Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01037 and BL00849
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_01037___ydiF.1.5803.seq
# -bsequence dna-align/BL00849___ydiF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01037___ydiF-BL00849___ydiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01037___ydiF-BL00849___ydiF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01037___ydiF
# 2: BL00849___ydiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1999
# Identity: 1401/1999 (70.1%)
# Similarity: 1401/1999 (70.1%)
# Gaps: 143/1999 ( 7.2%)
# Score: 4762.0
#
#
#=======================================
BSNT_01037___ 1 ATGATGATCTTACAAATTAATCAGCTGTCCAAATCGTTTGGTGCTGATAC 50
||||||||.||||||.|.||||||||.||.|||||||||||.||.|||||
BL00849___ydi 1 ATGATGATTTTACAAGTAAATCAGCTTTCAAAATCGTTTGGAGCCGATAC 50
BSNT_01037___ 51 TATTTTAAACAATATAAAGCTGGAAGTCAGAAATCGTGATCGCATCGCCA 100
.|||||||..||||||||.||.||||||||...|||.||.||.||.||..
BL00849___ydi 51 GATTTTAACGAATATAAAACTCGAAGTCAGGTCTCGGGACCGGATTGCGG 100
BSNT_01037___ 101 TTGTAGGAAGAAATGGCGCCGGAAAATCCACGCTCCTTAAAATTATCGCA 150
|.||.|||.|.||.||||||||||||||.||.||.||.||.|||||||||
BL00849___ydi 101 TCGTCGGACGCAACGGCGCCGGAAAATCGACTCTTCTAAAGATTATCGCA 150
BSNT_01037___ 151 GGCCAGCTTTCGTATGAGAAGGGCGAAATTATTAAACCGAAAGATATTAC 200
||..||||.||.||.||.|||||.||.||.||.|||||.||||||.|.||
BL00849___ydi 151 GGAAAGCTCTCATACGAAAAGGGGGACATCATCAAACCTAAAGATTTGAC 200
BSNT_01037___ 201 AATGGGATATCTCGCCCAGCATACTGGCTTGGATTCTAAGCTTACCATAA 250
.|||||.||.||.|.|||||||.|.|||.|.|||||.|||||.||..|.|
BL00849___ydi 201 GATGGGCTACCTTGACCAGCATTCCGGCCTCGATTCCAAGCTGACGCTTA 250
BSNT_01037___ 251 AAGAAGAGCTGCTGACTGTTTTTGA-CCACTTAAAAGCAATGGAAAAGGA 299
||||.||..|||||.|.||.||||| ...||||||| .|||||||||.||
BL00849___ydi 251 AAGAGGAATTGCTGTCGGTATTTGATTTTCTTAAAA-AAATGGAAAAAGA 299
BSNT_01037___ 300 AATGCGGGCTATGGAAGAAAAAATGGCGGCAGCTGCCCCGG------GTG 343
||||||.||.||.||.|||||.||||||..|||.|..|||| .||
BL00849___ydi 300 AATGCGCGCGATCGAGGAAAAGATGGCGCAAGCCGGACCGGACAAGCTTG 349
BSNT_01037___ 344 AATTAGAAAGCA-TCATGAAAACCTACGACCGCCTTCAGCAGGAATTCAA 392
||| || |.|||||.||.||.|||.|.|||||||||||.|||||
BL00849___ydi 350 AAT-------CATTAATGAAGACATATGACAGGCTTCAGCAGGAGTTCAA 392
BSNT_01037___ 393 AGATAAAGGCGGCTATCAATATGAAGCGGATGTTAGATCTGTGCTGCATG 442
.||.|||||||||||.||||||||.||.||.||.|||||.||..||||.|
BL00849___ydi 393 GGACAAAGGCGGCTACCAATATGAGGCAGAGGTCAGATCCGTCATGCACG 442
BSNT_01037___ 443 GTCTCGGCTTCAGCCAT------TTTGACGATTC--TACACAGGTTCAAA 484
|.|||||||| | ||||||||.|| |.|.| |||||..
