCATTCCATCTCTCAGCTTGTCGGCTTCCGCGGCGGCTG 341
BSNT_01260___ 348 GGGATTAGGGAATGCTTTGTTTATTTCAACAGCGCTTGCGGTCATCGT-- 395
||||.|.||.||.||..|||||||.||.||.||||||||.|||||.||
BL00959___yfm 342 GGGACTCGGAAACGCCATGTTTATCTCCACTGCGCTTGCCGTCATTGTCA 391
BSNT_01260___ 396 ---TGGTGTATCAGTCGGAGGAAGCGCCCAAGCGATTATTTTGTATGAGG 442
|||..|.| ||.||||||||..||||.||||||||||||||||
BL00959___yfm 392 GCGTGGCTTCT-----GGCGGAAGCGCAAAAGCCATTATTTTGTATGAGG 436
BSNT_01260___ 443 CTGCGCTCGGTCTCGGGATTTCCGTCGGGCCGCTTGCAGGCGGAGAGCTT 492
||||..|.||..|.||.|||||.||.||.||||||||.||||||||||||
BL00959___yfm 437 CTGCTTTGGGATTGGGCATTTCGGTTGGACCGCTTGCCGGCGGAGAGCTT 486
BSNT_01260___ 493 GGAAGCATTTCATGGCGCGCACCGTTTTTCGGAGTATCTGT--------- 533
||.|..||.||.|||.|.||.|||||||||||.|||||.||
BL00959___yfm 487 GGCACGATATCGTGGAGAGCGCCGTTTTTCGGTGTATCGGTTTTAATGGC 536
BSNT_01260___ 534 -CCTGATGTTTATTACGTTAATCGCGAT-TTCTTTCATGCTTCCGAAATT 581
.|||.|.||| |.||.|| ||.||||.| ||
BL00959___yfm 537 CGCTGCTCTTT----------TGGCCATCTTTTTTCTT----------TT 566
BSNT_01260___ 582 GCCG--------AAACCGGC----GAAA----CGCGTCGGTGTGTTTGAT 615
|||| |||.|.|| |||| | ||||.|||.|
BL00959___yfm 567 GCCGCCTGTCCAAAAGCCGCAGAAGAAAATTTC-CGTCAGTGCG------ 609
BSNT_01260___ 616 GCGATGAAGGCGCTAAAATATAAAGGCCTTTTAACAATGGCGGTATCGGC 665
.||||.||.|||||....||||||||.||.||.||..||.|.|.|.|.||
BL00959___yfm 610 CCGATCAAAGCGCTTCGTTATAAAGGGCTGTTGACGCTGTCAGGAGCCGC 659
BSNT_01260___ 666 ATTCTTATACAACTTTGGATTTTTTATTTTGCTTGCTTATTCTCCGTTCG 715
|||||||||.||.||.||.||.||.|...|||||||.|||||.|||||.|
BL00959___yfm 660 ATTCTTATATAATTTCGGTTTCTTCACCCTGCTTGCATATTCGCCGTTTG 709
BSNT_01260___ 716 TTCTGGATTTAGATGAACACGGTCTTGGATATGTCTTCTTCGGCTGGGGC 765
||||.||.|||.||||||..||.||.||.||||||||.|||||||||||.
BL00959___yfm 710 TTCTTGACTTAAATGAACGGGGCCTCGGCTATGTCTTTTTCGGCTGGGGG 759
BSNT_01260___ 766 CTTCTGCTGGCGATTACGTCAGTCTTTACGGCGCCGCTCGTGCACAAAGC 815
||..|.||.|||||.||.||.||.||||..||.|||..||| |.|||
BL00959___yfm 760 CTGTTTCTTGCGATCACTTCCGTTTTTATCGCTCCGGCCGT----ACAGC 805
BSNT_01260___ 816 G----CTGGGCACAGTGCGTTCGCTCGTCGTTCTCTTTATCGC-CTTTGC 860
| .|.||.||.||.||.||.||..||.||||.||||| || .|||||
BL00959___yfm 806 GGATCTTCGGAACCGTCCGATCTCTGATCCTTCTGTTTAT-GCTGTTTGC 854
BSNT_01260___ 861 GGCT-ATT--CTCGTTATTATGGGGATCTGGACAGACCA----------- 896
.||| ||| |||| ..||.|||||.|||||.||.||
BL00959___yfm 855 AGCTGATTTGCTCG---CGATCGGGATTTGGACGGAGCACATGGCGCTCG 901
BSNT_01260___ 897 TCA----GACTTTGATTATTACATGTATCGTTGTCGCTGGTGCTGTTCTC 942
||| |.| |||.||.| |.||.||.|.|.||||.
BL00959___yfm 902 TCATCGGGGC---GATCATCA------------TAGCCGGAGGTATTCTT 936
BSNT_01260___ 943 GGTATGGTGAATACGATCATGACAACCGCTGTGATGGGTTCTGCGCCGGT 992
||.|||.|.||||||||..||||||||||.|||||||...|.|||||.||
BL00959___yfm 937 GGCATGATCAATACGATTTTGACAACCGCGGTGATGGAAGCCGCGCCTGT 986
BSNT_01260___ 993 TGAACGTTCAATCGCGTCTTCAGCCTACAGCTCAGTCCGCTTCATCGGCG 1042
.|||||.||..|.||.||.||.|||||||||||..||||.||||||||||
BL00959___yfm 987 CGAACGGTCTGTTGCTTCATCTGCCTACAGCTCCATCCGGTTCATCGGCG 1036
BSNT_01260___ 1043 GCGCGCTCGCTCCGTGGATTGCAGGAATGCTGTCAGAACACTTTACTGCA 1092
|.||..|.||.||.|||||.||.||..||.|..|.||.||.||||||||
BL00959___yfm 1037 GGGCCATTGCGCCTTGGATCGCCGGTGTGTTAGCCGATCATTTTACTGC- 1085
BSNT_01260___ 1093 AGC--ACACCATATACAGTAGGCGGAATCGTCGTTTTTGTCGGCAT---- 1136
|| ||.||||||...|.|||..|.||||.|||..|||.||||||
BL00959___yfm 1086 -GCATACTCCATATTTTGCAGGATGCATCGCCGTGCTTGCCGGCATCGCC 1134
BSNT_01260___ 1137 -GCTTGTCCTTCTCATGG-----GACGTAAACATCTTGCTGGAATTAAGG 1180
.||||.| ||| |.||| .||.|.||.||.||.||.|
BL00959___yfm 1135 GTCTTGGC-------TGGAGGCCGCCGT---TATTTGGCGGGCATCAAAG 1174
BSNT_01260___ 1181 CGGGGCATTAA 1191
|.||.||||||
BL00959___yfm 1175 CCGGTCATTAA 1185
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