Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05930 and BL00925
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05930___cydC.1.5803.seq
# -bsequence dna-align/BL00925___cydC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05930___cydC-BL00925___cydC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05930___cydC-BL00925___cydC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05930___cydC
# 2: BL00925___cydC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1811
# Identity: 1219/1811 (67.3%)
# Similarity: 1219/1811 (67.3%)
# Gaps: 193/1811 (10.7%)
# Score: 3785.0
#
#
#=======================================
BSNT_05930___ 1 ATGGGAAAAGACCTGTTTCGATATAAAGGAATGAAGCGGATTCTCACCTT 50
|||||||||||.||.||.|.|||||||||.|||||.||.|| .|||
BL00925___cyd 1 ATGGGAAAAGATCTTTTGCAATATAAAGGGATGAAACGAAT-----ACTT 45
BSNT_05930___ 51 G-ATTACT---TGTTTAACGCTG------ATTCAGACAGCCGCCATTATT 90
| |.|||| ||| .||| ||.|||...|||||||||||.
BL00925___cyd 46 GCAGTACTCACTGT-----CCTGACATGCATGCAGGGCGCCGCCATTATC 90
BSNT_05930___ 91 ATGCAGGCAGAGTGGCTGAGTGAGGCCTTAACCGGACTGTTCAACGG-GA 139
||||||||.||.|||||...|||.||..|.|||.|.||.||.||||| ||
BL00925___cyd 91 ATGCAGGCCGAATGGCTTGCTGAAGCGGTTACCCGCCTTTTTAACGGAGA 140
BSNT_05930___ 140 AGGGCATTACCTCCCTTTTTCCGGTGATCAGCT--TTTTCCTCATCGCTT 187
| .||.|....||.||.||||||.||.|||.|| |||.||.| |||||
BL00925___cyd 141 A-CGCGTCGGTTCGCTCTTTCCGCTGCTCATCTTATTTACCGC--CGCTT 187
BSNT_05930___ 188 TTATCGCCCGGCACGGGGTGACGGTGGCGCGACAG--AAAA--TCGTCTA 233
||.|....||.||.|..||.|| .|..|.||| |||| |..|.|.
BL00925___cyd 188 TTTTATTTCGACATGCTGTTAC----CCTTGTCAGGCAAAAGCTGATATT 233
BSNT_05930___ 234 TCAATACGCCGCCCGGACAGGAGCAGATTTGAGG-AAAAGTTTTCTTGAT 282
|.|.||.||||||..|||.||.||.|...||.|| ||||||||| |.||.
BL00925___cyd 234 TGACTATGCCGCCGAGACGGGGGCCGGCATGCGGAAAAAGTTTT-TGGAG 282
BSNT_05930___ 283 CAGCTGTTCCGATTAGGCCCCCGCTTTGCAAAGAAAGAAGGGACGGGGCA 332
.||||.||||.||..||||||.|..|.||.|.|||||||||.||.||.||
BL00925___cyd 283 AAGCTTTTCCAATCCGGCCCCAGGCTGGCGAGGAAAGAAGGAACCGGTCA 332
BSNT_05930___ 333 AATGGTGACGCTGGCGATGGAAGGCAT--CAGCCAGTTCCGCCGCTACCT 380
..|.||.|||||.|||||||||||.|| || ||||||||||||||..|
BL00925___cyd 333 TGTCGTCACGCTCGCGATGGAAGGAATTGCA--CAGTTCCGCCGCTATTT 380
BSNT_05930___ 381 GGAGCTGTTTCTGCCGAAAATGGTCAGCATGGCGATTGTGCCTGCGGCAG 430
||||||||||.||||||||||||||||||||||..||.|.||..||||.|
BL00925___cyd 381 GGAGCTGTTTTTGCCGAAAATGGTCAGCATGGCCGTTATACCGCCGGCGG 430
BSNT_05930___ 431 TTGTCATTTATGTGTTTTTTCAGGATCGGACAT---------CAGCCATC 471
|||||..||||||.||||||.|.|| .|||| |||.|.|.
BL00925___cyd 431 TTGTCTGTTATGTCTTTTTTAAAGA---CACATCTTCCGCTGCAGTCTTA 477
BSNT_05930___ 472 AT-TTTAGTCGCTGCTATGCCGATTCTGATCATCTTTATGATTCTTCTCG 520
|| .||| |.|||||||||.|.||||..||||||||.|||||.|
BL00925___cyd 478 ATGATTA-------CGATGCCGATTTTAATCACTTTTATGATCCTTCTTG 520
BSNT_05930___ 521 GCCTTGTCGCGCAGAGAAAAGCGGATCGTCAGTGGAAATCCTATCAGAGA 570
|...||..||..|.|||||||||||..|.||.||||||.|.|||.|||..