BL00849___ydi 443 GGCTCGGCTT------TGCGGGATTTGACGACTCCGTCCGC--GTTCAGG 484
BSNT_01037___ 485 GCCTCAGCGGAGGCCAGAAAACAAGACTGGCTTTAGGTAAGCTTCTGTTA 534
...|.|||||||||||.|||||||||||.||..|.||.||..|.||.||.
BL00849___ydi 485 ATTTAAGCGGAGGCCAAAAAACAAGACTTGCCCTCGGAAAAATGCTTTTG 534
BSNT_01037___ 535 ACACAGCCTGATTTGCTCATTCTCGATGAGCCGACAAACCATCTGGATAT 584
|||.|.||.||..|.||||||.|.||.||.|||||||||||..|||||||
BL00849___ydi 535 ACAAAACCCGACCTCCTCATTTTGGACGAACCGACAAACCACTTGGATAT 584
BSNT_01037___ 585 TGATACGCTTACCTGGCTTGAGCATTTTTTGCAAGGCTATTCA--GGCGC 632
.||.||.||.||.|||||.||.||.|.|||||||.|||| || ||.||
BL00849___ydi 585 CGACACCCTGACATGGCTCGAACAATATTTGCAAAGCTA--CAGCGGAGC 632
BSNT_01037___ 633 CATCCTCATCGTATCGCATGACCGCTACTTTTTGGACAAAGTAGTAAACC 682
.||..|.|||||.||.||||||.|.||||||.|.||||||||.||.|.||
BL00849___ydi 633 GATTTTAATCGTTTCCCATGACAGGTACTTTCTTGACAAAGTGGTTACCC 682
BSNT_01037___ 683 AGGTATACGAGGTATCAAGAGCAGAAAGCAAAAAGTATCACGGCAACTAC 732
|.||.||||||.|..|.||..|..||||||||||.|||..|||.||||||
BL00849___ydi 683 AAGTTTACGAGATTACCAGGTCCCAAAGCAAAAAATATATCGGGAACTAC 732
BSNT_01037___ 733 AGCGCTTATCTCGATCAAAAAGCCGCGCAGTATGAAAAAGATCTGAAA-- 780
|||.||||||||.|...||||||||.|||| .||.|||.| ||||
BL00849___ydi 733 AGCTCTTATCTCCAATTAAAAGCCGAGCAG-CTGGAAAGG----GAAACA 777
BSNT_01037___ 781 ---ATGTATGAAAAGCAGCAGGACGAAATTGCAAAGCTGCAGGACTTCGT 827
.|.||.||||||||||||||||||||.||.|||||||||||.|||||
BL00849___ydi 778 AAGCTTTACGAAAAGCAGCAGGACGAAATCGCCAAGCTGCAGGATTTCGT 827
BSNT_01037___ 828 AGACCGAAATCTGGCGAGAGCCTCTACCACCAAAAGGGCGCAAAGCCGCA 877
.||.||.||..||||.||.||.||.||.||.|||.|||||||.|||.|..
BL00849___ydi 828 CGATCGGAACTTGGCAAGGGCTTCGACGACGAAACGGGCGCAGAGCAGAC 877
BSNT_01037___ 878 GAAAGCAGCTGGAGCGAATGGAAGTCATGTCAAAACCGCTTGGCGATGAA 927
||||||||||.||.||.|||||..|||||...|||||||||||.||||||
BL00849___ydi 878 GAAAGCAGCTTGAACGGATGGAGATCATGGACAAACCGCTTGGAGATGAA 927
BSNT_01037___ 928 AAATCCGCAAACTTTCAT-----TTTGATATTACAAAACAGAGCGGAAAT 972
||.||.|| .|||| |||||.|||||||..||.||||||||.
