Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04399 and BL00955
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04399___bioD.1.5803.seq
# -bsequence dna-align/BL00955___bioD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04399___bioD-BL00955___bioD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04399___bioD-BL00955___bioD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04399___bioD
# 2: BL00955___bioD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 745
# Identity: 495/745 (66.4%)
# Similarity: 495/745 (66.4%)
# Gaps: 86/745 (11.5%)
# Score: 1576.5
#
#
#=======================================
BSNT_04399___ 1 TTGAGGGGTTTTTTTGTGACGGGAACTGATACAGAAGTAGGGAAAACGGT 50
.|||.||||||||||||.||||||||.|||||.|.|||.|||||.|||.|
BL00955___bio 1 ATGAAGGGTTTTTTTGTAACGGGAACAGATACGGGAGTCGGGAAGACGTT 50
BSNT_04399___ 51 TATATCCAGCGGTCTTGCTGCTTTATTGAAAGAACATAATAGAGATGTTG 100
|||..|..||||||||||.||||||.|||||||.||..||..||||||.|
BL00955___bio 51 TATCGCTTGCGGTCTTGCCGCTTTACTGAAAGAGCAGCATGTAGATGTCG 100
BSNT_04399___ 101 GGGTGTATAAACCATTTTTAAGCGG-GATATCACGCCATC-ATCCAGATA 148
|.||||.|||.||.|||||.||||| | |.|.|||.|.| ||||..|.|
BL00955___bio 101 GCGTGTTTAAGCCGTTTTTGAGCGGCG--AGCTCGCTAGCGATCCGCAGA 148
BSNT_04399___ 149 GTGATACTAG-TCTGCTGAAAG-ACATGTCGCAGACCAGTCTTTCTCATG 196
||||||| || ||| .|.|||| |||||||..|.||...||||.||.|||
BL00955___bio 149 GTGATAC-AGCTCT-TTTAAAGAACATGTCTGAAACGCCTCTTACTGATG 196
BSNT_04399___ 197 AAGACATTACGCCTTTTGCCTTCAAGGCGCCGCTTGCACCATACGTTGCA 246
||||..|||||||||||...||.||.|.||||||||||||||||...||.
BL00955___bio 197 AAGAGGTTACGCCTTTTATTTTTAAAGAGCCGCTTGCACCATACACAGCT 246
BSNT_04399___ 247 GGGAAACTTGAGGGAAAGACTGTCACCATGGAAGAGGTTTTAAGCCATTG 296
|.|||.||.||.||.|.|||.|||....|||||||.|...|.|.||||||
BL00955___bio 247 GCGAAGCTCGAAGGGAGGACAGTCGGGCTGGAAGATGCCGTGAACCATTG 296
BSNT_04399___ 297 GGGGCGGATTAGAGAAAAA-------CATGAATGCTTCATCGTAGAAGGT 339
| ..|.|||.||| ||.||.|||||||||||.|||||.
BL00955___bio 297 G-------AAAAAGATAAAGGATCGGCACGAGTGCTTCATCGTTGAAGGG 339
BSNT_04399___ 340 GCGGGCGGTATTTCTGTGCCATTGGGAGAGGACTATTTGGTCAGTCATGT 389
||.|||||.|||.|||||||..|.||.|||||.|||||.|||||..|..|
BL00955___bio 340 GCAGGCGGAATTGCTGTGCCGCTCGGGGAGGATTATTTCGTCAGCGACTT 389
BSNT_04399___ 390 CATAAAAGCG------TTGCAG--CTTCCCATGATTATTGTGGCGCGTCC 431
.||.|||||| ||||.| |.|| ||||||||||||||
BL00955___bio 390 GATCAAAGCGCTCGATTTGCCGGCCGTC--------ATTGTGGCGCGTCC 431
BSNT_04399___ 432 TCACCTTGGAACCATTAATCATACCTTTTTAACTGTCAAATATGCAGAAA 481
..|.||.|||||.||.||.|||||.|.||||||.|.|.||||.|||.||.
BL00955___bio 432 CAATCTCGGAACGATCAACCATACGTATTTAACCGCCCAATACGCAAAAC 481
BSNT_04399___ 482 GCATGGGGCTTCCAATTGC-----CGGAATTATCATCAATGGAATCA--- 523
..||||||.|.| || |||.||..|.|||||.||.||||
BL00955___bio 482 AAATGGGGATAC-----GCGTGATCGGCATCGTGATCAACGGCATCAGCA 526
BSNT_04399___ 524 -------GTGACTCTCCTGATGAAGATGAAAAAACCAATCCTGAGATGAT 566
|.|||| .||.|||.|.||.|||||.||.|||||
BL00955___bio 527 GCCGGCCGGGACT----------TGACGAACAGACGAATCCGGACATGAT 566
BSNT_04399___ 567 TGAGCGCTTATGCGGTGTTCCGATTTTAGGGGTTACGCCAAAGCTTGCCA 616
|||..|.||.||||||||.|||.|..|.||.|||||.||.|||||||...
BL00955___bio 567 TGAAAGATTTTGCGGTGTGCCGCTCCTCGGCGTTACACCGAAGCTTGAAG 616
BSNT_04399___ 617 ACG--TTACGAA-AGAAACGGTTCTACATATGGTAAAAGACCATATCAAT 663
||| |.||.|| |.||| |||..||.|||.|.||.||.|||.||.||
BL00955___bio 617 ACGCTTCACCAACACAAA---TTCACCACATGATCAAGGATCATGTCGAT 663
BSNT_04399___ 664 CTATCATTACTGATGAAT------CAAATGGGGG------TATGA 696
.|.||.||..|.|||||| |||||||||| .||||
BL00955___bio 664 GTTTCCTTGATTATGAATCAAATGCAAATGGGGGCAGAAAAATGA 708
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