Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05820 and BL00946

See Amino acid alignment / Visit BSNT_05820 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05820___ywcJ.1.5803.seq
#    -bsequence dna-align/BL00946___ywcJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05820___ywcJ-BL00946___ywcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05820___ywcJ-BL00946___ywcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05820___ywcJ
# 2: BL00946___ywcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity:     551/831 (66.3%)
# Similarity:   551/831 (66.3%)
# Gaps:         102/831 (12.3%)
# Score: 1688.0
# 
#
#=======================================

BSNT_05820___      1 ATGGAAACTCAAGCA-TTG--CAAAAGGTTGAACAGTATGCTTTGAAAAA     47
                     ||||||.||.||.|| |||  |.|   ||.|||.||..||||||.|||||
BL00946___ywc      1 ATGGAATCTAAATCACTTGTTCTA---GTCGAAGAGCTTGCTTTAAAAAA     47

BSNT_05820___     48 ACAAAACATATTCGCTTCAAGCAAA-----ATCCGTTATGTGCTTCGGTC     92
                     .||||.|||     |||...|||||     .|.||.|||.|..|.|||.|
BL00946___ywc     48 GCAAAGCAT-----CTTTGTGCAAAGCCCGCTTCGCTATCTTTTACGGGC     92

BSNT_05820___     93 CATTTTGGCCAGTATGTTTATTGGTTTTGG---CATTACAGCCGCAAG--    137
                     .||..||||||||||||||||.||.||.||   ||||..|||     |  
BL00946___ywc     93 TATGCTGGCCAGTATGTTTATCGGGTTCGGAGTCATTGTAGC-----GTT    137

BSNT_05820___    138 CAAAACAGGCAGCTATTTC-TTTATGGCTG---ATTCTCCGTTTGCCTTT    183
                     .|||||.||.|   ||.|| ||||| |.||   ||||||||||..|.|.|
BL00946___ywc    138 TAAAACGGGGA---ATCTCTTTTAT-GTTGAACATTCTCCGTTCACATAT    183

BSNT_05820___    184 CCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGCTGATTGCTTACGG    233
                     ||....||.||..||||.||.||||.|||.|||.|.|||||.|..||.||
BL00946___ywc    184 CCAATTGCAGCAATCACCTTTGGGGGCGCCATTATTCTGATCGTCTATGG    233

BSNT_05820___    234 AGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGC    283
                     .||.||||||||||||||.||.||.||.|||||||..||.|...|.||||
BL00946___ywc    234 CGGAGGAGATTTATTTACGGGAAATACATTTTATTATACATTGGCTGCGC    283

BSNT_05820___    284 TCCGGAAAAAACTCAGCTGGCGCAACACCCTGT-----ACTTGTGGATGT    328
                     |.||.||||||.|..||||||.||     ||||     |..|||||||||
BL00946___ywc    284 TTCGTAAAAAAATGCGCTGGCCCA-----CTGTGATCAAGCTGTGGATGT    328

BSNT_05820___    329 CAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATC    378
                     ..||||||||.||.||||||||.||||||.||.|.||.||...|||.|||
BL00946___ywc    329 TCAGCTATGCAGGAAATTTAATGGGCGCCGTTTTTTTCGCAGGCCTCATC    378

BSNT_05820___    379 AGCGCGACGGGACTT-TTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTC    427
                     ...|||||.|| ||| |||.|.||.|||||| |.||  ||...||.||||
BL00946___ywc    379 TTTGCGACCGG-CTTATTTAAAGATCCTTCT-TCCA--CCGGCTTTATTC    424

BSNT_05820___    428 ATT-----TGGCAGAGCACAAAATGGAACCGCCGGCTTCCGAATTGTTTT    472
                       |     ||||.|||||.||||||.|..||||||...||||||||||.|
BL00946___ywc    425 --TCAGCGTGGCGGAGCATAAAATGAATACGCCGGTGACCGAATTGTTCT    472

BSNT_05820___    473 TCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCA    522
                     |.|.||..||.|||||.||.||||||||.|||||.||.||||||.||||.
BL00946___ywc    473 TTAAAGCGATTCTGTGTAACTGGCTTGTCTGCCTTGCGTTTTTCGTTCCG    522

BSNT_05820___    523 ATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTATTCG-    571
                     |||.|.|..||||||||.|||||.||..|.||..|.||||||||.||.| 
BL00946___ywc    523 ATGGCGCAAAAAGGGGACGGAGCGAAAATGTTCTCTATGATGCTGTTTGT    572

BSNT_05820___    572 -TTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTG    620
                      |||.||  ||||||||||||||.|.||||||||||||.||.||.|||..
BL00946___ywc    573 CTTTACT--TTCTTTATTTCCGGTTATGAACACAGCATCGCGAACATGGC    620

BSNT_05820___    621 CACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACT--    668
                     |||.||.|||.||||.||..|.|.||||||.||.||.||     ||.|  
BL00946___ywc    621 CACTTTTGCCGTCTCTCTGGTCACCGAGCATCCGGAGAC-----CATTTC    665

BSNT_05820___    669 GAT---GGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGA    715
                     |||   .||.|||.||...|||.||||.||.||.||.|||||.||.|||.
BL00946___ywc    666 GATTGCAGGCGCAATCCATAACCTAATTCCGGTAACACTCGGGAACCTGG    715

BSNT_05820___    716 CC----GCGGGAATAGTTATGATGGGCTGGATGTACTAC-------ACA-    753
                     .|    |||.|    .||||||||||||..||||||.||       ||| 
BL00946___ywc    716 TCGGAGGCGCG----TTTATGATGGGCTTCATGTACCACTATGCCAACAA    761

BSNT_05820___    754 --------CTG----AATCCTGATC-AATAA    771
                             .||    ||||   ||| |||||
BL00946___ywc    762 GCCGGGCGGTGAAGAAATC---ATCAAATAA    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05820 and BL00946

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
