Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05913 and BL00943

See Amino acid alignment / Visit BSNT_05913 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05913___yxlG.1.5803.seq
#    -bsequence dna-align/BL00943___yxlG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05913___yxlG-BL00943___yxlG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05913___yxlG-BL00943___yxlG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05913___yxlG
# 2: BL00943___yxlG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity:     490/906 (54.1%)
# Similarity:   490/906 (54.1%)
# Gaps:         258/906 (28.5%)
# Score: 1133.0
# 
#
#=======================================

BSNT_05913___      1 ATGAAGGTGA----TGATGGCGCTATTGCAGAAGGAGTGGCTGGAAGGAT     46
                     ||||| .|.|    |.||   |.||||.||.||.||.|||..||||.|||
BL00943___yxl      1 ATGAA-TTCATTTTTTAT---GTTATTTCAAAAAGAATGGACGGAAAGAT     46

BSNT_05913___     47 GGAAAAGCGGCAAGCTGATTTGGCTGCCGATTGCGATGATGATCGT--CG     94
                     |||.|..|||.||||||.||||||||||   ||..||..|||||.|  .|
BL00943___yxl     47 GGAGAGACGGAAAGCTGCTTTGGCTGCC---TGTCATTTTGATCCTTCTG     93

BSNT_05913___     95 GGC-TGACACAGCCGCTGACCATTTATTATATGCCGGAAATCATCGCACA    143
                     ||| |||..||||||||.|.|.|.|||||||||||..||||.|||| |.|
BL00943___yxl     94 GGCTTGATTCAGCCGCTCAGCCTGTATTATATGCCTCAAATTATCG-ATA    142

BSNT_05913___    144 TGG-AGGGAACCTTCCTGACGGCATGAAAATCAGTTTTACGAT-GCCCT-    190
                     ||| .|||||..|.|||||.||       |||.||     ||| |.|.| 
BL00943___yxl    143 TGGCCGGGAATTTGCCTGAGGG-------ATCCGT-----GATCGACATA    180

BSNT_05913___    191 ------CCG---GGTCTGAA---GTGATGGTCAGCACGCTT-TCTCAATT    227
                           |||   ||  ||||   ||.||||..||||| ||| ||.||.||
BL00943___yxl    181 CCAAGGCCGAGAGG--TGAAGAGGTAATGGCGAGCAC-CTTGTCCCAGTT    227

BSNT_05913___    228 CAACACGCTTGGCATGGCTCTGGTCATCTTTAGCGTGATGGGCAGTGTAG    277
                     |..||||.||||.|.|||..|..||.|.||.||.|||||||||||..|.|
BL00943___yxl    228 CGGCACGGTTGGTACGGCAATTTTCGTTTTCAGTGTGATGGGCAGCATTG    277

BSNT_05913___    278 CCAATGAAAGAAATCAAGGGGTAACAGCGC------TGATTATGTCGCGG    321
                     .|.|.|||.||||.|||||      |.|.|      ||.|.|||.||.|.
BL00943___yxl    278 TCCACGAACGAAACCAAGG------ATCCCTTTCATTGGTGATGGCGAGA    321

BSNT_05913___    322 CCTGTGACGGCAGCC-----CATTATATCGTGAGTAAATGGCTCATCCAA    366
                     |||||     |||||     ||.|||||||..||.||.|||||  ||   
BL00943___yxl    322 CCTGT-----CAGCCCGCTTCAGTATATCGGCAGCAAGTGGCT--TC---    361

BSNT_05913___    367 AGC--GTG--------ATCGGCATTATGTCGTTTGCAGCTGGATACG---    403
                     |||  |||        ||.||     |.||||||||.||..|.||||   
BL00943___yxl    362 AGCAGGTGCTGCTCGTATTGG-----TTTCGTTTGCTGCAAGCTACGGTT    406

BSNT_05913___    404 -GGCTTGCTTACTAT-----TACGTCCGGCTGCTGTTTG---AGGACGCA    444
                      |||||.| ||||||     |        |||||.||.|   |||..|.|
BL00943___yxl    407 TGGCTTTC-TACTATACAAAT--------CTGCTATTCGGCAAGGTTGAA    447

BSNT_05913___    445 TCATTCAGCCGCTTTGCCGCAAGCCTTGGCCTTTA-------CGCG----    483
                     |  ||.| |||.|||          ||   .||||       ||.|    
BL00943___yxl    448 T--TTGA-CCGGTTT----------TT---ATTTAGTTTATCCGTGTACA    481

BSNT_05913___    484 --CTTTGGGTGATATTTAT--TGTGACCGCCGGCCTTGCCGGAAGTACGA    529
                       .|.|||.|.||||||.|  |||      |||.|           ||||
BL00943___yxl    482 GTATATGGATTATATTTGTCATGT------CGGTC-----------ACGA    514

BSNT_05913___    530 TATT-----CCGGTCTG----------TCGGAGCAGCTGCGGCTTGCGGG    564
                     |.||     ..|.||||          ||||       |.||.||||.||
BL00943___yxl    515 TGTTTTTCAGTGCTCTGTTTCGCCATATCGG-------GGGGATTGCCGG    557

BSNT_05913___    565 -------ATCGGGCTCACAGCAGCCGTTTCCTTTGTTGTTTCATTATTT-    606
                            |||.|..|||..||...||||||.||.|..|..||.|||||| 
BL00943___yxl    558 CATGAGCATCTGTTTCATCGCCTTCGTTTCATTGGCGGGATCCTTATTTC    607

BSNT_05913___    607 CCAGATGGTGCGAAGTGGCTTCCGGCTGAGATTTGC---AAG-CAGGCGG    652
                     ||.|.|....|||| |||.|.||.|.|.||    ||   ||| |||||.|
BL00943___yxl    608 CCCGCTTTACCGAA-TGGATGCCTGATAAG----GCGAAAAGCCAGGCTG    652

BSNT_05913___    653 AGCA---TATCCTTC----TTCATGGAGAGCGGGCAGATTTTTTC----G    691
                     |..|   ||||.|.|    ||||||| ||.|      ||..||||    |
BL00943___yxl    653 ATTATTTTATCATGCACGGTTCATGG-GACC------ATGCTTTCGGCTG    695

BSNT_05913___    692 GATGGTCACTCACTTTCTCCATT-----CTGTACATCATGCTTCTGGCCG    736
                     ||||||     ..||||..|.||     .||||    ||.|||.||..|.
BL00943___yxl    696 GATGGT-----GTTTTCGTCTTTGGGAATTGTA----ATTCTTTTGTTCA    736

BSNT_05913___    737 TGT------TTTCTGTGTGGCGCTTCCGGCGGTATGAAAGCTATTAA---    777
                     |||      |||.|||               .|.|.||||.|||.||   
BL00943___yxl    737 TGTGCACCGTTTTTGT---------------TTTTAAAAGATATGAATCT    771

BSNT_05913___    777 ------    777
                           
BL00943___yxl    772 TACTAA    777


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