Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04589 and BL00812

See Amino acid alignment / Visit BSNT_04589 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04589___yulC.1.5803.seq
#    -bsequence dna-align/BL00812___yulC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04589___yulC-BL00812___yulC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04589___yulC-BL00812___yulC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04589___yulC
# 2: BL00812___yulC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1745
# Identity:     896/1745 (51.3%)
# Similarity:   896/1745 (51.3%)
# Gaps:         550/1745 (31.5%)
# Score: 1822.0
# 
#
#=======================================

BSNT_04589___      1 ---ATGATTTATACT-GCCATTGATATAGGCGCATCAAGCGGGAGA----     42
                        |.||||    || |||.|||||.|.||.||.||.|||||.|||    
BL00812___yul      1 GTGACGATT----CTCGCCTTTGATCTTGGTGCGTCGAGCGGCAGAGCTT     46

BSNT_04589___     43 AT-CATGGT-AGGTGAA-------CTGAATGAAGGGAAGCTTGACATACA     83
                     || || ||| |.|||.|       ||||...|||.|.||           
BL00812___yul     47 ATGCA-GGTCATGTGGACGGCGGTCTGATCAAAGCGGAG-----------     84

BSNT_04589___     84 AGAGATTCACAGGTTCGCTAACGGTTTCAG-----TCAAAGAGACGGG--    126
                      ||.||||||.|.||..|.||     ||||     ||    ||.||||  
BL00812___yul     85 -GAAATTCACCGTTTTCCAAA-----TCAGCCCGTTC----AGGCGGGAA    124

BSNT_04589___    127 ----CATTGCTTTTGGGATATTGATCA---TTTGCTAAAACAAATCCTGC    169
                         |.||  |.||||||.||| .|||   |||          |||.||.
BL00812___yul    125 AACACCTT--TATTGGGACATT-CTCAGGCTTT----------ATCATGA    161

BSNT_04589___    170 A-------AGGACTGCA----AAAAG-TAAAGACGCTTGGGTATGAA-CA    206
                     |       |||   |||    |||.| .|||.|||..||.|.|.||| ||
BL00812___yul    162 AATTAAACAGG---GCATTTTAAAGGCGAAAAACGGCTGTGGACGAATCA    208

BSNT_04589___    207 -CTGCACCGTAGGCATTGATACATGGGCAGTTGATTATGTC---TTACTG    252
                      |||||   |.||.||.|||.|||||||.||||   |.|||   ||.||.
BL00812___yul    209 GCTGCA---TCGGAATCGATTCATGGGCGGTTG---ACGTCGGTTTTCTC    252

BSNT_04589___    253 GA-CGAAAAAGGCGATCGGTTGCGGGAAGCAATCTC-CTACCGTGA----    296
                     || || .||.||.||.|.|.|| |||||.|..|.|| .|||||.||    
BL00812___yul    253 GATCG-GAACGGAGAGCTGATG-GGGAACCCTTATCATTACCGCGACCCT    300

BSNT_04589___    297 TAGAAGAACAGATCACACAATAGAC--------------AAACTGGAACA    332
                     ||.|.|.||.||    |.||| |||              |||..||||.|
BL00812___yul    301 TACACGGACGGA----ATAAT-GACGGAGGTGTTGAATGAAATCGGAAAA    345

BSNT_04589___    333 TACCCTCTCAAAAGCCGCAATTTATCAAAAAACAGGAATACAATTTCAGC    382
                             .||.|||.|    ||.|| .|.|||.||.||.||..||..||
BL00812___yul    346 --------GAAGAGCTG----TTTTC-CAGAACCGGTATTCAGCTTTTGC    382

BSNT_04589___    383 CTTTCAACACGATCTATCAATT--GTATGAGGAAGACCGTGA-------G    423
                     |.||||||||.||||.|||..|  |...|..|||.|..|.||       |
BL00812___yul    383 CGTTCAACACCATCTTTCAGCTCCGGGCGCTGAAAAAAGCGAATTCTCCG    432

BSNT_04589___    424 CTGCT-GATAAAGACAGACAAA--ATTATGATGATTCCTGATTATTTAGG    470
                     |||.| |||.|.| |.||||.|  ||||  |||||||||||||...|..|
BL00812___yul    433 CTGTTGGATTACG-CGGACACACTATTA--ATGATTCCTGATTTGCTGCG    479