BL00849___ydi 928 AAGTCGGC-----GTCATTCCGCTTTGAAATTACAAGGCAAAGCGGAAAC 972
BSNT_01037___ 973 GAAGTCCTTCGTGTTCATGATCTCACAATCAGCTATGAAAACCAGCCGCC 1022
||.||.||.||.||..|.||.||.||..|.||||||.|..|||||||.||
BL00849___ydi 973 GATGTACTGCGAGTGGAAGACCTGACGGTAAGCTATCAGGACCAGCCCCC 1022
BSNT_01037___ 1023 GCTT-----TTAACAGAAGTGT--CATTCATGCTCACAAGAGGAGAAAGC 1065
|||| ||.||.|.|.|.| |||| ||..|.||.||||||
BL00849___ydi 1023 GCTTCTCCGTTCACTGGATTTTCGCATT-------ACCCGCGGGGAAAGC 1065
BSNT_01037___ 1066 GCAGCGCTTGTCGGCCCTAACGGAATTGGTAAATCGACATTGCTGAAAAC 1115
|..||.||.|||||.||.||||||||.||.||.|||||..|..|||||.|
BL00849___ydi 1066 GTTGCACTAGTCGGGCCGAACGGAATCGGCAAGTCGACCCTTTTGAAAGC 1115
BSNT_01037___ 1116 ATTAATAGACACCCTAAAAC--CAG-----ATCAAGGAACGAT------- 1151
|||.|| ||.|||.| ||| .|| .|||||.||
BL00849___ydi 1116 ATTGAT------CCAAAAGCTGCAGCCGGTGTC-GGGAACAATCGCGACG 1158
BSNT_01037___ 1152 --CTCATACGGCTCAAATGTCAGTGTCGGCTATTATGATCAGGAACAGGC 1199
|||..|||.||||| ||||.||.||.||.|||||||||||
BL00849___ydi 1159 GGCTCTCACGTCTCAA---------TCGGATACTACGACCAGGAACAGGC 1199
BSNT_01037___ 1200 AGAGCTGACTTCCTCTAAACGTGTCCTTGATGAGCTGTGGGACGAGTACC 1249
.||..||||.||.||.|||||.||.|||||.|||||.||||||||.||.|
BL00849___ydi 1200 TGAATTGACGTCGTCAAAACGCGTGCTTGACGAGCTTTGGGACGATTATC 1249
BSNT_01037___ 1250 CCGGGCTCCCAGAAAAAGAAATCAGAACGTGTCTCGGAAATTTCTTATTC 1299
|.|.|.|....|||||.||.|||||.||.||.|||||.||.|||||.|||
BL00849___ydi 1250 CGGAGATGAATGAAAAGGATATCAGGACCTGCCTCGGCAACTTCTTGTTC 1299
BSNT_01037___ 1300 TCCGGAGATGATGTGCTGAAACCAGTTCATTCACTGAGCGGAGGCGAAAA 1349
||.|||||.|||||..|.||.||.||.|||.||.|.|||||.||||||||
BL00849___ydi 1300 TCGGGAGAAGATGTATTAAAGCCTGTACATGCATTAAGCGGTGGCGAAAA 1349
BSNT_01037___ 1350 AGCAAGATTGGCTCTAGCTAAGCTGATGCTTCAAAAAGCCAACTTTCTCA 1399
|||.||..|.||.||.||.|||||||||.|.||||||||.|||||.||.|
BL00849___ydi 1350 AGCCAGGCTTGCCCTCGCCAAGCTGATGTTGCAAAAAGCGAACTTCCTTA 1399
BSNT_01037___ 1400 TCCTTGATGAACCGACTAACCATCTGGATTTAGACAGCAAAGAAGTTCTC 1449
|.||||||||.|||||.||||||||.||..|.||||||||.|||||..|.
