Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04952 and BL00836

See Amino acid alignment / Visit BSNT_04952 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04952___yvrI.1.5803.seq
#    -bsequence dna-align/BL00836___yvrI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04952___yvrI-BL00836___yvrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04952___yvrI-BL00836___yvrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04952___yvrI
# 2: BL00836___yvrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity:     393/693 (56.7%)
# Similarity:   393/693 (56.7%)
# Gaps:         165/693 (23.8%)
# Score: 1058.5
# 
#
#=======================================

BSNT_04952___      1 ATGGACT-ATCAAAGTCTTT--TACG-GTCAAAATGTAAGGAGATAATGA     46
                     || ||.| ||||||  |.||  |.|| |..||||| .||||||||.|..|
BL00836___yvr      1 AT-GATTGATCAAA--CGTTACTGCGTGCGAAAAT-CAAGGAGATCACAA     46

BSNT_04952___     47 AGCATCCCATCGTGAAGCATTTTTTGAGCAATCCTCAGCATTACCGTTTG     96
                     .||||||..|.||||||||||||||||||||.||...|.||.|.||..|.
BL00836___yvr     47 GGCATCCGCTTGTGAAGCATTTTTTGAGCAACCCAAGGTATGAGCGGCTT     96

BSNT_04952___     97 TTCAAAAACGTAATGGAA-AGCC-----CTAACGAAAAAGATGCAAA---    137
                     |||||..||||..||||| |.||     ||      .||||.|||.|   
BL00836___yvr     97 TTCAACCACGTGTTGGAACATCCGGATTCT------GAAGAGGCAGAGTG    140

BSNT_04952___    138 -----ATCATTGGACGAGCTATTTAAGCAGTTTTATAAAGAAATCCGCAT    182
                          |||.|     ||   ||||||||..|||||.|||.||||||||||
BL00836___yvr    141 TCTCGATCGT-----GA---ATTTAAGCGATTTTACAAAAAAATCCGCAT    182

BSNT_04952___    183 CGTCAAGTATATGAATTCAATGATTCGCATCTTTTCTATTGATTTTGATA    232
                     ..||||.||.||.||.||.|||||.||.||.||.||..|.||.|||||||
BL00836___yvr    183 GATCAAATACATCAACTCGATGATCCGGATTTTCTCCGTCGACTTTGATA    232

BSNT_04952___    233 AGCGGGTTCGCAAAAACCAAAAACGGTATCCGCTGACGGTTGATC-----    277
                     |..|.||.||.|||||||.|.|.||.|.|||..|||    |||||     
BL00836___yvr    233 AAAGAGTCCGGAAAAACCGAGAGCGTTTTCCATTGA----TGATCGACGA    278

BSNT_04952___    278 --------AT---CCGGAGGCGGGAGATCGGCTTCCTTCCGA----AACA    312
                             ||   ||.|||.||            ||  ||||    |.|.
BL00836___yvr    279 CAGTCCGAATCTGCCCGAGCCG------------CC--CCGAGGGGATCT    314

BSNT_04952___    313 GGTAG-CGATGCATTTGAAGAATTTTTAGACAGGCAGGATGATTTGAGCC    361
                     |.||| |||||..||.||           ||||| |.||.||.||.|||.
BL00836___yvr    315 GTTAGACGATGTCTTGGA-----------ACAGG-AAGAGGAATTAAGCG    352

BSNT_04952___    362 AGCATGTACAGGATTACC---AGCTCTACCAAGCGATCCAGAAGCTGACT    408
                     |.||..|.||.|   |||   .|||.||..|||||.|...|.|..||||.
BL00836___yvr    353 AACACCTGCAAG---ACCCGATGCTTTATGAAGCGTTTTTGCAATTGACG    399

BSNT_04952___    409 GACAA--ACAAAAAAGTG--TGCTGACGAAAGTCTATCTTCACGGTGCCA    454
                     |||||  |.|||||||||  |||  ||  ||.|.|||.||||.||.|...
BL00836___yvr    400 GACAAGCAGAAAAAAGTGCTTGC--AC--AAATTTATATTCATGGGGTAT    445

BSNT_04952___    455 CGATGCAGGAGATTGCAGATTCATTAGGGGAGTCCCGACAAAACATTTCC    504
                     |.||||||||.|||||.||.||.||.||.||.||..|.|||||.|||||.
BL00836___yvr    446 CCATGCAGGAAATTGCTGACTCTTTGGGAGAATCAAGGCAAAATATTTCA    495

BSNT_04952___    505 AACATTCATAAAAAGGGGCTGGAGAATATCAGAAAGCAGCTAGCGGCGCA    554
                     ||.||||||||||.||..||.||.||.||.|||.|||.|||        .
BL00836___yvr    496 AAAATTCATAAAAGGGCACTCGAAAAGATAAGAGAGCTGCT--------G    537

BSNT_04952___    555 AA----AAAG----GGGGAAAAGTAAGCTGTGGACGGCCAGTTTGAACAA    596
                     ||    ||||    ||||||...||| |.|||       |||.||.||.|
BL00836___yvr    538 AATTCTAAAGCAGAGGGGAATGATAA-CAGTG-------AGTCTGCACGA    579

BSNT_04952___    597 AAAAAGAAACAAAAAGACGAGACTTATGACATTGAGCATCTGA    639
                     ..|                                        
BL00836___yvr    580 TGA----------------------------------------    582


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