Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02939 and BL00896
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_02939.1.5803.seq
# -bsequence dna-align/BL00896.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02939-BL00896.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02939-BL00896.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02939
# 2: BL00896
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1596
# Identity: 660/1596 (41.4%)
# Similarity: 660/1596 (41.4%)
# Gaps: 714/1596 (44.7%)
# Score: 2186.0
#
#
#=======================================
BSNT_02939 0 -------------------------------------------------- 0
BL00896 1 ATGAGATGGTGGAAAGCAAAAACGCGAAGAATGATACAGTCGTCCAACAA 50
BSNT_02939 0 -------------------------------------------------- 0
BL00896 51 GCCGGATAAACCTAAAAATGAAGTGCCGTCTGTGGAGTCAACTGGGTATT 100
BSNT_02939 0 -------------------------------------------------- 0
BL00896 101 TTACCGGCGATTTTGATCACGACTTGAAACTGGCCAAAACGGCTATGGAG 150
BSNT_02939 0 -------------------------------------------------- 0
BL00896 151 AATAACTCAGACGTTCATTTCCGCGAATTCAACTTAGGGCGCACCGGCAT 200
BSNT_02939 0 -------------------------------------------------- 0
BL00896 201 CCGCGCGGCGATTGTATTTGTCGAAATGCTTGCGGATCAAGACCTGATTG 250
BSNT_02939 0 -------------------------------------------------- 0
BL00896 251 ACAAGCATATTATGAAATCCCTTATGGATGATTTTTCCAAAGAATATAAA 300
BSNT_02939 0 -------------------------------------------------- 0
BL00896 301 GTTGAACTTTCTTCATTAAGCAGCAATGTGACCGACTTAATTAAAAAGCA 350
BSNT_02939 0 -------------------------------------------------- 0
BL00896 351 AATTTTATCAATTAGCGGCGTATCAGAGGTAAACCATGTCAACGAAGTGG 400
BSNT_02939 1 -------------AT-GGGTTCGACAGCGCTTCTCATCGATGGAATACCG 36
|| .|||.||.|...|||.||.|||||.|| |.|.|
BL00896 401 TGCCCGAAGTGTTATCCGGTGCGGCCATGCTGCTGATCGACGG--TTCAG 448
BSNT_02939 37 CAGGCGTTT--CTTCTGGGAACTGTAAAAAAACAAAATCGAAGTATCA-- 82
|.|..|||| ||.|||||||||||.|||| .||||..|||.|.||
BL00896 449 CGGAAGTTTTACTGCTGGGAACTGTTAAAA---GAAATACAAGGAACATT 495
BSNT_02939 83 -AGGAGCCGCTTTCAGAAGCGCTTGTCAGAGGACCGCGCACAGGCTTTAC 131
|.|||||..|.||||||.|..|.||.|||||..|||||...||||||||
BL00896 496 GAAGAGCCCGTATCAGAATCTTTGGTAAGAGGCGCGCGCGTCGGCTTTAC 545
BSNT_02939 132 AGAAGAGTTGAGTACGAATACAGCTCTTTTGAGACAGCAAGGAAAAAATG 181
||||..|.|..|.||.||||||||.||||||||.|||||.||.||||
BL00896 546 AGAAACGATCGGCACCAATACAGCCCTTTTGAGGCAGCACGGCAAAA--- 592
BSNT_02939 182 ATCAATTAACATTG---------CAGAGATTTGAAGTAGGAACACGA--- 219
||||| ||| ||| || ||||.||||.||.|..|||
BL00896 593 ATCAA--AAC-TTGTCTATGGTTCA---ATTTCAAGTTGGGAAGCGAGCC 636
BSNT_02939 220 -TTAAAAAAGGATTTAATTATCGCTTATATGAATGACATTGCAGACCCAA 268
|.|||| ||.|..|..||||||||||.||.||||||||.||.|||.
BL00896 637 GTCAAAA----ATCTTGTCGTCGCTTATATCAAAGACATTGCGGAACCAG 682
BSNT_02939 269 AAGTAGTCGAGGAAGTAAGAAAAAGAGT-GAGAGGGATTGAGATCGATCA 317
...|.||.||.|||||.|.|||||||.| || |..||||||.||.|||.|
BL00896 683 GGCTGGTGGAAGAAGTCAAAAAAAGAATCGA-AAAGATTGATATAGATGA 731
BSNT_02939 318 TTTGCCGGAGTCAGGCTACGTTGAACAGTTAATTGAGGATAATTATTTGA 367
|.|.|..||.|||||.|..||.||||||.|.||.||.||.||||||.|.|
BL00896 732 TGTCCTTGAATCAGGTTTTGTCGAACAGCTGATCGAAGACAATTATCTCA 781
BSNT_02939 368 GCCCGTTCCCGCAAGTACAGAGTACAGAACGTCCTGATCGCGTCATAAGC 417
|.||.||.|||||.||.||.||.||.|||||||.|||..|.||.||.||.