BL00849___ydi 1400 TTCTTGATGAGCCGACAAACCATCTCGACCTGGACAGCAAGGAAGTCTTG 1449
BSNT_01037___ 1450 GAAAACGCGCTGATTGATTATCCAGGCACACTGTTATTTGTCTCACATGA 1499
||.|||||..|.||.|||||.||.||.||..|.||||||||.||.|||||
BL00849___ydi 1450 GAGAACGCTTTAATCGATTACCCGGGAACGATATTATTTGTGTCCCATGA 1499
BSNT_01037___ 1500 CAGATATTTTATTAACAGAATCGCCACAAGAGTATTGGAGCTTTCTTC-- 1547
|.|.||||||||.|||.|.||.||.||||.||||.|||||||||| ||
BL00849___ydi 1500 CCGCTATTTTATCAACCGGATTGCGACAAAAGTACTGGAGCTTTC-TCGC 1548
BSNT_01037___ 1548 ----AAGCCATATAGAGGAGTATCTGGGAGATTACGATTATTATACAGAG 1593
||||| ||.||.|||.|.||.||.|||||||||||.||.||.
BL00849___ydi 1549 GACAAAGCC-----GAAGAATATTTAGGCGACTACGATTATTACACGGAA 1593
BSNT_01037___ 1594 AAAAAAACAGAGCAGCTTGAATTGGAGAAAATAAATCAGCAAGAAGAAAC 1643
||||||.|..|||||||||||.|| |||.|| |.|||| ||||
BL00849___ydi 1594 AAAAAAGCGCAGCAGCTTGAACTG----AAAGAA-----CTAGAA-AAAC 1633
BSNT_01037___ 1644 TGA---AAAAACGCCA-------GCTACTGTGAAGTCTGACTCCAAACGT 1683
.|| ||.|.||.|| |||.|.|..||..|.|.|.|.|||...
BL00849___ydi 1634 AGACGGAAGAGCGTCAGAAAGCCGCTTCCGAAAAACCGGGCGCAAAAAAG 1683
BSNT_01037___ 1684 TCCTACGAGGAAGAAAAAGAATGGAAAAAGAAAGAGCGCCAACGACTCCG 1733
..|||.||.|||||||||||...|||||..|||||.|||||.||.|..||
BL00849___ydi 1684 AGCTATGAAGAAGAAAAAGAGCTGAAAAGAAAAGAACGCCAGCGGCAGCG 1733
BSNT_01037___ 1734 TCGGATTGAAGAAATTGAAACCACCGTTCAAACCATTGAGGAGAACA--- 1780
..||||||||||.||.|||||.|...||....||||||| ||||||
BL00849___ydi 1734 CAGGATTGAAGACATCGAAACAAGAATTACGGCCATTGA--AGAACAAAT 1781
BSNT_01037___ 1781 TCAGCCGCAATGATGAATTGCTATGTGACCCTGAAGTCTATCAGGATCAT 1830
|.|...| |||||.||..|.|||||..|.||.||.||||..||.||.||.
BL00849___ydi 1782 TGAAAAG-AATGAAGAGCTCCTATGCAATCCCGACGTCTTCCAAGACCAC 1830
BSNT_01037___ 1831 GAAAAAGTACAAGCTATCCATGCAGACAATGAGAAGCTCAATCAGGAGCT 1880
||.||.||.||.|..|||||..|.||.|||||..||||.|||.|||||||
BL00849___ydi 1831 GAGAAGGTTCAGGAAATCCACTCTGAAAATGAACAGCTGAATGAGGAGCT 1880
BSNT_01037___ 1881 GGAATCTCTTTTGTCCGAATGGGAAGAACTATCCACAGAAGAAGATTAA 1929
.|||...||.||.||.|||||||||..||||||.|||.|.||| |||
BL00849___ydi 1881 TGAACAGCTGTTATCAGAATGGGAAACACTATCTACAAATGAA---TAA 1926
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