Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04589 and BL00812
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_04589___yulC.1.5803.seq
# -bsequence dna-align/BL00812___yulC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04589___yulC-BL00812___yulC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04589___yulC-BL00812___yulC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04589___yulC
# 2: BL00812___yulC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1745
# Identity: 896/1745 (51.3%)
# Similarity: 896/1745 (51.3%)
# Gaps: 550/1745 (31.5%)
# Score: 1822.0
#
#
#=======================================
BSNT_04589___ 1 ---ATGATTTATACT-GCCATTGATATAGGCGCATCAAGCGGGAGA---- 42
|.|||| || |||.|||||.|.||.||.||.|||||.|||
BL00812___yul 1 GTGACGATT----CTCGCCTTTGATCTTGGTGCGTCGAGCGGCAGAGCTT 46
BSNT_04589___ 43 AT-CATGGT-AGGTGAA-------CTGAATGAAGGGAAGCTTGACATACA 83
|| || ||| |.|||.| ||||...|||.|.||
BL00812___yul 47 ATGCA-GGTCATGTGGACGGCGGTCTGATCAAAGCGGAG----------- 84
BSNT_04589___ 84 AGAGATTCACAGGTTCGCTAACGGTTTCAG-----TCAAAGAGACGGG-- 126
||.||||||.|.||..|.|| |||| || ||.||||
BL00812___yul 85 -GAAATTCACCGTTTTCCAAA-----TCAGCCCGTTC----AGGCGGGAA 124
BSNT_04589___ 127 ----CATTGCTTTTGGGATATTGATCA---TTTGCTAAAACAAATCCTGC 169
|.|| |.||||||.||| .||| ||| |||.||.
BL00812___yul 125 AACACCTT--TATTGGGACATT-CTCAGGCTTT----------ATCATGA 161
BSNT_04589___ 170 A-------AGGACTGCA----AAAAG-TAAAGACGCTTGGGTATGAA-CA 206
| ||| ||| |||.| .|||.|||..||.|.|.||| ||
BL00812___yul 162 AATTAAACAGG---GCATTTTAAAGGCGAAAAACGGCTGTGGACGAATCA 208
BSNT_04589___ 207 -CTGCACCGTAGGCATTGATACATGGGCAGTTGATTATGTC---TTACTG 252
||||| |.||.||.|||.|||||||.|||| |.||| ||.||.
BL00812___yul 209 GCTGCA---TCGGAATCGATTCATGGGCGGTTG---ACGTCGGTTTTCTC 252
BSNT_04589___ 253 GA-CGAAAAAGGCGATCGGTTGCGGGAAGCAATCTC-CTACCGTGA---- 296
|| || .||.||.||.|.|.|| |||||.|..|.|| .|||||.||
BL00812___yul 253 GATCG-GAACGGAGAGCTGATG-GGGAACCCTTATCATTACCGCGACCCT 300
BSNT_04589___ 297 TAGAAGAACAGATCACACAATAGAC--------------AAACTGGAACA 332
||.|.|.||.|| |.||| ||| |||..||||.|
BL00812___yul 301 TACACGGACGGA----ATAAT-GACGGAGGTGTTGAATGAAATCGGAAAA 345
BSNT_04589___ 333 TACCCTCTCAAAAGCCGCAATTTATCAAAAAACAGGAATACAATTTCAGC 382
.||.|||.| ||.|| .|.|||.||.||.||..||..||
