Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00354 and BL00917
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_00354.1.5803.seq
# -bsequence dna-align/BL00917.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00354-BL00917.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00354-BL00917.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00354
# 2: BL00917
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2889
# Identity: 1776/2889 (61.5%)
# Similarity: 1776/2889 (61.5%)
# Gaps: 540/2889 (18.7%)
# Score: 4993.0
#
#
#=======================================
BSNT_00354 1 ATGGGCATTACATCCGTATTAACGAAAG--------ATAATGTAAAAAAG 42
|.||||| |.|.|||..|||..
BL00917 1 ---------------------ATGAAAGCAGCACCCACATTGTCTAAACA 29
BSNT_00354 43 ATAGATA---CAGATATTGATGTTCAAGAAAG-GGATCTTAA-------- 80
||.|||| || ||| |||...|| |||..| |||..||||
BL00917 30 ATTGATATTCCA-ATA-TGAACATC-AGACTGCGGACTTTAATATGGATG 76
BSNT_00354 81 CGTT--TTCATTACATCTGCCAGC-CGAGTGATTGCGCCACTTTGGCCTA 127
.||| |||| |||.| |||| ||.||.||.|||||.||||||||.|
BL00917 77 AGTTGGTTCA----ATCAG-CAGCACGGGTCATCGCGCCGCTTTGGCCGA 121
BSNT_00354 128 TTTCTACATTTGCTGCACGTAATCCGTGGATGGGACTTGAAAACCAACCT 177
||...||.|||||.||.|||.|||||||||||||.||||||.|.|||.|.
BL00917 122 TTGAAACCTTTGCCGCTCGTCATCCGTGGATGGGCCTTGAAGAACAAACA 171
BSNT_00354 178 TTTGATCAG-------GTTGCAAGTTGGTTGAAAAACACTCGC--GATGT 218
|||||.||| | |||..|| |||||...|| .||||
BL00917 172 TTTGAACAGACGGCCCG--GCAGCTT-------AAACAGCAGCTTCATGT 212
BSNT_00354 219 TGATATATACCC-TAGTGCGTCTATGATCCGTTCAGCAAAGAATAAAGGT 267
||||||.||||| .||| |.||.||..|||||||.|||| ||.||.||.
BL00917 213 TGATATCTACCCAAAGT-CCTCCATTTTCCGTTCCGCAA--AACAACGGG 259
BSNT_00354 268 GAG--ATTGATGAA--GATT-TTGTGGAAATGGGGCTG--CAGCGTTGGC 310
||| ||.|||||| |||| || ||||....|||| || .|||||
BL00917 260 GAGAAATCGATGAAACGATTCTT---GAAAAAAAGCTGATCA--ATTGGC 304
BSNT_00354 311 TTGATTCACATTCTTATCACATCCCACGGGACGTGGCAGAGCG------- 353
|.||||||||| ||.|| |||.| .||||||.|
BL00917 305 TCGATTCACAT--------CAGCC--CGGCA---TGCAGAGGGAAACAGC 341
BSNT_00354 354 ------ATTTTG-----------TCATGCTGCATTAAAGTTAGATCCCCT 386
|||||| |||.||||.|..||| || |||
BL00917 342 GGAGGCATTTTGCAAAGCCGCCCTCAAGCTGGACGAAA--TA-----CCT 384
BSNT_00354 387 GCCTTCCGAC--CTTTTATCATCAC---------ATGAGCTGGAGAAATT 425
| ||| ||.||...|||.| |..||||.|..|||..
BL00917 385 G------GACAGCTCTTGAGATCCCGGCAAGTGAAAAAGCTTGCCAAACA 428
BSNT_00354 426 AGTAG---GTGAATGTAGTGGATTGGATCATATCGAGAATGTG------- 465
||..| |.| ||| || ||||| ||
BL00917 429 AGCGGCCCGCG-------------GGA-CA-ATCGA-----TGGCCGAAA 458
BSNT_00354 466 -------TTTATGCAGCCACTAAGTTCGTATAT-----AGAGAATCAAGA 503
|||||..|.||.||.|| |||.|.| |.|||
BL00917 459 AACAAGCTTTATCAAACCGCTCAG--CGTTTTTGCCGGACAGA------- 499
BSNT_00354 504 TGGTGAAAG-GCTAGTCAATATACTAGATCATCATGTCATTAAGTGGAGT 552
|||| ||| .|..|.||.||.||||||||.|||||.|||.|.
