Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05005 and BL00819
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_05005___yvaA.1.5803.seq
# -bsequence dna-align/BL00819___yvaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05005___yvaA-BL00819___yvaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05005___yvaA-BL00819___yvaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05005___yvaA
# 2: BL00819___yvaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity: 742/1145 (64.8%)
# Similarity: 742/1145 (64.8%)
# Gaps: 163/1145 (14.2%)
# Score: 2311.5
#
#
#=======================================
BSNT_05005___ 1 TTGATAACGCTTTTAAAGGGGAGAAGAAAAGTGGATACGATCAAGGTT-- 48
|..||||| |||||||
BL00819___yva 1 ---------------------------ATGGTGGA------CAAGGTTCG 17
BSNT_05005___ 49 ----GGAATATTAGGATACGGATTGTCCGGTTCTGTTTTTCACGGGCCGC 94
||.||||||||||||||.|||||||||||.||.|||||.|.|||..
BL00819___yva 18 CACAGGGATATTAGGATACGGTTTGTCCGGTTCGGTGTTTCATGCGCCTT 67
BSNT_05005___ 95 TGCTGGAT--GTTCTGGATGAATATCAAATCAGCAAAATCATGACATCTC 142
|..| || ||..|.||.||.|||.|.||..|.||..|.|||||.||..
BL00819___yva 68 TATT--ATCAGTGTTAGAAGATTATGAGATTCGAAAGGTTATGACTTCAA 115
BSNT_05005___ 143 GGACAGAAGAAGTGAAACGGGACTTTCCAGATGCTGA---GGT-TGTACA 188
|||.||||.||||.||||.||||.|.||.||.||.|| ||| .||||
BL00819___yva 116 GGAAAGAACAAGTCAAACAGGACCTCCCCGAAGCAGAAGCGGTCAGTAC- 164
BSNT_05005___ 189 TGAGCTTGAGGAAATCACAAATGACCCTGCCATTGAGCTTGTCATTGTCA 238
|.|.||.||.||||||||.||.||.|.||||||.||.|||||.||.|
BL00819___yva 165 ---GATCGAAGACATCACAAAAGATCCGGACATTGATCTCGTCATCGTGA 211
BSNT_05005___ 239 CCACCCCGAGCGGCCTTCATTACGAGCATGCTATGGC------ATGCATA 282
||||.|||||||||||||||||||| .||||| .|||||.
BL00819___yva 212 CCACGCCGAGCGGCCTTCATTACGA------AATGGCGAAAGAGTGCATC 255
BSNT_05005___ 283 CAGGCCGGAAAACATGTTGTGATGGAAAAACCAATGACAGCAACAGCCGA 332
|..||||||||.|||||.||..|.|||||.||.||||||||||||||.||
BL00819___yva 256 CGCGCCGGAAAGCATGTCGTTCTTGAAAAGCCGATGACAGCAACAGCGGA 305
BSNT_05005___ 333 AGAGGGGGAA----ACATTAAAAAGGGCTGCCG---ATGAAAAAGGCGTA 375
|||.|.|||| .|||||| ||||| |.|||||||||||.
