Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04957 and BL00822
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04957___yvrL.1.5803.seq
# -bsequence dna-align/BL00822___yvrL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04957___yvrL-BL00822___yvrL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04957___yvrL-BL00822___yvrL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04957___yvrL
# 2: BL00822___yvrL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 448
# Identity: 218/448 (48.7%)
# Similarity: 218/448 (48.7%)
# Gaps: 161/448 (35.9%)
# Score: 408.5
#
#
#=======================================
BSNT_04957___ 1 ---------TTGACCTATTTTGCTGTCATCT---ATATATT-GTTTT--- 34
|| |.|..||||||| |||.| .|||||| |||||
BL00822___yvr 1 ATGAAACATTT--CATTATTTGCTG-CATATCGGTTATATTCGTTTTTTT 47
BSNT_04957___ 35 ------CTTTAGCGGGA--------------------ACGAGC------T 52
||||..|||.| .||.|| |
BL00822___yvr 48 CGCCCACTTTCTCGGCATTTCGATCCTGTTTCATCTGTCGGGCGCGTTTT 97
BSNT_04957___ 53 ACCGCTCAG-CAGCTCATGTCCTGCTTTTTGCCGTGGTATTTCTTGTTCT 101
|||...||| |.|.|||| |.|||||.|||.|..| |||||.|
BL00822___yvr 98 ACCAAACAGTCGGATCAT-TGCTGCTGTTTACGCT--------TTGTTAT 138
BSNT_04957___ 102 --CGGATTATGCTTT------GAACCATTTGAAAGGCTGATGATACATAG 143
||||.|...|||| |||||...|||||.|.||.|.||.||.||
BL00822___yvr 139 ACCGGACTGACCTTTGTCCTGGAACCGGCTGAAAAGGTGCTCATCCACAG 188
BSNT_04957___ 144 TTTTA----------CATTTTTCAA--GACAGGAAAAC-GTCTATTCATT 180
|.|.| || |||| |.| |||..|| ||.|
BL00822___yvr 189 TATGAAACTGCTGGGCA----TCAATCGGC-GGATCACGGTTT------- 226
BSNT_04957___ 181 CTCCTTGCCGGC-------ATCGTAC-AGCTGCTGTTTTTGTGGATGACT 222
||||| || ||| || |.|.|.|||||.|| |.|.
BL00822___yvr 227 ----TTGCC-GCTGAAATGATC--ACGATCGGATGTTTATG-----GGCC 264
BSNT_04957___ 223 GC---TCATACAACAGACCAATTGATCAGCGAC-ATCTGGCTGTCCACCA 268
|| |.||||..|.|||.|||||.|...|||| .||| ||||.|.|||.
BL00822___yvr 265 GCCATTTATACCGCGGACGAATTGCTGGACGACGTTCT-GCTGACAACCT 313
BSNT_04957___ 269 CAGAAGAA---ATGATTGTCGCAGCCGTTTTTTTGATTTTAGACAAATG- 314
|.|..||| |||||| |||||||..|| |||| ||||.||
BL00822___yvr 314 CGGCGGAAATCATGATT------GCCGTTTCGTT--TTTT--ACAATTGA 353
BSNT_04957___ 315 -CAACTCGGCTCT-TCC----CAG--------------CTAA------ 336
.||.|| ||.| ||| ||| ||.|
BL00822___yvr 354 TAAAATC--CTTTATCCGCGGCAGAGGTCCGGTTCGCTCTTATATTGA 399
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