BL00917 500 -----AAAGTGCT----CACCTCCTTGACCATCATGTGATTAAATGGTGC 540
BSNT_00354 553 AAATTATATCTTGATGACTCTCAAGCAGGC-TGGACAATGCCTAATCGTG 601
||..|.|..||||||||.||.|||.| ||| |||....|.||..||||||
BL00917 541 AAGCTGTTCCTTGATGAATCACAATC-GGCATGGCGGCTTCCGCATCGTG 589
BSNT_00354 602 AGGAAGGTTTCTATCGTGCTTGGCAGCATCTCATTCAATATGATCCAGCA 651
||.||||.||.||..|.||.||||.|||.||..||.||.|||||||.||.
BL00917 590 AGAAAGGGTTTTACAGCGCATGGCGGCAGCTTGTTGAACATGATCCCGCT 639
BSNT_00354 652 CT-TAGCAAAAAGCAGCG-AGAAAG---------GGTAAAGGATTGGCCG 690
|| |.|| ||| ||||.| | ||.||| ||||||
BL00917 640 CTGTCGC--------GCGCAGAACGCCAACGCCTG--AATGGA-TGGCCG 678
BSNT_00354 691 AAAGAGGCACATTTGGCTTTACAGGAAGCCTTATTCGCACTAGAAA---- 736
.|||||.| .|.|||.|| ||| ||||
BL00917 679 GAAGAGCC------------GCGGGACGC--TAT--------GAAAAAAG 706
BSNT_00354 737 ---TCCCAGAGT---------------CAGAAATCCAGACTTATCTTGAA 768
|||.||.|| ||||..|.|||.|.||.||||||
BL00917 707 CGCTCCGAGCGTTTGATATTTCCAATGCAGACGTTCAGGCATACCTTGAA 756
BSNT_00354 769 GGTCATTTACTTTCATTACCTGGATGGGCAGGGATGATGCTTTGGCGCTC 818
|.||||.|.|||||..|.||.||||||||.|||||||||||||||||.||
BL00917 757 GCTCATCTGCTTTCTCTGCCGGGATGGGCCGGGATGATGCTTTGGCGTTC 806
BSNT_00354 819 CCAGCAATCG-AGCCACGAACATGCACTCCTAACAGAATATTTAGCGGTT 867
.||||||||| || .|||||.|.|.|||.||....||.|||||.||.||.
BL00917 807 TCAGCAATCGCAG-GACGAAGAAGAACTGCTGCTCGAGTATTTGGCTGTC 855
BSNT_00354 868 CGAATATCCATGGAGTGGGCTCTTATAAAGCCATACTTACCTTTGACTAA 917
||..|.||.|||||.|||...|||.|..||||.||.|||||..||.||||
BL00917 856 CGGCTTTCAATGGAATGGATGCTTGTTGAGCCTTATTTACCGCTGCCTAA 905
BSNT_00354 918 --TGAACGAT-CTAAGAAAAA-AATTTCAATTGCTC---CCCTT-ATAGC 959
.|| || || |||||| |..|.|| |||| ||.|| ||.||
BL00917 906 GCCGA---ATCCT--GAAAAAGAGATGCA---GCTCGTTCCTTTGATTGC 947
BSNT_00354 960 AGCTTGGATTCATTGGGGTGGGCTTACATTAGAAGAATGG-TCACAGA-- 1006
..|.|||.|.||||||||.||.|||||....||||||||| || ||