BL00925___cyd 521 GGTATGCGGCTAAAAGAAAAGCGGACAGCCAATGGAAAACGTATGAGATG 570
BSNT_05930___ 571 CTTTCCAATCATTTTGTTGATTCTCTT-CGCGGGCTGGAGACATTGCGTT 619
|||||.||.||||||...||||| ||| |||||.|||||.||||||....
BL00925___cyd 571 CTTTCAAACCATTTTACAGATTC-CTTGCGCGGCCTGGAAACATTGAAAG 619
BSNT_05930___ 620 TCCTAGGTTTGAGCAAGTCACACAGCAAAAATAT-TTTCTATGTGAGTGA 668
|.||.||..|.|||...|||||.|..||.||||| |||| |||||||.||
BL00925___cyd 620 TGCTGGGCATCAGCCGTTCACATACTAAGAATATATTTC-ATGTGAGCGA 668
BSNT_05930___ 669 GCGGTATCGCAAGGCAACGATGAGCACACTCCGGGTAGCGTTTTTGTCAT 718
.|||||..|.|||||.||||||||.||.||...|.|.||.|||.||||||
BL00925___cyd 669 ACGGTACAGGAAGGCGACGATGAGTACGCTTAAGATCGCCTTTCTGTCAT 718
BSNT_05930___ 719 CATTCGCCCTCGATTTTTTCACGATGCTGTCGGTGGCGACAGTCGCAGTA 768
|.||.||.||.|||||||||||.||||||||.||.|||||.||.||.||.
BL00925___cyd 719 CGTTTGCACTTGATTTTTTCACCATGCTGTCCGTAGCGACCGTTGCTGTT 768
BSNT_05930___ 769 TTTCTGGGCCTGCGTCTCATTGACGGCGATATTTTGCTTGGCCCCGCT-- 816
|||||.||.||..||||..||||||||...||.|.|||.|..||.|||
BL00925___cyd 769 TTTCTCGGTCTCGGTCTTGTTGACGGCAGCATCTCGCTGGAGCCGGCTCT 818
BSNT_05930___ 817 -----TTAACGGCGCTTATTCTGGCGCCTGAGTATTTTTTGCCGGTGCGG 861
|| ||.|||||.||.|||||||.||||.|.||.||.|||
BL00925___cyd 819 TGCCATT-------CTGATTCTTGCCCCTGAGTTTTTTCTCCCTGTCCGG 861
BSNT_05930___ 862 GAAGTGGGGAATGATTATCATGCAACGCTGAACGGCCAGGAAGCAGGAAA 911
|||||.||.|||||.||||||||.||..|||||||.|..|||||.||.||
BL00925___cyd 862 GAAGTCGGCAATGACTATCATGCTACATTGAACGGACGCGAAGCCGGTAA 911
BSNT_05930___ 912 AACCATTCAA-GAGATTTTG---TCGCAGCCTGGTTTTAAAGAAGAGACG 957
|.|.| |||| |.|||.||| || |||.|||||.||.||.|||.||
BL00925___cyd 912 AGCGA-TCAAGGCGATATTGGATTC---GCCGGGTTTCAAGGATGAGGCG 957
BSNT_05930___ 958 CCGCTTCAG-CTCGAG-GATTGGTC------CGATCAGGAT-GAGCTGAA 998
|| .||.|| ||.||| || ||||| |||||| .|| |||.|.||
BL00925___cyd 958 CC-TTTAAGTCTTGAGCGA-TGGTCTGACGACGATCA-AATCGAGTTCAA 1004
BSNT_05930___ 999 GC-------TGTCAGGCGTG----TCAG----TCGGCCGTT----CGGTG 1029
|| |||..|||.|| |.|| .|.||..|| |||
BL00925___cyd 1005 GCATGTAGATGTGCGGCATGAAGATGAGGAAAACTGCTCTTTATCCGG-- 1052
BSNT_05930___ 1030 TCTGATATTCATCTCTCATTCAAAGGCAAGAAAAAAATCGGCATTATCGG 1079
||| ||| |||.|||||.||.||.||||.|||||||||.||.|||||
BL00925___cyd 1053 ---GAT-TTC-TCTTTCATTTAAGGGAAAGAGAAAAATCGGAATCATCGG 1097
BSNT_05930___ 1080 TGCAAGCGGCGCCGGAAAATCAACATTAATTGATATTCTCGGCGGATTTT 1129
.|.||||||.|||||||||||.||..|.||.|||.|.||||||||.||..