BL00819___yva 306 AGAAGCGGAAGAGCTCATTAA-------TGCCGCGAAAGAAAAAGGCGTG 348
BSNT_05005___ 376 TTATTAAGCGTATATCATAACCGACGCTGGGATAACGACTTTTTAACGAT 425
.|..|.|||||.|||||.||||||.|.|||||||||||||||||.|||||
BL00819___yva 349 CTTCTCAGCGTGTATCACAACCGAAGATGGGATAACGACTTTTTGACGAT 398
BSNT_05005___ 426 TAAAAAGCTGATCTCTGAGGGATCTCTTGAAGATATCAATACATATCAAG 475
.|||.||||.|||...|||||....||||.|||..||||.||||..||.|
BL00819___yva 399 CAAACAGCTCATCAAAGAGGGGCGCCTTGGAGAGGTCAACACATTCCACG 448
BSNT_05005___ 476 TTTCCTATGACCGCTACAGACCTGAAGTTCA---AGCGCGGTGGCGGGAA 522
..|||||.|||||.|.|.|.|| |||..||| ||||| |||.|.|||
BL00819___yva 449 CCTCCTACGACCGGTTCCGGCC-GAATGTCAGACAGCGC--TGGAGAGAA 495
BSNT_05005___ 523 ---AAAGAA---GGCATTGCCACTGGTACGCTGTATGATCTCGGCTCCCA 566
||||.| || |.|| |||.|.|||||.|||.|.||.||.||
BL00819___yva 496 CAGAAAGGACCGGG----GTCA--GGTGCACTGTACGATTTAGGTTCACA 539
BSNT_05005___ 567 CATCATAGACCAAACCCTGCATTTGTTTGGGATGCCTAAAGCCGTGACTG 616
|.|.||.||.||..|.||.|||||.||.||.|||||.||.|.|||.||.|
BL00819___yva 540 CTTGATCGATCAGGCGCTTCATTTATTCGGCATGCCGAACGGCGTCACCG 589
BSNT_05005___ 617 CAAACGTGATGGCCCAGCGGGAAAATGCCGAAACGGTTGACTATTTTCAT 666
|..|.||||..||.|||.|.|..|||||.|||||.|..||.||.||.|||
BL00819___yva 590 CTCAAGTGACCGCTCAGAGAGCCAATGCGGAAACAGACGATTACTTCCAT 639
BSNT_05005___ 667 TTAACCCTGGACTATGGCAAGCTTCAAGCCATTCTATACGGGGGATCAAT 716
.|.|.|||..||||||...|||..||||..|||||..||..|||.||.||
BL00819___yva 640 GTCATCCTTCACTATGATCAGCGCCAAGTGATTCTCCACTCGGGCTCGAT 689
BSNT_05005___ 717 CGTTCCGGCAAACGGACCTCGTTATCAAATCCATGG----AAAAGATTCC 762
.||||||||.|||||.||.||.||.||||||||.|| |||.||
BL00819___yva 690 TGTTCCGGCCAACGGCCCCCGCTACCAAATCCACGGCTCAAAAGGA---- 735
BSNT_05005___ 763 AGCTTTATCAAATACGGAATTGACGGACAGGAAGACGCACTCAGAGCGGG 812
||||||||.|||||||||||.|||||.|||||.||.||||||||||||||
BL00819___yva 736 AGCTTTATTAAATACGGAATCGACGGCCAGGAGGATGCACTCAGAGCGGG 785
BSNT_05005___ 813 AAGAAAAC---CAGAGGATGACAGCTGGGGTGCAGATGATCCGGAGTTTT 859
....|||| |||..||||| .|||||.||.|||.|.||.||.|.||
BL00819___yva 786 TCATAAACCTGCAGGCGATGA---GTGGGGAGCCGATCAACCCGAATATT 832
BSNT_05005___ 860 ACGGACAGCTTACAACCATTCG-TGGC-------TCCGGCAAAAAAAC-- 899
||||..|.||..|.| ||.||| .||| ||.|| ||..||||
BL00819___yva 833 ACGGGGAACTGGCCA-CAGTCGAAGGCGACGAGATCAGG-AAGGAAACCG 880
BSNT_05005___ 900 -AGAAACGATCCCATCAGTAAATGGCTCCTACCTTACTTATTACCGCAAA 948
.||||||.|||| .||.||.|||.|.||||||||| |
BL00819___yva 881 TGGAAACGCTCCC---------GGGTTCATACTTAACTTATTAC-----A 916
BSNT_05005___ 949 A-----TAGCGGAAAGCATACGGGAAGGTGCTGC-GC-TGCCAGTCACTG 991
| |.||...|||.||.|..|||| ||.|| || ||||.|||||.|
BL00819___yva 917 AGCAGCTTGCTTCAAGTATTCTAGAAG--GCGGCAGCTTGCCTGTCACGG 964
BSNT_05005___ 992 CTGAGGAAGGTATTA----ATGTCATCCGCATCATTGAAGCCGCGATGAA 1037
|.||.||||| | |.||||||||.|||||.|||||.|||...||
BL00819___yva 965 CGGAAGAAGG----ACGCGACGTCATCCGAATCATCGAAGCTGCGCAAAA 1010
BSNT_05005___ 1038 AAGCAGTAAAGAGAAACGAACCA----TTATGCTGGAGC-ACTAA 1077
|||| ||.||||||||.|| .|.|.||..|.| |.|||
BL00819___yva 1011 AAGC-----AGCGAAACGAATCAAACGGTGTTCTTAAACAAATAA 1050
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