Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05922 and BL00940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05922___sigY.1.5803.seq
# -bsequence dna-align/BL00940___sigY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05922___sigY-BL00940___sigY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05922___sigY-BL00940___sigY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05922___sigY
# 2: BL00940___sigY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity: 365/576 (63.4%)
# Similarity: 365/576 (63.4%)
# Gaps: 81/576 (14.1%)
# Score: 1000.5
#
#
#=======================================
BSNT_05922___ 1 TTGGATACACAAG---------AAGAACAGCGGCTGATACA-GCAGGCGA 40
.||||| |||| ||||| ||||| || .|.|||.|
BL00940___sig 1 GTGGAT---CAAGCAGATGAAAAAGAA------CTGAT-CATACGGGCAA 40
BSNT_05922___ 41 AAGAGGGAAACGACGAGGCGTTTAC-AGCCCTTTTCCACTATCACTATTC 89
||||.||..|.||.|.|||.||||| |..|..||||..|| |||.||..|
BL00940___sig 41 AAGACGGTGAAGATGCGGCTTTTACGAAACTGTTTCAGCT-TCATTACCC 89
BSNT_05922___ 90 TTTCTTATATAAATACTTGTT---AAAGCTTT--CCCTTCACCCCGATCT 134
.||..|||||.|||| |||| ||| || |.||..||||.|||||
BL00940___sig 90 CTTTGTATATCAATA--TGTTCTGAAA---TTAACGCTGAACCCAGATCT 134
BSNT_05922___ 135 CAGCGAGGAACTT-GTTCAGGAAACCTTTCTGAAAGGGTA---CATCCAT 180
||..|||| |||| ||.||||||||..|.|||||||.||| ||.||
BL00940___sig 135 CACAGAGG-ACTTGGTCCAGGAAACGATGCTGAAAGCGTATGTCAGCC-- 181
BSNT_05922___ 181 TTAAGAAGCTTTCAGGGCCGTTCAAAATTCTCCACGTGGCTGATCTCCAT 230
||.|..|| |||||||||..|.|||||||.||.||.|||||||||||.||
BL00940___sig 182 TTCATCAG-TTTCAGGGCAATGCAAAATTTTCAACATGGCTGATCTCAAT 230
BSNT_05922___ 231 TGCATCGCGGCTCTATCTCGATCA------CCAGAAAAAGAGAAAGAGAG 274
|||.||.|||||.|.|.||||.|| ||.||||| ||.|.||.
BL00940___sig 231 TGCTTCCCGGCTGTTTATCGACCATCAGCGCCGGAAAA----AACGCGAA 276
BSNT_05922___ 275 AATGG--AAACGGAATCAGACAGTTACG-GAGGAAACAATCCGCAAGATC 321
||..| |||||.||.||| ||| | ||||||.|..|.||.||.||.
BL00940___sig 277 AACCGCAAAACGCAAGCAG-CAG----GAGAGGAAGCCTTGCGAAAAATG 321
BSNT_05922___ 322 AAGTGGGA-------CGTGTCGGCGAAAGGGGCA-GAGTGGAGCGAA-AC 362
||.|||.| |.|..|||| || ||.||||||||| ||
BL00940___sig 322 AAATGGAATTCTGCCCTTCACGGC--------CACGAATGGAGCGAATAC 363
BSNT_05922___ 363 GCTCGATCTGTTTTCAAAGCTGGACCCTAAACTGCGCACACCAGTTTTAT 412
.|.||..|||||.|...|||.||.|||.|..|..|.|..|||.|.||.|
BL00940___sig 364 -TTGGAGATGTTTGCTGCGCTTGAGCCTGAGTTCAGAATGCCAATCTTGT 412
BSNT_05922___ 413 TAAGGCATTACTACGGCTATACCTACGCCGAAATCGGGATGATGCTTCAA 462
||||.||.||.|||||.|.|||.|||.|.|||.|.|..|..|||||..||
BL00940___sig 413 TAAGACACTATTACGGGTTTACTTACCCTGAAGTGGCAAACATGCTGAAA 462
BSNT_05922___ 463 ATCAAAGAAGGCACTGTAAAGTCCAGAGTTCATAAAGGGCTCCAGCAAAT 512
||.||||||||.||.||.||.||..|.||.|||.|.||..|..||.||||
BL00940___sig 463 ATAAAAGAAGGTACCGTCAAATCGCGCGTGCATCATGGATTAAAGAAAAT 512
BSNT_05922___ 513 CAGAAAGGAGT-GGGACGATGAATAA 537
..||||||||| |||||..|||
BL00940___sig 513 TCGAAAGGAGTGGGGACAGTGA---- 534
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