Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04911 and BL00734
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04911___yvtA.1.5803.seq
# -bsequence dna-align/BL00734___htrB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04911___yvtA-BL00734___htrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04911___yvtA-BL00734___htrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04911___yvtA
# 2: BL00734___htrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1489
# Identity: 967/1489 (64.9%)
# Similarity: 967/1489 (64.9%)
# Gaps: 230/1489 (15.4%)
# Score: 3039.0
#
#
#=======================================
BSNT_04911___ 1 ATGGATTATCGACGTGATGGCCAAAACGATC---AACAT-CAAACTGA-- 44
|||||||.|.||||.|||| ||||.| ||||| |||| |||
BL00734___htr 1 ATGGATTTTAGACGCGATG------ACGAACAAAAACATGCAAA-TGAAG 43
BSNT_04911___ 45 ---ACCTTCAC-ATACAGAACAGCAGAATACAGAAAAC--CAGAAGCTGA 88
|..||||| | ||||..|||| |..|.|.|||| |||...||||
BL00734___htr 44 AGCAGTTTCACGA---AGAAGCGCAG-ACGCCGCAAACGGCAGGTTCTGA 89
BSNT_04911___ 89 TTGGA----CATTCTGAACAAGAATTGCTTG---ACGTGCCTGTGTCTTA 131
||| ||.||.||||| ||..| |.|.|||.|.| ||.|
BL00734___htr 90 --GGAGCAGCAGTCAGAACA------GCCGGCAAAGGAGCCCGAG-CTGA 130
BSNT_04911___ 132 T------GAAGCGG-----GAC-----GGCAG--------------GAAA 151
| ||| || ||| |.||| ||||
BL00734___htr 131 TTTTAAAGAA--GGATACAGACGATCAGTCAGATCTTACGAATAAAGAAA 178
BSNT_04911___ 152 CGGCTTCTGCACTAGAA------ATGGAAAAGCAAGAAACGGCTGTGAAA 195
|.|||.|.||.||.||| |.|||||.|..|| |||| |
BL00734___htr 179 CCGCTGCAGCCCTGGAAGATGCCAGGGAAACGAGAG---CGGC------A 219
BSNT_04911___ 196 AAAGAAAAGAAACGGAGAGCCGCA--------TGGCTGAGCCCGATTTTA 237
||||||||| ||| |||| |||||||||||||||||.
BL00734___htr 220 AAAGAAAAG---CGG-----CGCAAGGCTTCGTGGCTGAGCCCGATTTTG 261
BSNT_04911___ 238 GGCGGTATTATCGGCGGGGGCCTCATGCTTGGCATCGCGCCTTATCTGCC 287
|||||.||.|||||.||.|||.|..|||||||.|||.|.||.||||||||
BL00734___htr 262 GGCGGGATCATCGGAGGCGGCTTGGTGCTTGGAATCTCCCCGTATCTGCC 311
BSNT_04911___ 288 GTCAGACCAAAATCAGGCGA----CCGAGACCG---CTTCCGCAA----A 326
| ||||| ||||| || ||.|||.|| |
BL00734___htr 312 G--------------GGCGATCATCCGAG--CGAAACTGCCGGAACCGGA 345
BSNT_04911___ 327 TAAACAG-----GTGCAGTCTGATAATTTTACAACGGCGCCGATAACGAA 371
.|.|||| ..||||||..|.|||||.||.||....||..|.|||||
BL00734___htr 346 CAGACAGAGCCAAAGCAGTCGCAGAATTTCACCACAAAACCTGTCACGAA 395
BSNT_04911___ 372 CGCATCAAACATCGCTGATATGGTAGAGGATTTAGAGCCTACGATTGTCG 421
||||...|||.|..||||||||||.||.|||||.||||||.||||.||||
BL00734___htr 396 CGCAGATAACGTACCTGATATGGTGGAAGATTTGGAGCCTGCGATCGTCG 445
BSNT_04911___ 422 GAATCTCAAATATCCAAA----------CCTCTCAAAATAACACATTCGG 461
||.|.||||||||.|||| |.||||..||.|..||.|
BL00734___htr 446 GAGTTTCAAATATTCAAACGAGCTTCGGCTTCTCTGAAGACGACGT---- 491
BSNT_04911___ 462 CACAGGAGGAGGCTCCAGCTCAGAAAGTGAAAGCGGAACCGGGTCAGGTG 511
||||||| |||||.||.||.|||||.|
BL00734___htr 492 ----GGAGGAG--------------------AGCGGCACGGGATCAGGCG 517
BSNT_04911___ 512 TTATTTTCAAAAAAGACAGCAATAAAGCGTATATCATTACAAACAACCAT 561
|.||.||.||.||||||.||...||.||.||.||.||.||||||||||||
BL00734___htr 518 TCATCTTTAAGAAAGACGGCGGCAAGGCCTACATTATCACAAACAACCAT 567
BSNT_04911___ 562 GTCGTTGAAGGCGCGAACAAGCTGACTGTTACGCTATACAACGGAGAAA- 610
||||||||||||||....|||.||||..|..|..|||||||||||.|.|
BL00734___htr 568 GTCGTTGAAGGCGCCTCGAAGGTGACCATCTCCTTATACAACGGAAAGAC 617
BSNT_04911___ 611 --CGGAAACTGCCAAGCTTGTCGGCAGCGATACCATTACTGATTTGGCAG 658
|||| |||||||.||.||||||||||..|..|.||||||.||||.|
BL00734___htr 618 CGCGGA---TGCCAAGATTATCGGCAGCGACGCTTTGACTGATCTGGCTG 664
BSNT_04911___ 659 TTTTGGAAATCAGCAGCAAGAACGTCAAAAAAGTGGCGAGCTTTGGTGAT 708
||||.||.|||||||||||...|||..|.||.||.||.||.||.||.||.
