Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04399 and BL00955

See Amino acid alignment / Visit BSNT_04399 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:34
# Commandline: needle
#    -asequence dna-align/BSNT_04399___bioD.1.5803.seq
#    -bsequence dna-align/BL00955___bioD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04399___bioD-BL00955___bioD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04399___bioD-BL00955___bioD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04399___bioD
# 2: BL00955___bioD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 745
# Identity:     495/745 (66.4%)
# Similarity:   495/745 (66.4%)
# Gaps:          86/745 (11.5%)
# Score: 1576.5
# 
#
#=======================================

BSNT_04399___      1 TTGAGGGGTTTTTTTGTGACGGGAACTGATACAGAAGTAGGGAAAACGGT     50
                     .|||.||||||||||||.||||||||.|||||.|.|||.|||||.|||.|
BL00955___bio      1 ATGAAGGGTTTTTTTGTAACGGGAACAGATACGGGAGTCGGGAAGACGTT     50

BSNT_04399___     51 TATATCCAGCGGTCTTGCTGCTTTATTGAAAGAACATAATAGAGATGTTG    100
                     |||..|..||||||||||.||||||.|||||||.||..||..||||||.|
BL00955___bio     51 TATCGCTTGCGGTCTTGCCGCTTTACTGAAAGAGCAGCATGTAGATGTCG    100

BSNT_04399___    101 GGGTGTATAAACCATTTTTAAGCGG-GATATCACGCCATC-ATCCAGATA    148
                     |.||||.|||.||.|||||.||||| |  |.|.|||.|.| ||||..|.|
BL00955___bio    101 GCGTGTTTAAGCCGTTTTTGAGCGGCG--AGCTCGCTAGCGATCCGCAGA    148

BSNT_04399___    149 GTGATACTAG-TCTGCTGAAAG-ACATGTCGCAGACCAGTCTTTCTCATG    196
                     ||||||| || ||| .|.|||| |||||||..|.||...||||.||.|||
BL00955___bio    149 GTGATAC-AGCTCT-TTTAAAGAACATGTCTGAAACGCCTCTTACTGATG    196

BSNT_04399___    197 AAGACATTACGCCTTTTGCCTTCAAGGCGCCGCTTGCACCATACGTTGCA    246
                     ||||..|||||||||||...||.||.|.||||||||||||||||...||.
BL00955___bio    197 AAGAGGTTACGCCTTTTATTTTTAAAGAGCCGCTTGCACCATACACAGCT    246

BSNT_04399___    247 GGGAAACTTGAGGGAAAGACTGTCACCATGGAAGAGGTTTTAAGCCATTG    296
                     |.|||.||.||.||.|.|||.|||....|||||||.|...|.|.||||||
BL00955___bio    247 GCGAAGCTCGAAGGGAGGACAGTCGGGCTGGAAGATGCCGTGAACCATTG    296

BSNT_04399___    297 GGGGCGGATTAGAGAAAAA-------CATGAATGCTTCATCGTAGAAGGT    339
                     |       ..|.|||.|||       ||.||.|||||||||||.|||||.
BL00955___bio    297 G-------AAAAAGATAAAGGATCGGCACGAGTGCTTCATCGTTGAAGGG    339

BSNT_04399___    340 GCGGGCGGTATTTCTGTGCCATTGGGAGAGGACTATTTGGTCAGTCATGT    389
                     ||.|||||.|||.|||||||..|.||.|||||.|||||.|||||..|..|
BL00955___bio    340 GCAGGCGGAATTGCTGTGCCGCTCGGGGAGGATTATTTCGTCAGCGACTT    389

BSNT_04399___    390 CATAAAAGCG------TTGCAG--CTTCCCATGATTATTGTGGCGCGTCC    431
                     .||.||||||      ||||.|  |.||        ||||||||||||||
BL00955___bio    390 GATCAAAGCGCTCGATTTGCCGGCCGTC--------ATTGTGGCGCGTCC    431

BSNT_04399___    432 TCACCTTGGAACCATTAATCATACCTTTTTAACTGTCAAATATGCAGAAA    481
                     ..|.||.|||||.||.||.|||||.|.||||||.|.|.||||.|||.||.
BL00955___bio    432 CAATCTCGGAACGATCAACCATACGTATTTAACCGCCCAATACGCAAAAC    481

BSNT_04399___    482 GCATGGGGCTTCCAATTGC-----CGGAATTATCATCAATGGAATCA---    523
                     ..||||||.|.|     ||     |||.||..|.|||||.||.||||   
BL00955___bio    482 AAATGGGGATAC-----GCGTGATCGGCATCGTGATCAACGGCATCAGCA    526

BSNT_04399___    524 -------GTGACTCTCCTGATGAAGATGAAAAAACCAATCCTGAGATGAT    566
                            |.||||          .||.|||.|.||.|||||.||.|||||
BL00955___bio    527 GCCGGCCGGGACT----------TGACGAACAGACGAATCCGGACATGAT    566

BSNT_04399___    567 TGAGCGCTTATGCGGTGTTCCGATTTTAGGGGTTACGCCAAAGCTTGCCA    616
                     |||..|.||.||||||||.|||.|..|.||.|||||.||.|||||||...
BL00955___bio    567 TGAAAGATTTTGCGGTGTGCCGCTCCTCGGCGTTACACCGAAGCTTGAAG    616

BSNT_04399___    617 ACG--TTACGAA-AGAAACGGTTCTACATATGGTAAAAGACCATATCAAT    663
                     |||  |.||.|| |.|||   |||..||.|||.|.||.||.|||.||.||
BL00955___bio    617 ACGCTTCACCAACACAAA---TTCACCACATGATCAAGGATCATGTCGAT    663

BSNT_04399___    664 CTATCATTACTGATGAAT------CAAATGGGGG------TATGA    696
                     .|.||.||..|.||||||      ||||||||||      .||||
BL00955___bio    664 GTTTCCTTGATTATGAATCAAATGCAAATGGGGGCAGAAAAATGA    708


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