Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00474 and BL00908
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00474___lmrB.1.5803.seq
# -bsequence dna-align/BL00908___lmrB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00474___lmrB-BL00908___lmrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00474___lmrB-BL00908___lmrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00474___lmrB
# 2: BL00908___lmrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1602
# Identity: 917/1602 (57.2%)
# Similarity: 917/1602 (57.2%)
# Gaps: 345/1602 (21.5%)
# Score: 2237.0
#
#
#=======================================
BSNT_00474___ 1 TTGGAAACAACAGCTAAAGCATCTC---AGCAATACAAAGTGATGCCGAT 47
.||||.| ||.|..|||| .|| ||||||| ..|||.| || |
BL00908___lmr 1 ATGGAGA-AAAATTTAAA----TTCCAAAGCAATA-TTAGTCA--CC--T 40
BSNT_00474___ 48 T-ATGATTTCCTTGCTGTTGGCCGGT---TTTATCGGCATGTTCAGTGAA 93
| |||||| ||| |||.|.|..||.||.|..|||
BL00908___lmr 41 TCATGATT---------------GGTGCATTTTTTGCAATATTAAACGAA 75
BSNT_00474___ 94 ACAGC-GCTGAATATTGCGTTAACCGACCTTATGAAGGAATTGAACATTA 142
|| || |.||||.||.||.|||||.||.||.|||.|.|..||..||.||.
BL00908___lmr 76 AC-GCTGTTGAACATAGCATTAACAGAGCTGATGGAAGTCTTTCACGTTG 124
BSNT_00474___ 143 CAGCGGCAACCGTCCAATGGTTAACGACGGGCTACC-------TGCTTGT 185
..||..|.|||||.|||||| |.|||.||| |||||||
BL00908___lmr 125 ATGCCCCGACCGTTCAATGG-------CTGGCAACCGGATTTATGCTTGT 167
BSNT_00474___ 186 ACTCGGTATCCTTGTT----CCTGTTTCAGGACTGCTGTTGCAGTGGTTC 231
|.|.||| .|||| |||.||||.|...|.|||.|.||.||||||
BL00908___lmr 168 AATGGGT----GTGTTAATGCCTATTTCCGCTTTACTGATTCAATGGTTC 213
BSNT_00474___ 232 ACAACAAGACAGCTTTTTACCG------TGTCACTTATCTTTTCAATTTT 275
||.|||||||||.|.||||.|| ||||..|| ||||
BL00908___lmr 214 ACGACAAGACAGATGTTTATCGGCGTTATGTCGATT----------TTTT 253
BSNT_00474___ 276 ----AGGTACATTCATTGCGGCGCTTGCGC--CGAGCTTCTCGTTTTTAT 319
|||.||..||||||| ||||||.|| .||..|||.||.|..|.|
BL00908___lmr 254 TAGCAGGAACCGTCATTGC--CGCTTGTGCAGTGAATTTCCCGATGCTCT 301
BSNT_00474___ 320 TAGCGGCAAGGATCGTTCAGGCACTTGGAACCGGTCTTTTACTGCCCCTA 369
|..|||...|.||..||||||||.|.||.||.||.||.||..|.|||.|.
BL00908___lmr 302 TGACGGGGCGCATGATTCAGGCAGTCGGTACGGGACTCTTGATCCCCATT 351
BSNT_00474___ 370 ATGTTTAACACAATCTTGGTGATTTTCCCGCCTCATAAACGGGGTGCCGC 419
||..|.|||.|..|||||.||||||.||.|||| |..|| ||||
BL00908___lmr 352 ATTATGAACGCCCTCTTGCTGATTTACCGGCCT-------GAAGT-CCGC 393
BSNT_00474___ 420 --------AATGGGAACGATCGGGCTTGTCATTATGTTCGCGCCCGCCAT 461
.|||||.|||.||||.||.|||||.|||||.||.||.||.||
BL00908___lmr 394 GGGAAAATCATGGGGACGTTCGGACTGGTCATCATGTTTGCTCCGGCGAT 443
BSNT_00474___ 462 CGGCCCAACTTTCTCAGG----ATTGGTTCTGGAGCAT-CTCAACTGGCA 506
|||.||.|||||.||.|| |||| |.|| ||| |||..|||||.