BL00812___yul 346 --------GAAGAGCTG----TTTTC-CAGAACCGGTATTCAGCTTTTGC 382
BSNT_04589___ 383 CTTTCAACACGATCTATCAATT--GTATGAGGAAGACCGTGA-------G 423
|.||||||||.||||.|||..| |...|..|||.|..|.|| |
BL00812___yul 383 CGTTCAACACCATCTTTCAGCTCCGGGCGCTGAAAAAAGCGAATTCTCCG 432
BSNT_04589___ 424 CTGCT-GATAAAGACAGACAAA--ATTATGATGATTCCTGATTATTTAGG 470
|||.| |||.|.| |.||||.| |||| |||||||||||||...|..|
BL00812___yul 433 CTGTTGGATTACG-CGGACACACTATTA--ATGATTCCTGATTTGCTGCG 479
BSNT_04589___ 471 CTATTGTTTAACCGG-------AAAAGCTGTAACGGAAATCACAAATGCG 513
|||||.||||||.|| |||||| |||.|.|||||||||
BL00812___yul 480 CTATTTTTTAACGGGCGAGAAAAAAAGC-------GAATTTACAAATGCG 522
BSNT_04589___ 514 TCCACAACACAGCTTTT--------AAACGCCTCAACGGGAAATCTTG-- 553
.|.|||||.|||||.|| |||||.||.|..|||| |||
BL00812___yul 523 ACGACAACCCAGCTGTTCAACCCGAAAACGTCTGACTGGGA----TTGGG 568
BSNT_04589___ 554 -----ATCCTGAATTGCTTGAAGCCGTGT-------CCGTTCAGGA---- 587
||| ||||.|.| |||..||.||
BL00812___yul 569 AGCTCATC-------------AGCCTTCTGGGGATCCCGGCCAAGATTTT 605
BSNT_04589___ 588 ----------ACAGCAATTTGCCCCGCTGACTGAACCGGGGTG--TGAAC 625
|.||||| .||||.| .|..|||.|||||.| ||
BL00812___yul 606 TCCAAAAGATATAGCAA--AGCCCGG--AAGCGAAGCGGGGAGGCTG--- 648
BSNT_04589___ 626 TCGGGAAGCTAAGAAATGAGTGGTTCC--CGGATTATGATCT---CCCGG 670
|| |.|||.|||| |.| ||.||| .||| ||||.
BL00812___yul 649 TC----------GCAATCAGTG--TGCGGCGAATT---GTCTGTGCCCGC 683
BSNT_04589___ 671 CGTGCAAGGTGATGACAGTC-GCAACACATGATACGGCCTCGGC------ 713
|||.| .||||||..|.||| ||.| ||||||.|||||.||.||
BL00812___yul 684 CGTAC-CGGTGATTGCCGTCGGCGA-ACATGACACGGCTTCTGCAGTTGT 731
BSNT_04589___ 714 CGTCATTGCAGCGCCAGGAATAAATGATGGCTGGGCGTATATCAGCAGCG 763
||.|||..|.|| .|| ||..||||.||..||.|||.|.|...|||
BL00812___yul 732 CGGCATCCCCGC----TGA--AACGGATGACTTTGCATATTTGATTTGCG 775
BSNT_04589___ 764 GAACATGGTCGTTAATCGGGGTTGAAAACAAAACACCGATAATAACTGAT 813
|.||.||||||.|.||||| |||.||.
BL00812___yul 776 GCACCTGGTCGCTGATCGG------------------------AACCGAA 801
BSNT_04589___ 814 CTT--------GCT--TTAGAAAAC--------------AACTATACAAA 839
||| ||| |.|.||||| ||.|.||||||
BL00812___yul 802 CTTGACGCTCCGCTGATGACAAAACAGGCGCTCGATTGGAATTTTACAAA 851
BSNT_04589___ 840 TGAACGCGGCGCAAACAACACCATT-CGCTTTCTCAAAAACATTATCGGC 888
|||..||||.||...|..|| |||| ||.|||.|.|||||||||||.||.