BSNT_04589___    471 CTATTGTTTAACCGG-------AAAAGCTGTAACGGAAATCACAAATGCG    513
                     |||||.||||||.||       ||||||       |||.|.|||||||||
BL00812___yul    480 CTATTTTTTAACGGGCGAGAAAAAAAGC-------GAATTTACAAATGCG    522

BSNT_04589___    514 TCCACAACACAGCTTTT--------AAACGCCTCAACGGGAAATCTTG--    553
                     .|.|||||.|||||.||        |||||.||.|..||||    |||  
BL00812___yul    523 ACGACAACCCAGCTGTTCAACCCGAAAACGTCTGACTGGGA----TTGGG    568

BSNT_04589___    554 -----ATCCTGAATTGCTTGAAGCCGTGT-------CCGTTCAGGA----    587
                          |||             ||||.|.|       |||..||.||    
BL00812___yul    569 AGCTCATC-------------AGCCTTCTGGGGATCCCGGCCAAGATTTT    605

BSNT_04589___    588 ----------ACAGCAATTTGCCCCGCTGACTGAACCGGGGTG--TGAAC    625
                               |.|||||  .||||.|  .|..|||.|||||.|  ||   
BL00812___yul    606 TCCAAAAGATATAGCAA--AGCCCGG--AAGCGAAGCGGGGAGGCTG---    648

BSNT_04589___    626 TCGGGAAGCTAAGAAATGAGTGGTTCC--CGGATTATGATCT---CCCGG    670
                     ||          |.|||.||||  |.|  ||.|||   .|||   ||||.
BL00812___yul    649 TC----------GCAATCAGTG--TGCGGCGAATT---GTCTGTGCCCGC    683

BSNT_04589___    671 CGTGCAAGGTGATGACAGTC-GCAACACATGATACGGCCTCGGC------    713
                     |||.| .||||||..|.||| ||.| ||||||.|||||.||.||      
BL00812___yul    684 CGTAC-CGGTGATTGCCGTCGGCGA-ACATGACACGGCTTCTGCAGTTGT    731

BSNT_04589___    714 CGTCATTGCAGCGCCAGGAATAAATGATGGCTGGGCGTATATCAGCAGCG    763
                     ||.|||..|.||    .||  ||..||||.||..||.|||.|.|...|||
BL00812___yul    732 CGGCATCCCCGC----TGA--AACGGATGACTTTGCATATTTGATTTGCG    775

BSNT_04589___    764 GAACATGGTCGTTAATCGGGGTTGAAAACAAAACACCGATAATAACTGAT    813
                     |.||.||||||.|.|||||                        |||.||.
BL00812___yul    776 GCACCTGGTCGCTGATCGG------------------------AACCGAA    801

BSNT_04589___    814 CTT--------GCT--TTAGAAAAC--------------AACTATACAAA    839
                     |||        |||  |.|.|||||              ||.|.||||||
BL00812___yul    802 CTTGACGCTCCGCTGATGACAAAACAGGCGCTCGATTGGAATTTTACAAA    851

BSNT_04589___    840 TGAACGCGGCGCAAACAACACCATT-CGCTTTCTCAAAAACATTATCGGC    888
                     |||..||||.||...|..|| |||| ||.|||.|.|||||||||||.||.
BL00812___yul    852 TGAGGGCGGTGCCGGCGGCA-CATTCCGTTTTTTAAAAAACATTATGGGA    900

BSNT_04589___    889 ATGTGGGTGATACA-AGAAGTCAGAC---------AACAGTTACAAGCAG    928
                     .|||||.||.|.|| .|..|||||.|         ||.||.|...|.|||
BL00812___yul    901 TTGTGGCTGTTCCAGCGCTGTCAGGCGGATTGGGAAAAAGATGGGATCAG    950

BSNT_04589___    929 ATTACTCT-TTCCAGC----AGCTTG-CAGAAGAAGCCAAAAAAACAGAA    972
                           || |||.|||    |||||| || ||...|||..|.|..|||||
BL00812___yul    951 ------CTATTCGAGCGCCGAGCTTGTCA-AACTTGCCGGACAGTCAGAA    993

