Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05912 and BL00952

See Amino acid alignment / Visit BSNT_05912 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05912___yxlH.1.5803.seq
#    -bsequence dna-align/BL00952___yxlH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05912___yxlH-BL00952___yxlH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05912___yxlH-BL00952___yxlH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05912___yxlH
# 2: BL00952___yxlH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1418
# Identity:     806/1418 (56.8%)
# Similarity:   806/1418 (56.8%)
# Gaps:         379/1418 (26.7%)
# Score: 2126.0
# 
#
#=======================================

BSNT_05912___      1 ATGG------AATTACAGCAGGACTTGATTCCTC-----AGAAAAAAACA     39
                     ||||      ||..|||          |.||.||     |||||||.| |
BL00952___yxl      1 ATGGAGCGGCAAAAACA----------AATCGTCTATGAAGAAAAACA-A     39

BSNT_05912___     40 ATCGGCGCCTT-------AGATCACGCCGT----TTTTTT---ATGCATG     75
                     ||       ||       ||||||     |    |.||||   .|||  .
BL00952___yxl     40 AT-------TTTAAGGAAAGATCA-----TATGATCTTTTGGGGTGC--C     75

BSNT_05912___     76 GTATTTTGTTTCTGGTTTTCAGGC----TATATTTACGTTCCTGTATTCA    121
                     ||.|||||||||||||||    ||    ||.||.||.||.|||||.|||.
BL00952___yxl     76 GTCTTTTGTTTCTGGTTT----GCTACATACATCTATGTCCCTGTTTTCG    121

BSNT_05912___    122 GTCTGTATTTGGA-------GGATCTGCACTTTTCATATGGCGCAATCGG    164
                     |..|.|||||.||       |||       |||||||||...||.||.||
BL00952___yxl    122 GATTATATTTAGACAACATCGGA-------TTTTCATATTCAGCGATAGG    164

BSNT_05912___    165 CATCATTCTCGGCAGCTACGGGGTCACGCAAATCCTTCTGCGATTCCCGC    214
                     .|||.|.||.||.||||||||.|||||.||.||..|.|||||.||.|||.
BL00952___yxl    165 AATCGTACTTGGAAGCTACGGCGTCACTCAGATATTACTGCGTTTTCCGT    214

BSNT_05912___    215 TCGGCCTTTTGTCAGACATCCTGTTTTCCTTGCGC--------AAGCAAT    256
                     |||||.|..||||.||     ||||   |||.|||        ||.||..
BL00952___yxl    215 TCGGCATCCTGTCTGA-----TGTT---CTTTCGCCGCTTAGAAAACAGC    256

BSNT_05912___    257 TGTTAATTGCCGGGTTCGGCTTT--------TCCGTCCTCAGCAGCCTGC    298
                     ||||.||   |.|   |||||||        ||.||  |.|||.| ||||
BL00952___yxl    257 TGTTGAT---CAG---CGGCTTTGCAATGTCTCTGT--TGAGCTG-CTGC    297

BSNT_05912___    299 -TTTTTCTGATGTTTGATTCTTTCTTCTTCGTGCTGGCCGCCCGGCTTTT    347
                      |.||||||.|||..|||||.|||.||.|.|||.|..|.|||.||||..|
BL00952___yxl    298 ATATTTCTGTTGTCCGATTCGTTCATCATGGTGATCACAGCCAGGCTGCT    347

BSNT_05912___    348 CGCGGGAATCACTGCTTCTACGTGGGTGATGGCGACCATTTTATACGCAC    397
                     |||.||.||.||.||..|.|.||||||||||||.|||.||||||||.|.|
BL00952___yxl    348 CGCCGGTATGACCGCGGCGATGTGGGTGATGGCAACCGTTTTATACTCGC    397

BSNT_05912___    398 ATTATTT--CAACA-ATGGCAATGCATCAAAAGCAATGGGCATCATGCAG    444
                     |.|||||  |||.| ||  |||| ||||||||||.|||||||||.|||||
BL00952___yxl    398 AGTATTTTACAAAAGAT--CAAT-CATCAAAAGCGATGGGCATCCTGCAG    444

BSNT_05912___    445 TTTTTTACCGTCATGCCTCAGTTTGCCAGCATTGTGTTCTGCGG---GCT    491
                     |||||.||.|||.|.||.||.||...||||||.|...||.||||   .||
BL00952___yxl    445 TTTTTAACGGTCCTTCCCCAATTCATCAGCATGGCAGTCAGCGGCTACCT    494

BSNT_05912___    492 CGCCGCAGCCCATTTAGGGAGGCAGG----TTCCTTTTTGGATGGCGCTG    537
                     |      |.|||||| |...|||.||    ||||.||||||||  ||.||
BL00952___yxl    495 C------GTCCATTT-GTTCGGCTGGATGTTTCCGTTTTGGAT--CGGTG    535

BSNT_05912___    538 GCAGCTTCTGCCGCA---------GGTCTGGTGATCTGCTGCTTT---AT    575
                            .|||||.|         ||.|||.|  |||| |..|||   ||
BL00952___yxl    536 -------TTGCCGTATCATGCATCGGACTGAT--TCTG-TCATTTTACAT    575

