Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05932 and BL00923
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05932___cydA.1.5803.seq
# -bsequence dna-align/BL00923___cydA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05932___cydA-BL00923___cydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05932___cydA-BL00923___cydA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05932___cydA
# 2: BL00923___cydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1445
# Identity: 1076/1445 (74.5%)
# Similarity: 1076/1445 (74.5%)
# Gaps: 76/1445 ( 5.3%)
# Score: 3898.0
#
#
#=======================================
BSNT_05932___ 1 ATGAGT----GAATTGGTATTAGCCCGCATACAATTTGCATCAACAACGT 46
|| |||.|..|.||.||..|..|.||||||||.|||||||||.
BL00923___cyd 1 ----GTGGACGAACTCATTTTGGCAAGATTTCAATTTGCTTCAACAACGA 46
BSNT_05932___ 47 TGTTTCACTTCTTGTTTGTGCCGATGTCTATCGGGCTTGTGTTTATGGTT 96
|.||||||||..|.|||||.||||||||.|||||||||||.|||||||||
BL00923___cyd 47 TCTTTCACTTTATTTTTGTACCGATGTCAATCGGGCTTGTCTTTATGGTT 96
BSNT_05932___ 97 GCGTTGATGGAGACTCTTTATCTTGTAAAGAAAAATGAGCTGTATCTCAA 146
||.||.|||||.||.||||||.|.|.|||||||||.||..|.|| ||.
BL00923___cyd 97 GCTTTAATGGAAACCCTTTATGTCGCAAAGAAAAAAGACATTTA---CAG 143
BSNT_05932___ 147 A---ATGGCAAAGTTTTGGGGACACTTATTCTTAATAAATTTCGCAGTCG 193
| |||||.||.||||||||.||||||||.|||||.|||||.|||||||
BL00923___cyd 144 AACGATGGCTAAATTTTGGGGGCACTTATTTTTAATTAATTTTGCAGTCG 193
BSNT_05932___ 194 GTGTTGTAACGGGGATTTTGCAAGAATTCCAGTTTGGACTGAACTGGTCT 243
|||||||.||.||||||||.||||||||.|||||.|||.||||||||||.
BL00923___cyd 194 GTGTTGTCACCGGGATTTTACAAGAATTTCAGTTCGGAATGAACTGGTCG 243
BSNT_05932___ 244 GATTACTCCCGTTTTGTCGGAGATGTATTTGGCGCTCCCCTTGCGATTGA 293
||.||||||||.||||||||.||||||||.||||||||.||.|||.|.||
BL00923___cyd 244 GAGTACTCCCGCTTTGTCGGTGATGTATTCGGCGCTCCGCTCGCGGTGGA 293
BSNT_05932___ 294 AGCATTATTGGCGTTTTTCATGGAATCTATTTTTATCGGATTATGGATTT 343
|||..|..|.||.||.||.||||||||.|..||||||||.||.|||||.|
BL00923___cyd 294 AGCGCTGCTCGCTTTCTTTATGGAATCGACGTTTATCGGTTTGTGGATCT 343
BSNT_05932___ 344 TTGGCTGGGACCGCCTGCCGAAGAAAATTCA--CGCTCTCTGCATATGGC 391
|.||||||||||||||.||||||||.||||| .|||.|| |||.||||
BL00923___cyd 344 TCGGCTGGGACCGCCTTCCGAAGAAGATTCATTTGCTGTC--CATTTGGC 391
BSNT_05932___ 392 TCGTATCATTCGGAACGATCATGTCATCTTTCTGGATTTTAACAGCAAAC 441
|.||.||..|.||.|||||||||||..|.||.||||||.||.|.||.|||
BL00923___cyd 392 TTGTTTCGCTTGGCACGATCATGTCGGCGTTTTGGATTCTAGCGGCCAAC 441
BSNT_05932___ 442 TCCTTTATGCAGGAGCCGGTCGGTTTTACGATCAAAAACGGCCGCGCGGA 491
||.||||||||||||||.|||||.|||.|||||||||||||.||||||||
BL00923___cyd 442 TCGTTTATGCAGGAGCCTGTCGGATTTGCGATCAAAAACGGACGCGCGGA 491
BSNT_05932___ 492 AATGAATGATTTTGGCGCGTTGATTACAAACCCTCAGCTTTGGGTTGAAT 541
|||||..||||||...|||.|.||||.||||||.|||||.||||||||||
BL00923___cyd 492 AATGACCGATTTTTTTGCGATTATTAAAAACCCGCAGCTATGGGTTGAAT 541
BSNT_05932___ 542 TCCCGCACGTTATTTTCGGTGCGCTTGCCACTGGAGCTTTCTTTATTGCC 591
|.||||||||.|||||||||||||||||||||||.||.||.||.||||||
BL00923___cyd 542 TTCCGCACGTCATTTTCGGTGCGCTTGCCACTGGGGCGTTTTTCATTGCC 591
BSNT_05932___ 592 GGAGTGAGTGCTTTTAAACTGCTGAAGAAAAAAGAAGTGCCGTTCTTTAA 641
||.||.||.||.|.||||.|||||||.|||.|.|||.|||..||.|||||
BL00923___cyd 592 GGTGTCAGCGCGTATAAAATGCTGAAAAAACAGGAATTGCTCTTTTTTAA 641
BSNT_05932___ 642 GCAATCTTTTAAACTCGCAATGATCGTCGGC-CTTTGTGCCGGTCTTGGC 690
..||||.|||.||.||||.|||||.|| ||| |||..|.|||| .|||
BL00923___cyd 642 AAAATCCTTTCAAATCGCGATGATTGT-GGCGCTTGTTTCCGG---GGGC 687
BSNT_05932___ 691 GTCG--GCCTT-AGCGGACACATGCAGGCTGAGCACTTGATGGA-ATCAC 736
|.|| ||.|| ||||||||...||||||..||||..|||||.| |.| |
BL00923___cyd 688 GGCGTTGCGTTCAGCGGACATGAGCAGGCACAGCATCTGATGAAGAGC-C 736
BSNT_05932___ 737 AGCCGATGAAAATGGCTGCCAGTGAAGGTCTATGGGAAGACAGCGGTGAC 786
||||||||||||||||||||||.||||..||.|||||.||||||||.||.