BL00908___lmr 444 CGGACCCACTTTTTCGGGCGTTATTG----TTGA-CATCCTCGGCTGGCG 488
BSNT_00474___ 507 CTGGATTTTTTGGATC-TCTCTTCCGTTCCTTGTGCTGGCGCT------- 548
||||.|.||| ||| ||..| .||||||.|||.| |
BL00908___lmr 489 CTGGCTGTTT---ATCATCGTT---ATTCCTTTTGCAG----TATTTTCA 528
BSNT_00474___ 549 ----TGTTTTCGGTATCGCATATATGCAGAATGTATCTGAAACGACAAAG 594
|||||.|||||..| |||.||||.|||||....|||.||||....
BL00908___lmr 529 ATTCTGTTTGCGGTAAAG--TATTTGCAAAATGTCGGAGAACCGACGCGC 576
BSNT_00474___ 595 CCGAAAATC-----GATGTATTGTCTATCATCCTGTCGACGATTGGCTTC 639
||| | |||.|.||.||.|||||.||.||.||.||.||..||
BL00908___lmr 577 CCG-----CGGGCTGATTTTTTATCGATCATACTCTCAACCATCGGGATC 621
BSNT_00474___ 640 GGCGGCATTGTGTTCGGATTCAGCAACGCGGGTGAAGGCTCCGG--GGGA 687
|||||.||.||.|.|||||||||||..||.||.| ||||||.|| ||
BL00908___lmr 622 GGCGGAATCGTATACGGATTCAGCAGTGCCGGAG-AGGCTCAGGAAGG-- 668
BSNT_00474___ 688 TGGTCCAG-CCCGACTG-TTATC-GTGTCGCTGATTGTCGGCGTTGTCGG 734
|.|.||| |||..||| |.||| |||| |.|.||..||.||.|..||.|
BL00908___lmr 669 -GTTTCAGTCCCCTCTGATCATCGGTGT-GATCATCATCAGCCTGATCAG 716
BSNT_00474___ 735 CCTTATCCTATT-TTC--AATCCGCCAGCTGACAA--TGAAGCAGCCG-- 777
| |||.|.|| ||| ..|.||.|||.||| || |||| ||.|||
BL00908___lmr 717 C---ATCGTGTTGTTCGTGCTTCGGCAGTTGA-AACTTGAA-CAACCGTT 761
BSNT_00474___ 778 --ATGATGAACCTCCGTGCGTTC---------AAATACCCAATGTTTATT 816
.||||| |.||||.|||| ||.|||.|
BL00908___lmr 762 GCTTGATG----TGCGTGTGTTCGCCTATAAAAATTACAC---------- 797
BSNT_00474___ 817 TTGGGTGTGATCATGGTGTTCATTTGTATGATGGTCATTCTGTCATCTAT 866
|..|..|||.|.|.|||.|.||||.||||||.|| .|.||
BL00908___lmr 798 --------GCGCGGGGTCTGCCTTTTTGTGATTGTCATTATG---GCGAT 836
BSNT_00474___ 867 GCT-GCTTC-----------TGCCGATGTATCTGCAA-GGCGGCTTAGTC 903
|.| ||||| |||||||||||.||||| |||.|||..||
BL00908___lmr 837 GTTCGCTTCCGAAATTGTGATGCCGATGTATTTGCAAGGGCCGCTCGGT- 885
BSNT_00474___ 904 CTGACTGCATTTGCATCTGGTCTTGTTCTCTTGCCGGGCGGTATTTTAAA 953
.|..|.|||...|||.|.||||||.|.||.|||||.||.|...|..||||
BL00908___lmr 886 TTTTCAGCAAAAGCAGCAGGTCTTTTGCTTTTGCCCGGAGCCTTGCTAAA 935
BSNT_00474___ 954 TGGATTTATGTCCCCTGTTACAGGCCGC-TTGTTCGATAAATACGGGCCG 1002
.||..|.|||||.||.|.|| .||.||| |||||||||||.|.|||.|||