BL00917 948 GTCCTGGCTGCATTGGGGCGGCCTTACGCCTGAAGAATGGCTC---GAAC 994
BSNT_00354 1007 TGACGGC--CATTGAACAAAA--CGA-ATATTTATCATTTGCCTACAGCT 1051
|..|.|| || ||.||||| ||| | |||.||.|.|||..|.|||
BL00917 995 TTTCCGCAGCA--GAGCAAAAAGCGAGA---TTAACACTCGCCCGCCGCT 1039
BSNT_00354 1052 TTGATGAGA-AACTTCGCAAGAAACTTTGGTTAGAAGCTTGGGAGCAAAC 1100
|||||||.| ||| .||||.|...||.|||.|.|||||||||||.|||||
BL00917 1040 TTGATGATATAAC-GCGCAGGCGTCTCTGGCTGGAAGCTTGGGAACAAAC 1088
BSNT_00354 1101 GTACACTGATCGA-TTAAGCCAGAAGATCATCTCG--AAAC-AACGTGAA 1146
.|||.|.|.| || .|||| ||||.|||||.|| |||| |||.||
BL00917 1089 ATACGCCGCT-GAGGTAAG---GAAGCTCATCACGGCAAACAAACCTG-- 1132
BSNT_00354 1147 ACCG--GCGGTAAAAAATC-------TGCATTAGCTCAAATAGCATTCTG 1187
||| ||.| |.||||.| ||| |.||.|||.|.|||||.||
BL00917 1133 -CCGCTGCTG-ACAAAAGCGAAACGGTGC--TGGCCCAATTCGCATTTTG 1178
BSNT_00354 1188 CATCGATGTACGATCAGAACCTTTTCGTCGTCA----ACTAGAAAAAGAA 1233
.||.||.||.||.|||||.||.||.|| || |.|.|||||...|
BL00917 1179 TATTGACGTCCGTTCAGAGCCGTTCCG----CAGGGCATTGGAAAAGTCA 1224
BSNT_00354 1234 GGCCCGTTTGAAACGAT-TGGTATTGCTGGTTTCTTCGGGGTGCCGATTG 1282
|||||.|||||||| || |||.|..||.||.||.|||....||.|.||.|
BL00917 1225 GGCCCTTTTGAAAC-ATATGGAACAGCGGGCTTTTTCAATATGGCAATCG 1273
BSNT_00354 1283 CAACTTGTGAACTTGGCAGTAAACACAGTCA-TGCTTCCT-TACCGATCA 1330
.|||.||.|||||.||||.|||||||||.|| .||| || |.|||.|||
BL00917 1274 AAACGTGCGAACTAGGCACTAAACACAGCCACAGCT--CTCTGCCGGTCA 1321
BSNT_00354 1331 TACAAAAACCGCAAAATAAAATAAAAGA---GTTCGCAGA--------TG 1369
|.|.|||||||||..||..|.||.|||| |..||.||| |.
BL00917 1322 TCCTAAAACCGCAGCATCGAGTAGAAGAAACGGCCGAAGAATTACCCTTT 1371
BSNT_00354 1370 AGGATGTATTCAA-AAAATACAATCAA-CGGAAGCAAGCAATTCATTCTT 1417
|.|..||| |||| ||.|||.|| || |||.||| .||..
BL00917 1372 AAGTCGTA-TCAAGAACATAAAA--AAGCGGCAGC----------CTCAC 1408
BSNT_00354 1418 TAAGCCATACCTTTAAAACGATGAAGCAGAATGCGCTTT---CGAGCTTA 1464
|.|||....||||||||||||||||.|||||| ||.| ||.||.|.