BL00923___cyd 737 AGCCGATGAAAATGGCTGCCAGCGAAGCGCTTTGGGATGACAGCGGCGAT 786
BSNT_05932___ 787 CCTGCTGCTTGGACCGCTTTTGCGACGATCGATAC---AAAAAATGAAAA 833
||.|||||.|||||.|...||||||..||.||.|| .||..|.|||||
BL00923___cyd 787 CCGGCTGCATGGACGGTGCTTGCGAACATTGACACGGACAAGCAGGAAAA 836
BSNT_05932___ 834 AAGCTCAAAT--GAAATCAAAGTTCCTTATGCCTTGAGCTACTTGGCTTA 881
||||| ||..|||...|.||.|||||..|.|||||.||||||||
BL00923___cyd 837 -----CAAATCCGAGCTCAGCATCCCGTATGCGCTCAGCTATTTGGCTTA 881
BSNT_05932___ 882 TCAGAAATTCAGCG--GAAGTGTCAAAGGGATGAAAACCCTTC--AGGCT 927
|.|..||||||||| ||.|||.| .||.|||||.||.||.| |.||
BL00923___cyd 882 TAAACAATTCAGCGGCGATGTGCC--CGGAATGAAGACACTGCAAAAGC- 928
BSNT_05932___ 928 GAGTACGAAAAAATATACGGAAAAGGCGACTACATTCCGCCAGTGAAAAC 977
|.||.|||.|||.|||||||.||||..|.||.||||||||.||||||||
BL00923___cyd 929 -AATATGAAGAAAAATACGGAGAAGGAAATTATATTCCGCCGGTGAAAAC 977
BSNT_05932___ 978 GACATTCTGGAGCTTCCGCATCATGGTAGGAGCAGGTGTTGTCATGATTC 1027
||||||||||||.|||.|.|||||||..|||.||||..||.|.|||||..
BL00923___cyd 978 GACATTCTGGAGTTTCAGAATCATGGCCGGATCAGGACTTTTAATGATCG 1027
BSNT_05932___ 1028 TTGCTGCGTTAGGCGGCCTTTGGTTAAACCGCCGCAAAAAGCTTGAAAAC 1077
||||.||.||...|||.||||...|.|.|..||||||||..||.||||..
BL00923___cyd 1028 TTGCCGCTTTGACCGGTCTTTATCTCAGCTTCCGCAAAAGACTCGAAACA 1077
BSNT_05932___ 1078 AGCAAATGGTATTTGCGCATCATGATCGCGTTGATTTCCTTCCCGTTTCT 1127
||||||||||..|||||.|..|||.|.||.|||||..||||.||.||..|
BL00923___cyd 1078 AGCAAATGGTTCTTGCGGACAATGGTGGCTTTGATCGCCTTTCCATTCAT 1127
BSNT_05932___ 1128 TGCGAACTCCGCGGGCTGGATTATGACAGAAATCGGACGTCAGCCTTGGA 1177
|||.||..|.|||||.|||||.|||||.|||||||||||.|||||.||||
BL00923___cyd 1128 TGCAAATACGGCGGGGTGGATCATGACTGAAATCGGACGCCAGCCGTGGA 1177
BSNT_05932___ 1178 CGGTTATGGGGTTAATGACAACCGCTCAATCTGTGTCACCTAACGTAACA 1227
||||..|.||..|..|||||||.||.||.||.|||||.||.||||||.||
BL00923___cyd 1178 CGGTGTTCGGTATTTTGACAACGGCGCAGTCCGTGTCGCCGAACGTATCA 1227
BSNT_05932___ 1228 GCGGG-CTCCTTGTTATTCTCAATCATCGCATTCGGTGTGATGTACA-TG 1275
||||| .|.| ||.|.|||||..|||||||.|| |||| .|
BL00923___cyd 1228 GCGGGAATGC-TGCTGTTCTCTGTCATCGCGTT----------TACAGCG 1266
BSNT_05932___ 1276 AT---TCT-----TGGTGCAC-TGCTTGTCTTCTTGTTTATCCGTGAGAT 1316
|| ||| |||.||.| |.|||||||.|||||||.|.||.|||||
BL00923___cyd 1267 ATTTATCTTGTGCTGGCGCTCGTTCTTGTCTACTTGTTTGTGCGGGAGAT 1316
BSNT_05932___ 1317 TAAAAAAGG---TGCGGAGCATAGTGATCATCATGATG-TTCCTGTATCA 1362
||||||||| |||..|.|||....|.|||||||||| |||| |||||.
BL00923___cyd 1317 TAAAAAAGGGGCTGCACACCATGACCACCATCATGATGATTCC-GTATCG 1365
BSNT_05932___ 1363 ACAGATCCATTTAGTCAGGAGGTATACCATGGCATCTCTTCATGA 1407
|||||.||.|||..|||||||||.||||||||.|||||||.|
BL00923___cyd 1366 ACAGACCCGTTTGATCAGGAGGTTTACCATGGTATCTCTTAA--- 1407
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