Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05912 and BL00952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05912___yxlH.1.5803.seq
# -bsequence dna-align/BL00952___yxlH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05912___yxlH-BL00952___yxlH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05912___yxlH-BL00952___yxlH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05912___yxlH
# 2: BL00952___yxlH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1418
# Identity: 806/1418 (56.8%)
# Similarity: 806/1418 (56.8%)
# Gaps: 379/1418 (26.7%)
# Score: 2126.0
#
#
#=======================================
BSNT_05912___ 1 ATGG------AATTACAGCAGGACTTGATTCCTC-----AGAAAAAAACA 39
|||| ||..||| |.||.|| |||||||.| |
BL00952___yxl 1 ATGGAGCGGCAAAAACA----------AATCGTCTATGAAGAAAAACA-A 39
BSNT_05912___ 40 ATCGGCGCCTT-------AGATCACGCCGT----TTTTTT---ATGCATG 75
|| || |||||| | |.|||| .||| .
BL00952___yxl 40 AT-------TTTAAGGAAAGATCA-----TATGATCTTTTGGGGTGC--C 75
BSNT_05912___ 76 GTATTTTGTTTCTGGTTTTCAGGC----TATATTTACGTTCCTGTATTCA 121
||.||||||||||||||| || ||.||.||.||.|||||.|||.
BL00952___yxl 76 GTCTTTTGTTTCTGGTTT----GCTACATACATCTATGTCCCTGTTTTCG 121
BSNT_05912___ 122 GTCTGTATTTGGA-------GGATCTGCACTTTTCATATGGCGCAATCGG 164
|..|.|||||.|| ||| |||||||||...||.||.||
BL00952___yxl 122 GATTATATTTAGACAACATCGGA-------TTTTCATATTCAGCGATAGG 164
BSNT_05912___ 165 CATCATTCTCGGCAGCTACGGGGTCACGCAAATCCTTCTGCGATTCCCGC 214
.|||.|.||.||.||||||||.|||||.||.||..|.|||||.||.|||.
BL00952___yxl 165 AATCGTACTTGGAAGCTACGGCGTCACTCAGATATTACTGCGTTTTCCGT 214
BSNT_05912___ 215 TCGGCCTTTTGTCAGACATCCTGTTTTCCTTGCGC--------AAGCAAT 256
|||||.|..||||.|| |||| |||.||| ||.||..
BL00952___yxl 215 TCGGCATCCTGTCTGA-----TGTT---CTTTCGCCGCTTAGAAAACAGC 256
BSNT_05912___ 257 TGTTAATTGCCGGGTTCGGCTTT--------TCCGTCCTCAGCAGCCTGC 298
||||.|| |.| ||||||| ||.|| |.|||.| ||||
BL00952___yxl 257 TGTTGAT---CAG---CGGCTTTGCAATGTCTCTGT--TGAGCTG-CTGC 297
BSNT_05912___ 299 -TTTTTCTGATGTTTGATTCTTTCTTCTTCGTGCTGGCCGCCCGGCTTTT 347
|.||||||.|||..|||||.|||.||.|.|||.|..|.|||.||||..|
BL00952___yxl 298 ATATTTCTGTTGTCCGATTCGTTCATCATGGTGATCACAGCCAGGCTGCT 347
BSNT_05912___ 348 CGCGGGAATCACTGCTTCTACGTGGGTGATGGCGACCATTTTATACGCAC 397
|||.||.||.||.||..|.|.||||||||||||.|||.||||||||.|.|
BL00952___yxl 348 CGCCGGTATGACCGCGGCGATGTGGGTGATGGCAACCGTTTTATACTCGC 397
BSNT_05912___ 398 ATTATTT--CAACA-ATGGCAATGCATCAAAAGCAATGGGCATCATGCAG 444
|.||||| |||.| || |||| ||||||||||.|||||||||.|||||
BL00952___yxl 398 AGTATTTTACAAAAGAT--CAAT-CATCAAAAGCGATGGGCATCCTGCAG 444
BSNT_05912___ 445 TTTTTTACCGTCATGCCTCAGTTTGCCAGCATTGTGTTCTGCGG---GCT 491
|||||.||.|||.|.||.||.||...||||||.|...||.|||| .||
BL00952___yxl 445 TTTTTAACGGTCCTTCCCCAATTCATCAGCATGGCAGTCAGCGGCTACCT 494
BSNT_05912___ 492 CGCCGCAGCCCATTTAGGGAGGCAGG----TTCCTTTTTGGATGGCGCTG 537
| |.|||||| |...|||.|| ||||.|||||||| ||.||
BL00952___yxl 495 C------GTCCATTT-GTTCGGCTGGATGTTTCCGTTTTGGAT--CGGTG 535
BSNT_05912___ 538 GCAGCTTCTGCCGCA---------GGTCTGGTGATCTGCTGCTTT---AT 575
.|||||.| ||.|||.| |||| |..||| ||