BSNT_05912___    576 TCAGGAT--CCGTCTGCTCCTCCCGCAAACCG----------TGGCACCA    613
                     |.|.|||  |.|.|       |||||.|..||          ||||    
BL00952___yxl    576 TAAAGATAACGGGC-------CCCGCCATACGGCCAAGGGGATGGC----    614

BSNT_05912___    614 TTCGTGTCAATCAGTACATCAAAGATACATTGCGGCTGCC-------AAA    656
                     ||  |||||  .|.||..|.|||.|.||.|||||.||.||       |||
BL00952___yxl    615 TT--TGTCA--GACTATGTTAAACAGACGTTGCGTCTTCCTGATTTAAAA    660

BSNT_05912___    657 GCTGAAGCTTTTCACC---ATCCTGTCTATGACGGCCCATGCCGTATTAT    703
                     || ||    ||.||.|   |||.|.|.||     |||||.||.|||.|||
BL00952___yxl    661 GC-GA----TTACAACATTATCGTTTTTA-----GCCCACGCTGTACTAT    700

BSNT_05912___    704 TTATCACAGTGTTTGGTTTTACGCCGCTTTAC-ATGAATCAGCTCGGAAT    752
                     ||||.||.|||||.||.|||||||||.||||| ..||||| |.|||||||
BL00952___yxl    701 TTATGACCGTGTTCGGATTTACGCCGATTTACGCGGAATC-GGTCGGAAT    749

BSNT_05912___    753 GGGCGACGCG---GAGCTTCTTTGGGTGATGAGCGCCTTTTTCCT--CCC    797
                        |||.|.|   .||||..|||||||.|||..|||||||||..|  |.|
BL00952___yxl    750 ---CGATGAGAAACAGCTGATTTGGGTTATGTTCGCCTTTTTTGTTCCGC    796

BSNT_05912___    798 ACACGCAGCCGCCACATTAAGCTT---TGTGCT---TCTGCGTTTTACAA    841
                     |.||||.|            ||||   ||||.|   ||    ||||||||
BL00952___yxl    797 AAACGCTG------------GCTTCCGTGTGGTGTATC----TTTTACAA    830

BSNT_05912___    842 ----------GCCG---------TATCGCTTACTT-CGTGAT----GCTC    867
                               ||||         |||.|.|..||| .|||||    ||| 
BL00952___yxl    831 AGTAAAGGCCGCCGATGCACTGATATGGATATCTTATGTGATAACGGCT-    879

BSNT_05912___    868 ATTAGTTTCGCTGTCACCGGGGTCTGTTTGCTATACGTTCCTTTTTCAGC    917
                         ||||              ||| |||||| |.| |.||.|||   ||
BL00952___yxl    880 ----GTTT--------------TCT-TTTGCT-TGC-TGCCGTTT---GC    905

BSNT_05912___    918 TG----CATTGTTCACGGTTTGCATCACACACGCCTGT-ATCGGACTGGC    962
                     .|    |.|| |||.||||.||.|||...|||||| || |..||||||.|
BL00952___yxl    906 CGAAACCCTT-TTCGCGGTATGTATCGTCCACGCC-GTGACAGGACTGAC    953

BSNT_05912___    963 GCTCGGCTTCGTTTTTCCTCTGCTGCTAAGCCATGTCGTCGAAATCAG--   1010
                     ..|.||.||..|||||||.||..||.|.|||.|.|||||     ||||  
BL00952___yxl    954 ATTGGGATTTATTTTTCCGCTTTTGGTCAGCAAAGTCGT-----TCAGCT    998

BSNT_05912___   1011 --------TTCTGCCCGTTTAAAAATGTCAGTGATGGGGTTTTATCAATC   1052
                             .||.||     |.||||||||.||||||||.||.||||||||
BL00952___yxl    999 TGGTACGCCTCAGC-----TCAAAATGTCTGTGATGGGTTTCTATCAATC   1043

BSNT_05912___   1053 ATTTTATGCGCTAGGCATCTTCCTCGGGCCCCTTCTTGCCGGAAAAATCG   1102
                     .|||||||||||.||..|.||.|||||.||..||.|.||.||||||.|.|
BL00952___yxl   1044 TTTTTATGCGCTCGGTTTTTTTCTCGGACCGGTTGTGGCGGGAAAAGTGG   1093

BSNT_05912___   1103 CACAGCTTGTCGGGCTTGCGGGAGTTTTTTATGG--AGCCGGGTCTCTGG   1150
                     |..|.||..|||||| |||.|.||.|.||| |||  .|||||..|..||.
BL00952___yxl   1094 CTGAACTGTTCGGGC-TGCCGAAGGTGTTT-TGGTTTGCCGGCGCATTGT   1141

BSNT_05912___   1151 CATTTGCCGC-------------CTTTTTT-------GTGATGCTCG---   1177
                     ||.|.|||||             |||||||       ||    .|||   
BL00952___yxl   1142 CACTGGCCGCTGCATGTATCATGCTTTTTTCCAAACAGT----TTCGTAT   1187

BSNT_05912___   1178 ------CGCA--AAAACG---TAACATGATCAATTAA-------------   1203
                           .|||  ||.|||   ||| ||..||||.||.             
BL00952___yxl   1188 ATTTACAGCAGGAAGACGGGATAA-ATCCTCAAATATCGTTCAGCCGACG   1236

BSNT_05912___   1203 ------------------   1203
                                       
BL00952___yxl   1237 AAGGTCTTCCGTAAGTGA   1254


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.