Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03530 and BL00794
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03530___yqjV.1.5803.seq
# -bsequence dna-align/BL00794___yqjV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03530___yqjV-BL00794___yqjV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03530___yqjV-BL00794___yqjV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03530___yqjV
# 2: BL00794___yqjV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1344
# Identity: 849/1344 (63.2%)
# Similarity: 849/1344 (63.2%)
# Gaps: 216/1344 (16.1%)
# Score: 2451.0
#
#
#=======================================
BSNT_03530___ 1 ATGA---AGAAATGGAAAGATATCCACCCGATCAGCTGGACAATTATAAT 47
|||| |.||||||.|..|.|||||||||.||||||||||.|||||..|
BL00794___yqj 1 ATGAAACAAAAATGGCAGAACATCCACCCGCTCAGCTGGACCATTATTGT 50
BSNT_03530___ 48 CGGAACCATTTTCGGCAGAATGGCAACATCGATGAGCATTCCTTTTTTAG 97
|||||||||||||||..|.||||.||||.|.||||||||.||||||||||
BL00794___yqj 51 CGGAACCATTTTCGGACGCATGGGAACAGCCATGAGCATCCCTTTTTTAG 100
BSNT_03530___ 98 CGATTTATTTGACAGCCGTCCAAGGCGCATCAGCTTC---CTATGCAGG- 143
|.||||||||||||...||..|||||||.| |||| ||.|||.||
BL00794___yqj 101 CAATTTATTTGACACAAGTGAAAGGCGCCT---CTTCCGGCTTTGCGGGA 147
BSNT_03530___ 144 GCTGGTCATTGCCGCGAGCTCATCAG-TCGGCATCCTCGCAAGCTTTTAC 192
||| ||||||||.|||||||| ||.| ||||.||....|||||||||||.
BL00794___yqj 148 GCT-GTCATTGCAGCGAGCTC-TCTGATCGGAATTGCGGCAAGCTTTTAT 195
BSNT_03530___ 193 GGCGGATATATCTCAGATAAATTCGGCAGAAAAAACATGATGCTTGTATC 242
|||||.||..|.|||||.|..||||||.|.||||.|||.|||||.||.||
BL00794___yqj 196 GGCGGGTACTTATCAGACAGGTTCGGCCGGAAAACCATCATGCTCGTCTC 245
BSNT_03530___ 243 GATTTTCGGATGGATGCTGGTATTTGCAGGCTTTG----CGGCGGCATCT 288
|||||||||.||||.|.|.||.||.||.||.|||| ||.|| .|
BL00794___yqj 246 GATTTTCGGCTGGACGTTCGTGTTCGCCGGTTTTGCACTCGCCG----AT 291
BSNT_03530___ 289 CATCTCTGGGTGTTTTTTGTAGTTAACGCATTAAACGGTCTTTGCAAATC 338
|||.|||||...||.|||.|..|.||.||.||||||||..|.||| |
BL00794___yqj 292 CATGTCTGGACATTCTTTATCATGAATGCCTTAAACGGATTATGC----C 337
BSNT_03530___ 339 AC----TGTTTGAGCCCGCTTCAAAGGCCTTGCTGTCTGA--TATGACAG 382
.| |||||||.||..||||||..||..||||.||.|| |||
BL00794___yqj 338 GCGCTTTGTTTGAACCGACTTCAAGAGCGCTGCTTTCAGACGTAT----- 382
BSNT_03530___ 383 AAGAAA----AAACGAGACTGCTAGTTTTTAATTTACGCTATGCAGCTAT 428
..||| |||||.|.||..|.||.||||||.|.||||||.|.||.||
BL00794___yqj 383 -CCAAACCCGAAACGCGCCTTTTCGTCTTTAATCTCCGCTATACCGCGAT 431
BSNT_03530___ 429 TAATATCGGTGTTGTCTTCGGACCTGTGCTT---GGCCTATATTTCGGCT 475
.||..||||.||.||||||||.|| |||| |||||.|||.||||.|
BL00794___yqj 432 CAACCTCGGCGTCGTCTTCGGCCC---GCTTTTAGGCCTGTATCTCGGAT 478
BSNT_03530___ 476 CATCGCAATCGACTACGCCCTTTTTGGTGCCTGCAGTCATTTA------- 518
|.||..||.||||...|||.|||||..|..|.||..|||||||
BL00794___yqj 479 CTTCCAAAACGACGCTGCCGTTTTTCATTGCGGCTTTCATTTATTTTATT 528
BSNT_03530___ 519 ----CGGCCTATACGGAATTGTGCTTGCCCTCCAATTTAAAAAACATCCA 564
|||| .|||||.|.|.|.|||||||||.|.|| ||
BL00794___yqj 529 TATGCGGC-----------GGTGCTGGTCATTCAATTTAAACACCA--CA 565
BSNT_03530___ 565 TCCTTATCAGCACCAGCCCAGTCCCGAAATATGAGC--------GTGCGG 606
||.||.|.| ||||..|| ||.|||| ||| ||||||
BL00794___yqj 566 -CCGTACCGG---CAGCTGAG---CGTAATA--AGCGTATAAAAGTGCGG 606
BSNT_03530___ 607 GAAGCGTTTATGGTCACGCAAAA--------GGATTATCTTTTTACCATT 648
||.|||.|...|||.| ||||| || |.|||||.|||
BL00794___yqj 607 GACGCGCTGGAGGTGA--CAAAAACAGACCGGG------TATTTACGATT 648
BSNT_03530___ 649 --GCT--TTGG-TCGGCATTACGCTATGCACCTTCGGCTACTCACAATTT 693
||| |.|| ||| ||| ||.||....|||||.||.||.||.||.