BL00812___yul 852 TGAGGGCGGTGCCGGCGGCA-CATTCCGTTTTTTAAAAAACATTATGGGA 900
BSNT_04589___ 889 ATGTGGGTGATACA-AGAAGTCAGAC---------AACAGTTACAAGCAG 928
.|||||.||.|.|| .|..|||||.| ||.||.|...|.|||
BL00812___yul 901 TTGTGGCTGTTCCAGCGCTGTCAGGCGGATTGGGAAAAAGATGGGATCAG 950
BSNT_04589___ 929 ATTACTCT-TTCCAGC----AGCTTG-CAGAAGAAGCCAAAAAAACAGAA 972
|| |||.||| |||||| || ||...|||..|.|..|||||
BL00812___yul 951 ------CTATTCGAGCGCCGAGCTTGTCA-AACTTGCCGGACAGTCAGAA 993
BSNT_04589___ 973 CCATTC----CAGCAATTTATAAACTTAAAT----GATAAAC----GTTT 1010
.||||| |.||..||.| |||.|.| ||||
BL00812___yul 994 GCATTCAGGTCGGCGGTTGA-----------CCCGGATGACCCGGTGTTT 1032
BSNT_04589___ 1011 CCTGAATCCAGAAAACATGATAAAGGAAATACA-ACATTATTGCAG---- 1055
||.|||||.|...|.|||....|||..|| || |.|.||.|||.|
BL00812___yul 1033 -CTCAATCCCGTCCATATGCCTGAGGCGAT-CAGAGAGTACTGCCGTGCA 1080
BSNT_04589___ 1056 ----------AC-------AAACCCGCCAAAAGACTCCTCGCACTGCAGG 1088
|| ||||.|.|..|.||| ||.|| |.||||..|
BL00812___yul 1081 GCAGGGCAGCACGTGCCGGAAACGCCCGGACAGA-TCATC-CGCTGCGTG 1128
BSNT_04589___ 1089 C--GAACTTGCCTGCTGCATCTACAGCAATTTAGCC--ATCATCTATGCG 1134
| ||| .|||| |||.|.|| ||| .|| .|||.||.||
BL00812___yul 1129 CTGGAA--AGCCT--TGCGTTTA----AAT---ACCGGTTCACCTTTG-- 1165
BSNT_04589___ 1135 ATAGCCATCAAAGAGCTCGAAACAATCACAGAAAAACCGATCGAGCA--- 1181
||..|.|.|||||..|.||||.|||| ||..|
BL00812___yul 1166 ----------AACGGATTGAAACCTTGACAGGAAAA------GAATATGA 1199
BSNT_04589___ 1182 ---ATTTCATATCATCGGC-GGCGGAGCCCGGAATGATTTCTTAAAT--- 1224
|.||||.|| ||| ||||||| ||| ||| .||||
BL00812___yul 1200 CGGACTTCACAT----GGCGGGCGGAG---GGA-----TTC-GAAATGAA 1236
BSNT_04589___ 1225 ---------CAATTAACGGCAGACATG-AGTG----GAAAAGCGGTATAT 1260
||||..||||| || ||| |.|| |||| .||||..
BL00812___yul 1237 CTGCTCTGCCAATACACGGC-GA-ATGTACTGTCCAGAAA---TGTATGG 1281
BSNT_04589___ 1261 GCAGGGCCGATAGAGGCAACTGCCACCGGAAATCTT----TTGATGC--- 1303
||.||.|||..||||||||..||||.|||.||..|| |..|.||
BL00812___yul 1282 GCTGGACCGTCAGAGGCAAGCGCCATCGGCAACATTGCCGTACAGGCCGT 1331
BSNT_04589___ 1304 --------AAATGATTGCTGCCAAAGA-AGTCAAAGACATAAAAGAAGCC 1344
|.|||.|| || .|| |.|||.|| .|||
BL00812___yul 1332 CGCGCTCGACATGTTT--TG----GGATATTCAGAG----------CGCC 1365
BSNT_04589___ 1345 CGGCAAGTCG-TCAGAAATTCCTTTCCGATCAAA----GTGTTTACACCT 1389
|||.||| || |||....||||||||| ||||| ||.|.| |||.
BL00812___yul 1366 CGGAAAG-CGATCAAGGCTTCCTTTCC--TCAAAAAACGTATGT--ACCG 1410
BSNT_04589___ 1390 AAAGACATTGACAGAAGC------ACGATCATTC------------AGTC 1421
.|||| .|||||||| .||..|||.| ||||
BL00812___yul 1411 GAAGA----TACAGAAGCGTGGGAGCGGGCATACCGCCGCTATACAAGTC 1456
BSNT_04589___ 1422 A---TTTCAGCAAACTGTTT-----TGAAAGCGCTATCTAAATGA 1458
| |.||.|| .|.|.|| |||
BL00812___yul 1457 AGATTCTCGGC--GCCGCTTCCCGCTGA----------------- 1482
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