BL00952___yxl 536 -------TTGCCGTATCATGCATCGGACTGAT--TCTG-TCATTTTACAT 575
BSNT_05912___ 576 TCAGGAT--CCGTCTGCTCCTCCCGCAAACCG----------TGGCACCA 613
|.|.||| |.|.| |||||.|..|| ||||
BL00952___yxl 576 TAAAGATAACGGGC-------CCCGCCATACGGCCAAGGGGATGGC---- 614
BSNT_05912___ 614 TTCGTGTCAATCAGTACATCAAAGATACATTGCGGCTGCC-------AAA 656
|| ||||| .|.||..|.|||.|.||.|||||.||.|| |||
BL00952___yxl 615 TT--TGTCA--GACTATGTTAAACAGACGTTGCGTCTTCCTGATTTAAAA 660
BSNT_05912___ 657 GCTGAAGCTTTTCACC---ATCCTGTCTATGACGGCCCATGCCGTATTAT 703
|| || ||.||.| |||.|.|.|| |||||.||.|||.|||
BL00952___yxl 661 GC-GA----TTACAACATTATCGTTTTTA-----GCCCACGCTGTACTAT 700
BSNT_05912___ 704 TTATCACAGTGTTTGGTTTTACGCCGCTTTAC-ATGAATCAGCTCGGAAT 752
||||.||.|||||.||.|||||||||.||||| ..||||| |.|||||||
BL00952___yxl 701 TTATGACCGTGTTCGGATTTACGCCGATTTACGCGGAATC-GGTCGGAAT 749
BSNT_05912___ 753 GGGCGACGCG---GAGCTTCTTTGGGTGATGAGCGCCTTTTTCCT--CCC 797
|||.|.| .||||..|||||||.|||..|||||||||..| |.|
BL00952___yxl 750 ---CGATGAGAAACAGCTGATTTGGGTTATGTTCGCCTTTTTTGTTCCGC 796
BSNT_05912___ 798 ACACGCAGCCGCCACATTAAGCTT---TGTGCT---TCTGCGTTTTACAA 841
|.||||.| |||| ||||.| || ||||||||
BL00952___yxl 797 AAACGCTG------------GCTTCCGTGTGGTGTATC----TTTTACAA 830
BSNT_05912___ 842 ----------GCCG---------TATCGCTTACTT-CGTGAT----GCTC 867
|||| |||.|.|..||| .||||| |||
BL00952___yxl 831 AGTAAAGGCCGCCGATGCACTGATATGGATATCTTATGTGATAACGGCT- 879
BSNT_05912___ 868 ATTAGTTTCGCTGTCACCGGGGTCTGTTTGCTATACGTTCCTTTTTCAGC 917
|||| ||| |||||| |.| |.||.||| ||
BL00952___yxl 880 ----GTTT--------------TCT-TTTGCT-TGC-TGCCGTTT---GC 905
BSNT_05912___ 918 TG----CATTGTTCACGGTTTGCATCACACACGCCTGT-ATCGGACTGGC 962
.| |.|| |||.||||.||.|||...|||||| || |..||||||.|
BL00952___yxl 906 CGAAACCCTT-TTCGCGGTATGTATCGTCCACGCC-GTGACAGGACTGAC 953
BSNT_05912___ 963 GCTCGGCTTCGTTTTTCCTCTGCTGCTAAGCCATGTCGTCGAAATCAG-- 1010
..|.||.||..|||||||.||..||.|.|||.|.||||| ||||
BL00952___yxl 954 ATTGGGATTTATTTTTCCGCTTTTGGTCAGCAAAGTCGT-----TCAGCT 998
BSNT_05912___ 1011 --------TTCTGCCCGTTTAAAAATGTCAGTGATGGGGTTTTATCAATC 1052
.||.|| |.||||||||.||||||||.||.||||||||
BL00952___yxl 999 TGGTACGCCTCAGC-----TCAAAATGTCTGTGATGGGTTTCTATCAATC 1043
BSNT_05912___ 1053 ATTTTATGCGCTAGGCATCTTCCTCGGGCCCCTTCTTGCCGGAAAAATCG 1102
.|||||||||||.||..|.||.|||||.||..||.|.||.||||||.|.|
BL00952___yxl 1044 TTTTTATGCGCTCGGTTTTTTTCTCGGACCGGTTGTGGCGGGAAAAGTGG 1093
BSNT_05912___ 1103 CACAGCTTGTCGGGCTTGCGGGAGTTTTTTATGG--AGCCGGGTCTCTGG 1150
|..|.||..|||||| |||.|.||.|.||| ||| .|||||..|..||.
BL00952___yxl 1094 CTGAACTGTTCGGGC-TGCCGAAGGTGTTT-TGGTTTGCCGGCGCATTGT 1141
BSNT_05912___ 1151 CATTTGCCGC-------------CTTTTTT-------GTGATGCTCG--- 1177
||.|.||||| ||||||| || .|||
BL00952___yxl 1142 CACTGGCCGCTGCATGTATCATGCTTTTTTCCAAACAGT----TTCGTAT 1187
BSNT_05912___ 1178 ------CGCA--AAAACG---TAACATGATCAATTAA------------- 1203
.||| ||.||| ||| ||..||||.||.
BL00952___yxl 1188 ATTTACAGCAGGAAGACGGGATAA-ATCCTCAAATATCGTTCAGCCGACG 1236
BSNT_05912___ 1203 ------------------ 1203
BL00952___yxl 1237 AAGGTCTTCCGTAAGTGA 1254
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