BL00925___cyd 1098 GGAAAGCGGTGCCGGAAAATCTACGCTTATCGATGTGCTCGGCGGCTTCC 1147
BSNT_05930___ 1130 TAGAGCCGGATGGCGGGATGATTGAGGTTAATGGTACAAGCCGG------ 1173
|.||..||.|..|||| .|||| |..|||.|||
BL00925___cyd 1148 TGGAAACGAAAAGCGG---------CGTTA----TCAAAGTCGGGGGAAA 1184
BSNT_05930___ 1174 -------TCCCATTTGCAGGACGG-CAGCTGGCAGAAAAACCTTCTGTAC 1215
.|.|||||||| ||||| |||||||||.||..|.||..||||.
BL00925___cyd 1185 AAAGAGAACGCATTTGCA-GACGGACAGCTGGCAAAATCAGCTCTTGTAT 1233
BSNT_05930___ 1216 ATCCCTCAGCATCCGTACATTTTTGATGATACGCT---TGGCAATAACAT 1262
||.||.||||||||.||.||.|||...|||||||| .|.|||| ||
BL00925___cyd 1234 ATTCCGCAGCATCCCTATATCTTTCCGGATACGCTCGCAGCCAAT---AT 1280
BSNT_05930___ 1263 TCGCTTCTACCACCCAAGCGCTTCGGCAGAGG---------ATACAGCCC 1303
.||.||.||.||.||...||||||.|..||.| |..||||..
BL00925___cyd 1281 CCGTTTTTATCATCCCGCCGCTTCTGACGAAGACGTTGAACAGGCAGCAA 1330
BSNT_05930___ 1304 GTGCTGCTGCGGCGGCGGGACTGGCGGAGCTGGTGGAT-AGCCTTCCTGA 1352
|.||||| |||| ||..||||||||.|.||| || |||||..|
BL00925___cyd 1331 GAGCTGC--------CGGG-CTCTCGGAGCTGATTGATCAG-CTTCCAAA 1370
BSNT_05930___ 1353 AGGATTAGAGGGGCGGATCGGGGAAGGCGGCCGGGCGCTCAGCGGCGGCC 1402
.||.||..|.|.|||||||||.||||||||..||||..|.|||||.||.|
BL00925___cyd 1371 CGGCTTGAAAGAGCGGATCGGTGAAGGCGGGAGGGCATTAAGCGGTGGAC 1420
BSNT_05930___ 1403 AGGCACAGCGTGTCGCGCTGGCCCGCGCCTTTTTGGGAAACCGTCCGATC 1452
||||.||||||...||..|.|||||.||.||..|.||.|||||||||||.
BL00925___cyd 1421 AGGCGCAGCGTACAGCCGTTGCCCGGGCTTTCCTTGGCAACCGTCCGATT 1470
BSNT_05930___ 1453 CTGCTGCTGGATGAGCCGACCGCCCATCTTGATATCGAAACTGAATATGA 1502
.|.||..|.||||||||.||.||.|||.|.|||||||||||.|||||.||
BL00925___cyd 1471 ATTCTTTTAGATGAGCCCACTGCTCATTTGGATATCGAAACAGAATACGA 1520
BSNT_05930___ 1503 AATAAAAGAAACGATGCTGGATTTATTTGAGGATAAGCTCGTTTTTCTCG 1552
..|.|||.||||||||.|..|..|.|||||.||.|||||.||||||.|.|
BL00925___cyd 1521 GTTGAAAAAAACGATGTTAAAACTGTTTGAAGACAAGCTGGTTTTTTTGG 1570
BSNT_05930___ 1553 CGACTCACCGCCTTCACTGGATGCTCGATATGGACGAAATTATCGTGCTG 1602
|.||.||.|||||||||||||||||.||||||||.|||||||||||||||
BL00925___cyd 1571 CAACCCATCGCCTTCACTGGATGCTTGATATGGATGAAATTATCGTGCTG 1620
BSNT_05930___ 1603 GACG-GGGGCAGGGTTGCGGAAGTCGGGACTCA-CAATGAACTGCTGGAG 1650
.|.| .||||| |||.||.|||..|||.||.|| ||| ||||||.| .|
BL00925___cyd 1621 AAAGATGGGCA-GGTGGCTGAAACCGGTACACATCAA-GAACTGAT--TG 1666
BSNT_05930___ 1651 AAAAAC--GGTGTGTATACCAAACTCGTGAAGGCACA----ACTGGGGGA 1694
||||.| ||.||.|||..|.|.|||||||||||.|| ..|||.||
BL00925___cyd 1667 AAAAGCGGGGCGTTTATTACGAGCTCGTGAAGGCGCAGTCGTTTGGAGG- 1715
BSNT_05930___ 1695 AAG-AGCATGA 1704
.| |.|||||
BL00925___cyd 1716 -TGCATCATGA 1725
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