Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04943 and BL00741

See Amino acid alignment / Visit BSNT_04943 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04943___yvrD.1.5803.seq
#    -bsequence dna-align/BL00741___yvrD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04943___yvrD-BL00741___yvrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04943___yvrD-BL00741___yvrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: BL00741___yvrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     560/828 (67.6%)
# Similarity:   560/828 (67.6%)
# Gaps:          72/828 ( 8.7%)
# Score: 1790.0
# 
#
#=======================================

BSNT_04943___      1 ATGGATTTACAGCTAAAAGACAAACTCGTCTTAATCACCGGCTCGACGTC     50
                     |||||||||.||||.|||.||||||||||..|..|.||.||.||.||..|
BL00741___yvr      1 ATGGATTTAAAGCTGAAAAACAAACTCGTGCTCGTAACGGGTTCTACTGC     50

BSNT_04943___     51 CGGTATCGGGAAAGCCGCCGCAAAAAGCTTTCTGCAAGAGGGTGCGGCAG    100
                     .|||||.||.|||||..|.||..||..||||.||...||.||.||.|..|
BL00741___yvr     51 TGGTATTGGAAAAGCAACGGCGGAAGCCTTTTTGGCGGAAGGCGCCGAGG    100

BSNT_04943___    101 TCATTGTCAACGGACGCAAACAGGAGACTGTTAA--------TCGCACGA    142
                     ||||.||.||||||||  .||||.|||     ||        |||..|| 
BL00741___yvr    101 TCATCGTAAACGGACG--GACAGAAGA-----AAAGGTCCAGTCGGTCG-    142

BSNT_04943___    143 TTGAAGAGCTTTCTGGATATGGAACGGTGCACGGTGCTGCTGCCGATTTG    192
                     ||||.||||||||..|..|.||||..||.|||||...|||..|.|||||.
BL00741___yvr    143 TTGATGAGCTTTCCCGGCACGGAAATGTTCACGGAATTGCCACTGATTTA    192

BSNT_04943___    193 TCAAAAACAGATG-AAGCAGCGGCTTTTATTGAAAAAGTAAA----TGAA    237
                     ||..|..|.||.| |||||| |||..|..|.||||    |||    ||||
BL00741___yvr    193 TCCGATCCTGAAGAAAGCAG-GGCACTGGTCGAAA----AAACCGCTGAA    237

BSNT_04943___    238 ATCGGTGATATTGATATCCTTGTCAACAACCTTGGTTTCTTCGAGGTAAA    287
                     |||||.||..|||||.||||.|||||.||..|.||.|||||.||.||.||
BL00741___yvr    238 ATCGGGGAGCTTGATGTCCTCGTCAATAATATGGGCTTCTTTGAAGTGAA    287

BSNT_04943___    288 AGACTTTGCCGATGTGACAGATGAAGAGTGGAATC-AATATTTCGAAGTG    336
                     .||.|||.|.||.||||||||.||||||||| .|| |||||||.|||||.
BL00741___yvr    288 GGATTTTACAGACGTGACAGACGAAGAGTGG-CTCAAATATTTTGAAGTA    336

BSNT_04943___    337 AACGTGATGAGCGCCGTTCGGACAAGCCGTCAC-TTCCTTCCAAAAATGC    385
                     ||.||..|.|||||||||.||....|||| |.| ||  ||       |||
BL00741___yvr    337 AATGTTTTAAGCGCCGTTAGGCTTTGCCG-CGCGTT--TT-------TGC    376

BSNT_04943___    386 TTGCCA-----AA----AACAGCGGCCGCATTTTAAATATTGCAAGTGAA    426
                     ..||||     ||    ||.|..||..|..||.|.|||.|.|||||.||.
BL00741___yvr    377 CGGCCATGCTGAAGCGGAATAAGGGAAGGGTTCTCAATTTGGCAAGCGAG    426

BSNT_04943___    427 GCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAAC    476
                     ||.|||.|.||||||||.||...||||||.||.||.||.|||||||||||
BL00741___yvr    427 GCCGGCATTAAACCGCTTCCGCAGATGATCCCTTATTCCATGACAAAAAC    476

BSNT_04943___    477 GGCGCTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAA    526
                     .||..|||||||..|.||||||||..||||.||||||||||||||.||||
BL00741___yvr    477 CGCTTTGATCAGTTTGTCAAGAGGTTTGGCCGAAATGACAAAAGGGACAA    526

BSNT_04943___    527 ATGTGACGGTTAACTCAGTGCTCCCGGGACCTACTTGGACAGAGGGCGTG    576
                     |||||||.||.|||||.||.||.|||||||||||.|||||.||.|||||.
BL00741___yvr    527 ATGTGACCGTCAACTCTGTTCTTCCGGGACCTACCTGGACGGAAGGCGTC    576

BSNT_04943___    577 GC--ATCCTATATGGAAGGCGCCGC----------AAAAGCAGCCGGCCA    614
                     ||  ||  |||||||||||.|||||          ||||.|         
BL00741___yvr    577 GCCAAT--TATATGGAAGGTGCCGCCGCTCAGGAGAAAACC---------    615

BSNT_04943___    615 GGATACAGATACATTTATCAAAGACTATTTCAAGGTCAATGAGCCAACCT    664
                      |||..|||.||.|||.|||||||.||||||||.||.||||||||.||.|
BL00741___yvr    616 -GATTTAGACACCTTTGTCAAAGATTATTTCAAAGTGAATGAGCCGACTT    664

BSNT_04943___    665 CACTTATTCAGCGATACGCGACAGCAGAAGAAGTCGCCAACACAATCGTA    714
                     |..|.||||||||.||.||.|.|.|.||||||||.||.|..||.|||||.
BL00741___yvr    665 CTTTGATTCAGCGCTATGCAAAACCGGAAGAAGTGGCGAGTACGATCGTC    714

BSNT_04943___    715 TTCCTCGCGTCTGACGCCGCATCCGCCATTAACGGCACGGCACAGCGTGT    764
                     |.||||||.||.||....||..|.||.||.|||||..|.||.||..|.||
BL00741___yvr    715 TACCTCGCTTCCGAAAAAGCTGCGGCTATCAACGGTTCAGCTCAAAGAGT    764

BSNT_04943___    765 GGAAGGCGGCATTATCCGTTCTCTGTAG    792
                     |||.|||||.||.|||||.||..|.||.
BL00741___yvr    765 GGAGGGCGGAATCATCCGCTCGATTTAA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04943 and BL00741

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