BL00917 1409 TGAGCTCCGCCTTTAAAACGATGAAACAGAAT---CTATTGGCGGGCATG 1455
BSNT_00354 1465 CTACTGCCTGAGCTAAGTGGACCTTGGCTTACTCTGCAAATGGCAGCCCG 1514
||.||.||.||..|.||.||.||||||||.|..|||||||||||.||.||
BL00917 1456 CTGCTTCCCGAAGTGAGCGGGCCTTGGCTGAGCCTGCAAATGGCCGCGCG 1505
BSNT_00354 1515 TAGCTTTGT--------------GCCAAGAAAGGCGGGGCGTTTCATTC- 1549
.|||.|||| |||||| |||||
BL00917 1506 CAGCCTTGTCCCCCGCGCAGCCGGCCAAG---------------CATTCA 1540
BSNT_00354 1550 GTAATCTCCGTGAGG----CTTGGTTGCGCAAACCTGATACAAAACTCTC 1595
|.||| |.|.|| |.|||.||...||.|||.|.|||||.|||||
BL00917 1541 GAAAT----GCGCGGAAAACATGGCTGAAGAAGCCTCAGACAAAGCTCTC 1586
BSNT_00354 1596 GCTTCAT--CATGATGCTACA---GAGGCGGAAATACCTGTGGGTTTTAC 1640
||||.|| ||.| |..||| ||.||.|..||.||.||.||.|||||
BL00917 1587 GCTTGATCGCACG--GAAACATCTGAAGCCGGCATTCCGGTCGGATTTAC 1634
BSNT_00354 1641 TGATGAAGAAAAAGTGAACTATGCTCGCCAAGCATTAAAAATGATGGGGT 1690
.||.||||||||||....||||||..|.||.||||||||.|||||||||.
BL00917 1635 GGAAGAAGAAAAAGCCGCCTATGCCAGACAGGCATTAAAGATGATGGGGA 1684
BSNT_00354 1691 TAACAGAGAATATCGCACCATTGGTTGTGATATGCGGGCACGGCAGTCA- 1739
|.|||||.....||||.||..|||||||.||.|||||||||||||| ||
BL00917 1685 TCACAGACCGGTTCGCTCCGCTGGTTGTCATTTGCGGGCACGGCAG-CAG 1733
BSNT_00354 1740 AAGTACCAATAATCCTTATTCCGCAGCACTTGACTGTGGCGCCTGCGGTG 1789
|||.||.|||||.||||||.|..|.|||||.|||||.|||||||||||.|
BL00917 1734 AAGCACGAATAACCCTTATGCATCGGCACTGGACTGCGGCGCCTGCGGAG 1783
BSNT_00354 1790 GAGCGGCCGGTGGATTCAATGCAAGAGTTTTAGCTGCTTTATGTAATCT- 1838
|.||..|.||.|..|||||.|||.|.||..||||.||||||||.|||||
BL00917 1784 GCGCATCTGGCGCTTTCAACGCACGCGTCCTAGCCGCTTTATGCAATCTT 1833
BSNT_00354 1839 ------ATCAGAGGTACGAGAAGCT---CTTTTAACTGAAGGAATTAAAA 1879
.||||| ||||.||| || |.||.||.|||...|
BL00917 1834 CCAAGCGTCAGA-----GAGAGGCTTCGCT-----CCGACGGCATTTTTA 1873
BSNT_00354 1880 TCCCTGAGGATACGGTTTTTGCGGCAGCTGAACATAATACAACGGTGGAT 1929
|.||.||.||||||||.||.||.||.||.||.||.|.||||||..|||||
BL00917 1874 TTCCGGATGATACGGTATTCGCTGCCGCAGAGCACATTACAACTTTGGAT 1923
BSNT_00354 1930 GAATTACATTGGCTTTATGTACCAGAGCTTTCCG----AAGCTGCACAAG 1975
|||.|.||.|||||.||||||||.|||| |.||| ||||| |||.
BL00917 1924 GAACTGCACTGGCTCTATGTACCTGAGC-TGCCGGCTAAAGCT---CAAC 1969
BSNT_00354 1976 AAGCATTTGAACAAATTGAAGCCGTGATGCCGAAAGTGAGACATCATGTA 2025
||||.|||||.|..||..|..|.|||.|.||..|.|||||.|.|..|||.
BL00917 1970 AAGCGTTTGACCGCATCAACTCTGTGCTTCCCGATGTGAGCCGTACTGTC 2019
BSNT_00354 2026 AACGCAGAACGTCTAGCCCAATTACCGAATTTC--CAATCGAAGCTAAAA 2073
...||.|||||..|||...|..|.|||.|..|| |.||| ||
BL00917 2020 GGAGCCGAACGCTTAGAAGAGCTGCCGCAGCTCGGCTATC--------AA 2061
BSNT_00354 2074 AATCC-------GAAGGCTGAGGCAAACCGATTTGCGGAAGATTGGAGTG 2116
||||| ||| |.|||| ||.||.||.|||||||||||.|
BL00917 2062 AATCCGCGGAATGAA-GTTGAG------CGCTTCGCCGAAGATTGGAGCG 2104
BSNT_00354 2117 AGATACGTCCGGAATGGGGACTGGCTCGTAATGCCGCTTTTATTATCGGT 2166
|.||.|||||.||||||||.|||||.||.||||||.|.||.||.|||||.