BSNT_04589___    973 CCATTC----CAGCAATTTATAAACTTAAAT----GATAAAC----GTTT   1010
                     .|||||    |.||..||.|               |||.|.|    ||||
BL00812___yul    994 GCATTCAGGTCGGCGGTTGA-----------CCCGGATGACCCGGTGTTT   1032

BSNT_04589___   1011 CCTGAATCCAGAAAACATGATAAAGGAAATACA-ACATTATTGCAG----   1055
                      ||.|||||.|...|.|||....|||..|| || |.|.||.|||.|    
BL00812___yul   1033 -CTCAATCCCGTCCATATGCCTGAGGCGAT-CAGAGAGTACTGCCGTGCA   1080

BSNT_04589___   1056 ----------AC-------AAACCCGCCAAAAGACTCCTCGCACTGCAGG   1088
                               ||       ||||.|.|..|.||| ||.|| |.||||..|
BL00812___yul   1081 GCAGGGCAGCACGTGCCGGAAACGCCCGGACAGA-TCATC-CGCTGCGTG   1128

BSNT_04589___   1089 C--GAACTTGCCTGCTGCATCTACAGCAATTTAGCC--ATCATCTATGCG   1134
                     |  |||  .||||  |||.|.||    |||   .||  .|||.||.||  
BL00812___yul   1129 CTGGAA--AGCCT--TGCGTTTA----AAT---ACCGGTTCACCTTTG--   1165

BSNT_04589___   1135 ATAGCCATCAAAGAGCTCGAAACAATCACAGAAAAACCGATCGAGCA---   1181
                               ||..|.|.|||||..|.||||.||||      ||..|   
BL00812___yul   1166 ----------AACGGATTGAAACCTTGACAGGAAAA------GAATATGA   1199

BSNT_04589___   1182 ---ATTTCATATCATCGGC-GGCGGAGCCCGGAATGATTTCTTAAAT---   1224
                        |.||||.||    ||| |||||||   |||     ||| .||||   
BL00812___yul   1200 CGGACTTCACAT----GGCGGGCGGAG---GGA-----TTC-GAAATGAA   1236

BSNT_04589___   1225 ---------CAATTAACGGCAGACATG-AGTG----GAAAAGCGGTATAT   1260
                              ||||..||||| || ||| |.||    ||||   .||||..
BL00812___yul   1237 CTGCTCTGCCAATACACGGC-GA-ATGTACTGTCCAGAAA---TGTATGG   1281

BSNT_04589___   1261 GCAGGGCCGATAGAGGCAACTGCCACCGGAAATCTT----TTGATGC---   1303
                     ||.||.|||..||||||||..||||.|||.||..||    |..|.||   
BL00812___yul   1282 GCTGGACCGTCAGAGGCAAGCGCCATCGGCAACATTGCCGTACAGGCCGT   1331

BSNT_04589___   1304 --------AAATGATTGCTGCCAAAGA-AGTCAAAGACATAAAAGAAGCC   1344
                             |.|||.||  ||    .|| |.|||.||          .|||
BL00812___yul   1332 CGCGCTCGACATGTTT--TG----GGATATTCAGAG----------CGCC   1365

BSNT_04589___   1345 CGGCAAGTCG-TCAGAAATTCCTTTCCGATCAAA----GTGTTTACACCT   1389
                     |||.||| || |||....|||||||||  |||||    ||.|.|  |||.
BL00812___yul   1366 CGGAAAG-CGATCAAGGCTTCCTTTCC--TCAAAAAACGTATGT--ACCG   1410

BSNT_04589___   1390 AAAGACATTGACAGAAGC------ACGATCATTC------------AGTC   1421
                     .||||    .||||||||      .||..|||.|            ||||
BL00812___yul   1411 GAAGA----TACAGAAGCGTGGGAGCGGGCATACCGCCGCTATACAAGTC   1456

BSNT_04589___   1422 A---TTTCAGCAAACTGTTT-----TGAAAGCGCTATCTAAATGA   1458
                     |   |.||.||  .|.|.||     |||                 
BL00812___yul   1457 AGATTCTCGGC--GCCGCTTCCCGCTGA-----------------   1482


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