BL00734___htr 665 TTTTAGAGATCAGCAGCAAAGGCGTTGATAAGGTTGCAAGTTTCGGAGAC 714
BSNT_04911___ 709 TCTTCACAGCTGCGCACTGGCGAAAAGGTAATCGCTATCGGTAACCCGCT 758
||..||.|.||||||.|.||||||||.|||||.||.|||||.|||||.||
BL00734___htr 715 TCCGCAAAACTGCGCGCCGGCGAAAAAGTAATTGCGATCGGGAACCCTCT 764
BSNT_04911___ 759 CGGACAGCAGTTTTCCGGTACGGTGACACAAGGCATCATTAGCGGACTGA 808
|||.|..||.|||||..|.|||||.|||.||||||||||.|||||..|.|
BL00734___htr 765 CGGCCTTCAATTTTCAAGAACGGTTACAGAAGGCATCATCAGCGGTGTCA 814
BSNT_04911___ 809 ACCGGACAATTGATGTGGATACAACACAAGGGACGGTGGAAATGAACGTG 858
|||||||.|||||.||....|||.|..||||||....|||.||||||||.
BL00734___htr 815 ACCGGACGATTGAAGTCTCAACATCTGAAGGGAATTGGGATATGAACGTC 864
BSNT_04911___ 859 CTGCAAACTGATGCAGCGATCAATCCGGGGAACAGCGGAGGCCC----AT 904
||.||.||.|||||.||||||||.||.||.||||||||.||.|| ||
BL00734___htr 865 CTTCAGACAGATGCGGCGATCAACCCTGGAAACAGCGGCGGGCCTCTGAT 914
BSNT_04911___ 905 TAATCAATGCAAGCGGCCAGGTCATCGGCATCAACAGCTTGAAGGTGAGC 954
||| || || |||||.|||||||||||||||||||||.|||||.|.|||
BL00734___htr 915 TAA-CA--GC-AGCGGGCAGGTCATCGGCATCAACAGCCTGAAGATCAGC 960
BSNT_04911___ 955 GAAAACGGCGTGGAATCACTTGGATTTGCGATCCCAAGCAATGATGTCGA 1004
.|||.|||.||.|||||.|||||.||.|||||.||.|||||.|||||..|
BL00734___htr 961 CAAAGCGGTGTTGAATCGCTTGGCTTCGCGATTCCGAGCAACGATGTTCA 1010
BSNT_04911___ 1005 GCCGATTGTTGACCAGCTGCTGCAAAACGGGAAGGTGGACCGTCCGTTTT 1054
||||||.||||||.||||..||.||||.|||||.|||||.||.||.||..
BL00734___htr 1011 GCCGATCGTTGACGAGCTTTTGGAAAAAGGGAAAGTGGAACGGCCTTTCC 1060
BSNT_04911___ 1055 TAGGCGTGCAGATGATTGACATGTCA-CAAGTTCCTGAAACCTATCAGGA 1103
|.||||||||.|||||.||.||| || ||.||.||||||...||.|||.|
BL00734___htr 1061 TCGGCGTGCAAATGATCGATATG-CAGCAGGTGCCTGAACAGTACCAGCA 1109
BSNT_04911___ 1104 AAATACGCTCGGCCTGTTTGGAGATCAATTGGGC-----AAAGGTGTTTA 1148
|||||||||||||||.||.|||||.|| || |||||.||.||
BL00734___htr 1110 AAATACGCTCGGCCTATTCGGAGACCA-----GCTTAATAAAGGCGTGTA 1154
BSNT_04911___ 1149 TGTAAAAGAAGT-TCAAGC--AAATTCGCCGGCAGAAAAAGCAGGTATTA 1195
..|..|..|||| || || ||| |||||.||.|.|.|.||.|||||.|
BL00734___htr 1155 CATCGATAAAGTATC--GCCGAAA-TCGCCTGCGGCAGACGCGGGTATGA 1201
BSNT_04911___ 1196 AATCTGAGGATGTCATTGTCAAACTAAACGGTAAAGACGTGGAAAGCAGT 1245
||.|.|..||.|||||...||||.|.|||||.|||.||||.||||.||..
BL00734___htr 1202 AAGCCGGCGACGTCATCACCAAAATGAACGGCAAAAACGTCGAAACCACC 1251
BSNT_04911___ 1246 GCGGATATCCGTCAG----ATCCTTTACAAAGACTTAAAAGTCGGAGATA 1291
.|.|| |.|||| ||.|||||.|.|||...|||||..|||||||
BL00734___htr 1252 TCAGA----CCTCAGAAAAATTCTTTATACAGAAGCAAAAGCAGGAGATA 1297
BSNT_04911___ 1292 AAACAACAATCCAAGTGCTGCGAAAGGGAA---AAACGAAAACGTTGAAC 1338
.....|||.|..|.||||||.||||.|||| |||| |||..||||.
BL00734___htr 1298 CTGTCACATTTGAGGTGCTGAGAAACGGAAAGCAAAC---AACAATGAAA 1344
BSNT_04911___ 1339 GCGACACTGACCAAGCAGACAGAAAGCAGTTCAAGCTAA 1377
||.|.|||..|.| ||||||..||| |||
BL00734___htr 1345 GCAAAACTTGCGA---------AAAGCAAATCA---TAA 1371
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