Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03022 and BL00893
See
Amino acid alignment /
Visit
BSNT_03022 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_03022___ynzE.1.5803.seq
# -bsequence dna-align/BL00893___ynzE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03022___ynzE-BL00893___ynzE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03022___ynzE-BL00893___ynzE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03022___ynzE
# 2: BL00893___ynzE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity: 216/439 (49.2%)
# Similarity: 216/439 (49.2%)
# Gaps: 161/439 (36.7%)
# Score: 579.5
#
#
#=======================================
BSNT_03022___ 0 -------------------------------------------------- 0
BL00893___ynz 1 ATGGGTAAGTTGACTGAAAAGCTGGGTTTGGCTCTTGTTTTTTCAATCGT 50
BSNT_03022___ 1 -----------------------------------------------TTG 3
||.
BL00893___ynz 51 TGTCTGGCTTGGCGCCACCGTATTTTTTATGCTGTTCGGCAGTGCGGTTC 100
BSNT_03022___ 4 TTGACTG-ATCCGGCTGAAGAAGCCTTTTTG--CCGAACTTTCTTC-TCT 49
|| ||.| |.||||| .||||.|..|||.|| ||| ||||.|.| |||
BL00893___ynz 101 TT-ACAGAACCCGGC-CAAGATGGTTTTATGCTCCG--CTTTTTGCTTCT 146
BSNT_03022___ 50 TGGGAG-CGGACAC---CGCTCTTGTTTTATGCCTTG-TGTTC-TTTCTC 93
| |.|| |||| || .||.||| ||.||||||.|| ||.|| |||.||
BL00893___ynz 147 T-GAAGCCGGA-ACTTTTGCCCTT-TTATATGCCGTGATGCTCGTTTATC 193
BSNT_03022___ 94 -------TATCAAAAACTCGATCAATCACAGTTCGCGGTGATAAAGCTAG 136
|..||||| ||| .|||.||||.|.|.|||||.|
BL00893___ynz 194 GGCGGGTTGACAAAA---CGA--------GGTTTGCGGCGGTTAAGCTTG 232
BSNT_03022___ 137 GTATATG-GGGATCAGCGGTCGGTTTATTGATTGATACGATTTCCCTT-- 183
|.|| || |||.||.||.||||||||.||..|.| |||.|||..|||
BL00893___ynz 233 GCAT-TGTGGGGTCGGCTGTCGGTTTGTTTCTCG--ACGCTTTTTCTTTA 279
BSNT_03022___ 184 TGGAATCATCCCCTCATCCTCCCGGCTTTATCAAAGGGCCAAGTTATTGC 233
|||||||||.|.||.|||.|||||||..|.|||.|.|||||..|.||||.
BL00893___ynz 280 TGGAATCATTCGCTGATCTTCCCGGCGCTTTCAGATGGCCAGATGATTGG 329
BSNT_03022___ 234 GTTTGCGATATGGATGGTATGCGCCTACTG-CATGTATTTGCTCATTCCG 282
|||||||.|.||||||||.|.|||.|| || ||||||||||...||.|||
BL00893___ynz 330 GTTTGCGGTTTGGATGGTCTTCGCGTA-TGCCATGTATTTGACGATACCG 378
BSNT_03022___ 283 CTGAAATTATCACATAAAAAATGA--------------- 306
| |.||| |.|.|||||.||
BL00893___ynz 379 C-----TCATC-CTTGAAAAAAGAAGGTCTGCAGTTTAA 411
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.