BL00917 2105 AAATCCGTCCCGAATGGGGGCTGGCCCGAAATGCCTCATTCATCATCGGC 2154
BSNT_00354 2167 AAACGTGAACTAACTCAGG--------ATTGTGATTTGGAAGGCAGAGCC 2208
|.|||....||.||.|.|| .|||.| |||||| ||.
BL00917 2155 ACACGCCGGCTTACACGGGGGGCCGACCTTGAG----GGAAGG----GCT 2196
BSNT_00354 2209 TTTCTCCATAATTATGATTGGAAGCAGGATGAAAGCGGTGAACTCC---- 2254
|||||.||.|..|||||.|||..|.|.||.||...||| ||||
BL00917 2197 TTTCTGCACAGCTATGACTGGCGGAATGACGAGGACGG----CTCCATCC 2242
BSNT_00354 2255 -TAGCAAATATTATTGCAGGACCTGGAACTGTAGCCCAATGGATTAATTT 2303
|||| ...||.|||.||||.||||||||.||.|||||||||||.|||.|
BL00917 2243 TTAGC-GGCATCATTTCAGGGCCTGGAACAGTGGCCCAATGGATCAATCT 2291
BSNT_00354 2304 ACAATATTACGCATCAACGGTAGCACCTCATTATTATGGCAGCGGAAATA 2353
.||.||||||||.|||||.||.|||||.|||||||||||.||||||||||
BL00917 2292 GCAGTATTACGCGTCAACCGTTGCACCGCATTATTATGGAAGCGGAAATA 2341
BSNT_00354 2354 AAGCAACTCAAACCGTTACTTCAGGTCTCGGCGTTATGCAGGGGAATGCA 2403
||||||||||||||||.|||.|.|||||||||||||||||.||.||||||
BL00917 2342 AAGCAACTCAAACCGTCACTGCCGGTCTCGGCGTTATGCAAGGAAATGCA 2391
BSNT_00354 2404 AGCGA-CTTGTTAGCCGGACTGCCTTGGCAATCCGTCATGGAATCAGATC 2452
||||| ||| ||.|||||.||.||.|||||.|||||||||...||||||.
BL00917 2392 AGCGATCTT-TTGGCCGGTCTCCCATGGCAGTCCGTCATGCGGTCAGATG 2440
BSNT_00354 2453 ACGAGGCCTATCATTCTCCTCTTCGTTTATTGATACTCATCCAAGCACCT 2502
||||...|||||||.|.|||||..|..|..||||..|.||..||||.||
BL00917 2441 ACGAAATCTATCATGCGCCTCTCAGGCTGCTGATCGTGATTGAAGCGCC- 2489
BSNT_00354 2503 AGA-GAATATGTAGAACGG-TTATTAA-----ATCATGACTCAGCATTTC 2545
.|| ||..||.|.|||||| |..||.| |||| |||| ||.|
BL00917 2490 GGATGATGATATCGAACGGCTCCTTGACCGCGATCA-----CAGC-TTCC 2533
BSNT_00354 2546 TGCAAAAAGTTCAAAATGGATGGGTCCGACTGGCTAATATTGATCCAGAA 2595
.||||||.|...|.||.||||||.|.|..|||||...||||.||||.||.
BL00917 2534 GGCAAAAGGCGGAGAACGGATGGATTCATCTGGCATCTATTAATCCGGAG 2583
BSNT_00354 2596 GGATGTTGGGAAAGCTGG----------TAA-------- 2616
|||...|||.|.|.|||| |||
BL00917 2584 GGAAAATGGAAGAACTGGACAAACACGATAAATGAATGA 2622
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