BL00794___yqj 649 ACGCTAATCGGTTCG--ATT---CTTTGTTTGTTCGGATATTCCCACTTC 693
BSNT_03530___ 694 AGTTCCACATTCCCTCAGTATATGGCG--CAGAACCCCTTGATCGGCAAT 741
|..||.||..|..|.||.||.|||||| ||| |||.||.||.|...|.
BL00794___yqj 694 ACATCGACGCTTGCACAATACATGGCGGCCAG--CCCGTTCATTGAAGAC 741
BSNT_03530___ 742 GGAACGAAGCTGTACGGGCTGATGCTGACATTAAACGCAAT---CGTAGT 788
||.|||||..|||.|||..||||||||||..|.||.||..| ||| |
BL00794___yqj 742 GGGACGAAAGTGTTCGGCATGATGCTGACGCTGAATGCCTTGGCCGT--T 789
BSNT_03530___ 789 GTTGGCG-ACGCAATTTCCC-ATTGTCCATTTTGCAAAACGGTTTTCGCC 836
.|||.|| || |.|.||| ||.||.|||.|.||.|||||||||||.||
BL00794___yqj 790 CTTGCCGTAC---AGTACCCGATCGTACATATCGCCAAACGGTTTTCACC 836
BSNT_03530___ 837 GCTTTGTTCTCTGA-TGCTCGGTAATGTGATGGTTAGCATCAGCATGGCC 885
|.|||..||.|||| ||| .||.||||||.||.||||....|||.||
BL00794___yqj 837 GATTTTATCGCTGATTGC-AGGAAATGTGCTGATTAGTGGAAGCCTG--- 882
BSNT_03530___ 886 ATTTTCACCGTATCGCACGGTGTTCCA----------TCAATTGTGATGA 925
||||.| |.|.|..|.||||| ||.|||||..|||
BL00794___yqj 883 ---TTCAGC----CTCTCTTTTTTCCATGATCTATGGTCCATTGTCTTGA 925
BSNT_03530___ 926 TTGTCATCACATTTACAATCGGCGAAGTTCTTTTATTCTCTATGATGGAT 975
|..|.|||...|||||.|||||.||.||.|||.|.||.||.|||||||||
BL00794___yqj 926 TCATTATCGTGTTTACGATCGGGGAGGTGCTTCTCTTTTCGATGATGGAT 975
BSNT_03530___ 976 TTGTATGTAGACCAGATTGCAAAACCAGGAT----TAAAAGGCACTTATT 1021
||....||.||||.|||||| ||.|..| |.|||||||||||.|
BL00794___yqj 976 TTACTGGTCGACCGGATTGC----CCGGCCTGAGCTGAAAGGCACTTACT 1021
BSNT_03530___ 1022 TCGGGGCAATCGGTTTTTCACAGCTCGGAAACGTCATCGGCCCTTGGATC 1071
|.|||||.||.||.||..|.|||||.||||.|||..||||||||||| .|
BL00794___yqj 1022 TTGGGGCTATGGGCTTCACCCAGCTTGGAAGCGTGGTCGGCCCTTGG-GC 1070
BSNT_03530___ 1072 GGGGGGATATG----TATAGACCTGTTTAGCGCTGGCCGG-----CCGAT 1112
||||||| ||| |..|.||||.|..|| ||| |||.|
BL00794___yqj 1071 GGGGGGA-ATGCTGCTGGACACCTTTGGAG-------CGGAAAAACCGTT 1112
BSNT_03530___ 1113 TTATATTTTTTCTGTCCTGAGCGGCATTACCCTGCTCGGCCTGCCATTTT 1162
||..|.||||.|..||||| .||||| ||| .||||||.
BL00794___yqj 1113 TTTCACTTTTGCAATCCTG-----------TCTGCT--GCC-ACCATTTG 1148
BSNT_03530___ 1163 TAGCGTTC--------------GCCTATCGGCAAATGAAAATGGA-GACC 1197
..|||||| |||||.|||.||.|.|||||||| ||
BL00794___yqj 1149 CGGCGTTCCTTTCCTGGTAGCAGCCTACCGGAAACTCAAAATGGATGA-- 1196
BSNT_03530___ 1198 A-CAAAACACCGTTCCCGTCTGGAAAA-------GCCGCTTTAA 1233
| |||||..|..||...|| |.||||| ||.||.||||
BL00794___yqj 1197 AGCAAAAGTCAATTTAAGT-TCGAAAAAAACGATGCAGCATTAA 1239
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