Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04952 and BL00836
See
Amino acid alignment /
Visit
BSNT_04952 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04952___yvrI.1.5803.seq
# -bsequence dna-align/BL00836___yvrI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04952___yvrI-BL00836___yvrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04952___yvrI-BL00836___yvrI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04952___yvrI
# 2: BL00836___yvrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity: 393/693 (56.7%)
# Similarity: 393/693 (56.7%)
# Gaps: 165/693 (23.8%)
# Score: 1058.5
#
#
#=======================================
BSNT_04952___ 1 ATGGACT-ATCAAAGTCTTT--TACG-GTCAAAATGTAAGGAGATAATGA 46
|| ||.| |||||| |.|| |.|| |..||||| .||||||||.|..|
BL00836___yvr 1 AT-GATTGATCAAA--CGTTACTGCGTGCGAAAAT-CAAGGAGATCACAA 46
BSNT_04952___ 47 AGCATCCCATCGTGAAGCATTTTTTGAGCAATCCTCAGCATTACCGTTTG 96
.||||||..|.||||||||||||||||||||.||...|.||.|.||..|.
BL00836___yvr 47 GGCATCCGCTTGTGAAGCATTTTTTGAGCAACCCAAGGTATGAGCGGCTT 96
BSNT_04952___ 97 TTCAAAAACGTAATGGAA-AGCC-----CTAACGAAAAAGATGCAAA--- 137
|||||..||||..||||| |.|| || .||||.|||.|
BL00836___yvr 97 TTCAACCACGTGTTGGAACATCCGGATTCT------GAAGAGGCAGAGTG 140
BSNT_04952___ 138 -----ATCATTGGACGAGCTATTTAAGCAGTTTTATAAAGAAATCCGCAT 182
|||.| || ||||||||..|||||.|||.||||||||||
BL00836___yvr 141 TCTCGATCGT-----GA---ATTTAAGCGATTTTACAAAAAAATCCGCAT 182
BSNT_04952___ 183 CGTCAAGTATATGAATTCAATGATTCGCATCTTTTCTATTGATTTTGATA 232
..||||.||.||.||.||.|||||.||.||.||.||..|.||.|||||||
BL00836___yvr 183 GATCAAATACATCAACTCGATGATCCGGATTTTCTCCGTCGACTTTGATA 232
BSNT_04952___ 233 AGCGGGTTCGCAAAAACCAAAAACGGTATCCGCTGACGGTTGATC----- 277
|..|.||.||.|||||||.|.|.||.|.|||..||| |||||
BL00836___yvr 233 AAAGAGTCCGGAAAAACCGAGAGCGTTTTCCATTGA----TGATCGACGA 278
BSNT_04952___ 278 --------AT---CCGGAGGCGGGAGATCGGCTTCCTTCCGA----AACA 312
|| ||.|||.|| || |||| |.|.
BL00836___yvr 279 CAGTCCGAATCTGCCCGAGCCG------------CC--CCGAGGGGATCT 314
BSNT_04952___ 313 GGTAG-CGATGCATTTGAAGAATTTTTAGACAGGCAGGATGATTTGAGCC 361
|.||| |||||..||.|| ||||| |.||.||.||.|||.
BL00836___yvr 315 GTTAGACGATGTCTTGGA-----------ACAGG-AAGAGGAATTAAGCG 352
BSNT_04952___ 362 AGCATGTACAGGATTACC---AGCTCTACCAAGCGATCCAGAAGCTGACT 408
|.||..|.||.| ||| .|||.||..|||||.|...|.|..||||.
BL00836___yvr 353 AACACCTGCAAG---ACCCGATGCTTTATGAAGCGTTTTTGCAATTGACG 399
BSNT_04952___ 409 GACAA--ACAAAAAAGTG--TGCTGACGAAAGTCTATCTTCACGGTGCCA 454
||||| |.||||||||| ||| || ||.|.|||.||||.||.|...
BL00836___yvr 400 GACAAGCAGAAAAAAGTGCTTGC--AC--AAATTTATATTCATGGGGTAT 445
BSNT_04952___ 455 CGATGCAGGAGATTGCAGATTCATTAGGGGAGTCCCGACAAAACATTTCC 504
|.||||||||.|||||.||.||.||.||.||.||..|.|||||.|||||.
BL00836___yvr 446 CCATGCAGGAAATTGCTGACTCTTTGGGAGAATCAAGGCAAAATATTTCA 495
BSNT_04952___ 505 AACATTCATAAAAAGGGGCTGGAGAATATCAGAAAGCAGCTAGCGGCGCA 554
||.||||||||||.||..||.||.||.||.|||.|||.||| .
BL00836___yvr 496 AAAATTCATAAAAGGGCACTCGAAAAGATAAGAGAGCTGCT--------G 537
BSNT_04952___ 555 AA----AAAG----GGGGAAAAGTAAGCTGTGGACGGCCAGTTTGAACAA 596
|| |||| ||||||...||| |.||| |||.||.||.|
BL00836___yvr 538 AATTCTAAAGCAGAGGGGAATGATAA-CAGTG-------AGTCTGCACGA 579
BSNT_04952___ 597 AAAAAGAAACAAAAAGACGAGACTTATGACATTGAGCATCTGA 639
..|
BL00836___yvr 580 TGA---------------------------------------- 582
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.