BL00896 782 GTCCATTTCCGCAGGTGCAAAGCACTGAACGTCTTGACAGGGTAATGAGT 831
BSNT_02939 418 GAATTAATGGAAGGAAGAGTAGCTATTCTGCTAGACGGCACTCCGTTTGC 467
|..||||||||.||||||||.||.|||.|..|.|||||.||.||.||||.
BL00896 832 GCGTTAATGGAGGGAAGAGTGGCCATTTTATTGGACGGAACGCCTTTTGT 881
BSNT_02939 468 TTTGATTGTTCCAGTCACTTTCAGCATGATGCTTCAATCGCCTGAAGATT 517
|||.||.|||||.||.||.|||||||||.|.||.||||||||.||.||||
BL00896 882 TTTAATCGTTCCGGTTACATTCAGCATGCTCCTCCAATCGCCCGAGGATT 931
BSNT_02939 518 ATTATGAACGGTGGTTCCCGAGCTCGCTCATCAGATTGCTGAGGTTCATC 567
||||||||||.|||.|.|||||.||.||.|||.|..|..||.|..||..|
BL00896 932 ATTATGAACGCTGGCTGCCGAGTTCCCTGATCCGCATCATGCGAATCGGC 981
BSNT_02939 568 GCAGCAATGATAACATTATTCGC-------ACCCGCTTTATATATATCAT 610
|||||.||||| .|||| .||.|||.|||||||.||.|
BL00896 982 GCAGCCATGAT-------CTCGCTGCTTGGGCCGGCTCTATATATTTCCT 1024
BSNT_02939 611 TTATTTCTTTTCATCCGGGGTTAATTCCGACCAAGCTGGCAATTTCAATT 660
|||||||.||||||||.|||.|.|||||||...|.||.||.|||||.|||
BL00896 1025 TTATTTCGTTTCATCCCGGGCTGATTCCGAGTGAACTTGCGATTTCCATT 1074
BSNT_02939 661 TCCGGGACGCGCCAAGGTGTTCCGTTCCCATCCCTCATTGAAGC-CTTAT 709
.||||.|||.|...||||||.||.||.|||||.||.|||||||| ||.|
BL00896 1075 ACCGGAACGAGGGTAGGTGTGCCTTTTCCATCGCTGATTGAAGCGCTCA- 1123
BSNT_02939 710 TTATGGAAGTCGCGATCGAAATTTTAAGAGAAGCGGGGCTTCGTCTGCCA 759
||||||||||.||.||.||||||||..|.||.||.||.||.||.||.|||
BL00896 1124 TTATGGAAGTGGCAATTGAAATTTTGCGCGAGGCCGGCCTGCGGCTTCCA 1173
BSNT_02939 760 AAACCGATTGGACCCGCAATTGGCATAGTTGGCGGATTAATCATC-GGGA 808
|||||.||.||.|||||.||.||.||.||.|||||..|.|||||| ||||
BL00896 1174 AAACCAATCGGTCCCGCGATGGGAATCGTCGGCGGTATCATCATCGGGGA 1223
BSNT_02939 809 AGCAGCTGTGCAGGCGGGGATTGTCAGTCCAATCATGGTCATTGTTGTTG 858
.||.||.||||||||.||.||.|||||.||.||.||||||||.||.||||
BL00896 1224 GGCTGCCGTGCAGGCAGGCATCGTCAGCCCGATTATGGTCATCGTCGTTG 1273
BSNT_02939 859 CGCTCACAGCAATTTCTTCATTTGCCATCCCGCATTATAGCACAGGTAT- 907
|..||||.||.||||||||||||||.||.||.||.||.|||.|.||.||
BL00896 1274 CCGTCACCGCGATTTCTTCATTTGCGATTCCTCAATACAGCGCCGGCATT 1323
BSNT_02939 908 ---------------AG--------------------------------- 909
||
BL00896 1324 TCGCTGCGCATGCTGAGATTTGTAGCGATGTTTTGTGCAGCCACGTTCGG 1373
BSNT_02939 909 -------------------------------------------------- 909
BL00896 1374 TTTGTACGGGGTGATTATGTTTTTCCTCATGCTTGCCAGCCACGCGGTGA 1423
BSNT_02939 909 -------------------------------------------------- 909
BL00896 1424 AGCTGAAAAGCTTTGGCGTTCCTTATGCGAGCCCTGCCGTTCCTTATCGT 1473
BSNT_02939 909 -------------------------------------------------- 909
BL00896 1474 TTGCGCGATTGGAAAGACTTCATCGTTCGCATGCCGATACAGATGATGAA 1523
BSNT_02939 909 ---------------------------------------------- 909
BL00896 1524 AAAACGGCCGAAGCTGTTAAAAACAGACGATTCGACACGCCAGTAG 1569
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