Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03489 and BL00778
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03489___sigF.1.5803.seq
# -bsequence dna-align/BL00778___sigF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03489___sigF-BL00778___sigF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03489___sigF-BL00778___sigF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03489___sigF
# 2: BL00778___sigF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity: 593/780 (76.0%)
# Similarity: 593/780 (76.0%)
# Gaps: 24/780 ( 3.1%)
# Score: 2216.0
#
#
#=======================================
BSNT_03489___ 1 ATGGATGTGGAGGTT----AAGAAAAACGGCAAAAACGCTCAGCTGAAGG 46
||||||||||||||| ||||||| |.|.|||.|||||||.||.|
BL00778___sig 1 ATGGATGTGGAGGTTAAAAAAGAAAA----CCAGAACACTCAGCTTAAAG 46
BSNT_03489___ 47 ATCATGAAGTAAAGGAATTAATCAAACAAAGCCAAAATGGCGACCAGCAG 96
|.||||||||.||.|||.|.||.|||.|.|||||.||.|||||.||..|.
BL00778___sig 47 ACCATGAAGTGAAAGAACTGATTAAAAACAGCCAGAACGGCGATCAAAAA 96
BSNT_03489___ 97 GCAAGAGACCTCCTCATAGAAAAAAACATGCGTCTTGTTTGGTCTGTCGT 146
|||||.||||||||||||||||||||||||||||||||||||||||||||
BL00778___sig 97 GCAAGGGACCTCCTCATAGAAAAAAACATGCGTCTTGTTTGGTCTGTCGT 146
BSNT_03489___ 147 ACAGCGGTTTTTAAACAGAGGATATGAGCCTGACGATCTCTTCCAGATCG 196
.|||||.|||||.||||||||.||||||||||||||.|||||.||.||||
BL00778___sig 147 TCAGCGTTTTTTGAACAGAGGCTATGAGCCTGACGACCTCTTTCAAATCG 196
BSNT_03489___ 197 GCTGCATCGGGCTGTTAAAATCTGTTGACAAATTTGATTTAACCTATGAT 246
||||||||||.||.||.||.||.||.||||||||.|||.|..|||||||.
BL00778___sig 197 GCTGCATCGGCCTCTTGAAGTCGGTGGACAAATTCGATCTTTCCTATGAC 246
BSNT_03489___ 247 GTGCGTTTTTCAACGTATGCAGTGCCGATGATTATCGGAGAAATCCAACG 296
||.||.|||||.||.||.||.||.||||||||||||||.||.||.||.||
BL00778___sig 247 GTTCGGTTTTCCACCTACGCCGTTCCGATGATTATCGGCGAGATTCAGCG 296
BSNT_03489___ 297 ATTTATCCGTGATGACGGAACCGT-AAAGGTATCACGGTCATTAAAAGAG 345
.||||||.|.|||||||||||||| ||||..|.| ||.||..|.|||||.
BL00778___sig 297 GTTTATCAGAGATGACGGAACCGTCAAAGTGAGC-CGCTCGCTGAAAGAA 345
BSNT_03489___ 346 CTTGGAAACAAAATCCGGCGCGCGAAGGATGAGCTTTCGA----AAACAC 391
||.||.||||||||||||||.|||||.||.||||||||.| ||||
BL00778___sig 346 CTCGGCAACAAAATCCGGCGGGCGAAAGACGAGCTTTCCAAGTCAAAC-- 393
BSNT_03489___ 392 TGGGCAGAGTGCCGACGGTGCAGGAGATCGCTGACCATTTGGAGATTGAA 441
|||.|..|.|||||.||.|||||.|||||.||..||.|.||.|| .|
BL00778___sig 394 --GGCCGGATTCCGACCGTTCAGGAAATCGCCGATTATCTCGAAAT--CA 439
BSNT_03489___ 442 G--CTGAGGATGTTGTACTGGCCCAAGAGGCGGTAAGGGCTCCATCTTCG 489
| |.||.||.||.||..|||||||.||.|||||..|..||||.||.||.
BL00778___sig 440 GTTCAGAAGAGGTCGTGATGGCCCAGGAAGCGGTCCGCTCTCCCTCGTCC 489
BSNT_03489___ 490 ATTCACGAAACCGTTTATGAAAATGACGGAGATCCGATTACCCTGCTTGA 539
|||||.|||||.|||||.|||||.|||||.||.||||||||.||.||.||
BL00778___sig 490 ATTCATGAAACGGTTTACGAAAACGACGGGGACCCGATTACACTTCTGGA 539
BSNT_03489___ 540 TCAAATCGCTGACAACTCAGAAGAAAAATGGTTTGACAAAATTGCGCTGA 589
.||||||||.||..|.||.|||||.||.|||||.||.|||||.||..|||
BL00778___sig 540 CCAAATCGCCGATCAGTCGGAAGAGAAGTGGTTCGATAAAATCGCTTTGA 589
BSNT_03489___ 590 AAGAAGCAATCAGCGATTTGGAGGAAAGGGAAAAACTAATCGTCTATCTC 639
|.|||||.||||..||||||||.|||.|||||||.||.||.||.|||.|.
BL00778___sig 590 AGGAAGCCATCAAGGATTTGGATGAACGGGAAAAGCTGATTGTTTATTTA 639
BSNT_03489___ 640 AGATATTATAAAGACCAGACACAGTCCGAGGTGGCTGAGCGGCTCGGGAT 689
||.|||||.||||||.||||.||.||.||.||.||.||.||.|||||.||
BL00778___sig 640 AGGTATTACAAAGACAAGACGCAATCTGAAGTTGCCGACCGCCTCGGCAT 689
BSNT_03489___ 690 CTCTCAGGTGCAGGTTTCCAGGCTTGAAAAGAAAATATTAAAACAGATCA 739
.||.||||||||.||.||.||||||||.||.||.||.|||||.||.||||
BL00778___sig 690 ATCCCAGGTGCAAGTCTCGAGGCTTGAGAAAAAGATTTTAAAGCAAATCA 739
BSNT_03489___ 740 AGGTTCAAATGGATCATACGGATGGCTAG- 768
|....||.|||||.|||...||..||| |
BL00778___sig 740 AAAACCAGATGGACCATTTTGAAAGCT-GA 768
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