BL00908___lmr 936 CGGTCTCATGTCGCCGGCTA-TGGGCGCTTTGTTCGATAAGTTCGGCCCG 984
BSNT_00474___ 1003 AAATGGCTTGTCATTCCGGGATTTGTGATTGTCACTGTTGTACTATGGTT 1052
|.|...||..|||||||.| ||||.||.|||
BL00908___lmr 985 AGAAAACTCATCATTCCAG--------------------GTACGATCGTT 1014
BSNT_00474___ 1053 CTTCTC----AAATGTT----------ACGACCGCTTCAA--CGGCTGTG 1086
||..|| ..||||| |.|| |||| |..|.|||
BL00908___lmr 1015 CTCGTCGGCGTGATGTTTTTCTTCAGCAGGA-----TCAATCCTTCGGTG 1059
BSNT_00474___ 1087 CTGATT---------ATCATCCTGCACACCTGCTTGATGATCGGGATTTC 1127
|.|||| ||.||..|..|||.|..|||||||.|....||.||
BL00908___lmr 1060 CCGATTTGGGCGTTCATTATTGTATACATCATCTTGATGCTGTCCATCTC 1109
BSNT_00474___ 1128 TATGATCATGATGCCTGCGCAAACAAACGGTTTAAACCAACTGCCG-CGC 1176
....|||||||||||.||.||.||.||.|..||||||.||.||||| .||
BL00908___lmr 1110 GGCCATCATGATGCCCGCACAGACGAATGCATTAAACGAATTGCCGAAGC 1159
BSNT_00474___ 1177 GAATTT-TATCCAGACGGCACCGCCATTATGAACACGCTGCAGCAAATGG 1225
|||| |||||..|.||.||.||.|||...||.||.||.||||...|.|
BL00908___lmr 1160 --ATTTATATCCTCATGGAACGGCAATTTCCAATACTCTTCAGCCTGTTG 1207
BSNT_00474___ 1226 CCGGCGCTATCGGAACAGCGGTTGCG------GTCAGCATTATGGCTGCA 1269
|.|||||..|||| .|||.|| ||||||||.|||
BL00908___lmr 1208 CAGGCGCACTCGG------TGTTTCGGTGTTCGTCAGCATCATG------ 1245
BSNT_00474___ 1270 GGCCAGCATGATTATATGAGTACAGTTAAAA---ACCCTGCCG------- 1309
.||||| |.|||| |||| |.|.|||||
BL00908___lmr 1246 AGCCAG-------------GGACAG--AAAAGCTATCTTGCCGGCCAAGA 1280
BSNT_00474___ 1310 ---ATCCGGCAGTC--ATCCCGC---AAGCTTTGACAGCA-GGCGTACAG 1350
|.||.|||..| |||..|| ||||..|||| .|| ||.||.||.
BL00908___lmr 1281 AGCAGCCAGCAAACAAATCGTGCATGAAGCGATGAC-TCATGGTGTTCAC 1329
BSNT_00474___ 1351 CACGCAT-TTGTGTTTGCAAT-GATT---GTTGCCATTATCGGTTTAATT 1395
||.||.| .|| ||||||..| |.|| |.|| |||||.|||..||
BL00908___lmr 1330 CATGCCTACTG-GTTTGCGCTCGCTTTAAGCTG----TATCGCTTTCTTT 1374
BSNT_00474___ 1396 GGCGCTTTCTTTATGAA----------GCGCGTGAAGGTAGATCATTAA- 1434
..||||||.|||||.|| ||||.|| |..|.|||.|..||
BL00908___lmr 1375 ACCGCTTTATTTATTAAAAAAGCGGTCGCGCCTG-ATTTTGATAAAGAAT 1423
BSNT_00474___ 1434 -- 1434
BL00908___lmr 1424 AA 1425
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